Array 1 2600506-2604424 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062938.1 Bifidobacterium eulemuris strain DSM 100216 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 2600506 33 100.0 34 ................................. CTGGATCGATTGTGCTCGACAAGGGCCTTTCGGG 2600573 33 100.0 34 ................................. AGGAAGGCGACTTGTGCATGTTCACGGCCAACGG 2600640 33 100.0 34 ................................. CAGCAATGCACGTACATGGGTTGATTGGCGTACA 2600707 33 100.0 34 ................................. TTCGCGGCCTGATTGGCGAAGCGTGTGGGCTTGA 2600774 33 100.0 35 ................................. GAGTGGGTGCCCAACACCGAAGGAACCGTGAAGCT 2600842 33 100.0 35 ................................. GTCTTCGAAGCGGTGTGGCGGGCGGCGTTAGGAGA 2600910 33 100.0 34 ................................. TCCAACATCTGGAACACGATGGTCAACGCCGTCG 2600977 33 100.0 33 ................................. TTCCTCCGACCTTGGGTCTAAACTTGGTCACGG 2601043 33 100.0 35 ................................. ACTTTGGCGAGTTCGTCGATGCTGGATACCTGCTG 2601111 33 100.0 34 ................................. GCGTCGAGCATCTCCTGGAGTCCCATGACGGCGA 2601178 33 100.0 35 ................................. GTCGAGGGTGAATTCGTGCGAGACGCTGGCGAGGT 2601246 33 100.0 33 ................................. TTGCCGATGGGCAAGGGGTTGTGGCCGATGCGG 2601312 33 100.0 32 ................................. ATGCACGTCGAGTTTGAGGTCGGAGCGCAGGA 2601377 33 100.0 34 ................................. TCCTTGGTCCGCGCGGGGTATTCGCCGACCTTGA 2601444 33 100.0 34 ................................. CTTGCCGGCCTCGCCGTACGTGTTGTCGGGGTCG 2601511 33 100.0 33 ................................. AAATCCATGCCCCGCTACTAGGTTCGAGGTCGC 2601577 33 100.0 34 ................................. GCTGTAGGTGAGGAAGTTGGTGTTTATCCACGTC 2601644 33 100.0 34 ................................. ATGCCCACGATGGCCACACGACTGAAGGCCACCG 2601711 33 100.0 34 ................................. CTCGACTTCGACCCCATGCCGTTCAGCGCGGACG 2601778 33 100.0 34 ................................. TCCGTGGTCAGTTTCCCCTGGCCTGCGGTCTGGG 2601845 33 100.0 35 ................................. CAATAACGTTGGCCAATTCGGCCTCCTTTCCGCCC 2601913 33 100.0 33 ................................. ACGGTGTCGCTGCCGCCCTTGCTGTACGGCATG 2601979 33 100.0 33 ................................. GTGTAGGTCAGGTTGCTGCCCTCGACGGCCGCT 2602045 33 100.0 34 ................................. TAAAAAATATAAGAAGAGAACATCATGGAAGAGA 2602112 33 100.0 33 ................................. TATCGCGCGACCCAACGAATTTGGCAGAAACCG 2602178 33 100.0 32 ................................. GCTTTTGTTCTGCGCGGAGGTCAGACGCTCCT 2602243 33 100.0 34 ................................. TCCCAGGGCATCTCCTTGGGCCGGTACACGTAGG 2602310 33 100.0 33 ................................. ACGGACGGCCTGCTGCCAGTCAAGTTCGGCGCG 2602376 33 100.0 35 ................................. CTCCCTAATACAACGCCCGCGACTGCGGTGCCGGT 2602444 33 100.0 33 ................................. CGACCGACGGGGCGGCAGTCGCCGCCGTGTCCG 2602510 33 100.0 34 ................................. CTCCCTAATACAACGCCCGCGACTGCGGTGCCGG 2602577 33 100.0 34 ................................. AAAGCCGCATGGGACCTCATACGCGACGCCATCA 2602644 33 100.0 33 ................................. TGGCAGGCGTGGTGGTATGCGCCAGCGAGGTAG 2602710 33 100.0 37 ................................. CTTTCTGGCATGCCGGCGAGCGCCGGCGCTGTTTGAA 2602780 33 100.0 34 ................................. AGGACATGCTGCGCGACGGCAGCCTCACCCACCT 2602847 33 100.0 34 ................................. GCTGATGTCGCGGTCGAGGCAGCAGGCGGCGCGG 2602914 33 100.0 33 ................................. AACTCGGTACAGGGCGACGCGGCGAGCCTCGAA 2602980 33 100.0 35 ................................. CACGGAAGCAGCATGCCCCTGTAGTCTCGCCGCCG 2603048 33 100.0 34 ................................. ATCTGCTGCAGCTGAGTGTTAGCCGCCTGCTTCG 2603115 33 100.0 34 ................................. AGGCAGAACCTCGCCAAGGCCACCAGCGCGAACA 2603182 33 100.0 34 ................................. CTGCCGGGTCTGTGGAGATGATGATCTGGCCGGC 2603249 33 100.0 33 ................................. AACGCCAAGGACCGAGGAATATCCATCGACCTC 2603315 33 100.0 35 ................................. ACGGCCCACGCGCCGTACTGCGACCCATCCCTGAG 2603383 33 100.0 34 ................................. CTGTAAGGCCACCATATCGTCAACGCGGTAAGCA 2603450 33 100.0 34 ................................. AGCATCGCTTCGGCGGTCTTTCGCCATCGTTTTT 2603517 33 100.0 36 ................................. CTCGGAAGTGAACTGTTCGCCGTATTCCGACACCAG 2603586 33 100.0 33 ................................. ACATTGCCGGTGGCGACGCATTCGAACACCATG 2603652 33 100.0 35 ................................. ACCGATTGGAATCTGGTCTCCACACGGATCGTGGC 2603720 33 100.0 36 ................................. AGTGTTTTGCACGACACGTTCGAGGATATGTGTTCG 2603789 33 100.0 35 ................................. TGCAAGGGCATGTTCGGTTCGTCGGCCCACCGCCA 2603857 33 100.0 35 ................................. CTACCTGCGCGCGGATCTCAGCGCCGGCGACCGGT 2603925 33 100.0 34 ................................. TTCACCGTCCTCTCGGCCGAGCCGAACACCAACG 2603992 33 100.0 33 ................................. AACGCCATCGTGCCGATCGTCGGCACCGTCATC 2604058 33 100.0 34 ................................. GAGCGCGCCCGCGACGACGTGGAGGCGGTCAGGG 2604125 33 100.0 34 ................................. GCCGAGGGGTCCGGCAAGTCCTACCCGGCGGGCA 2604192 33 100.0 34 ................................. ACGAAGTACTGCTGGCCCTTGCCTGTCACGAGCG 2604259 33 100.0 35 ................................. ACATCGGCGCCGTTCGCTATCGCGATCGAGGCGTA 2604327 33 100.0 32 ................................. CCATACCAGGAGAAGAAGGAGCCGACATGGAG 2604392 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 59 33 100.0 34 GTCACCTGCCTCACGGCAGGTGTGGATCGAAAC # Left flank : AAGACTTCGTGCGGTGGCAAAAATCAGCGCAAAATACGGGCAGCGTGTGCAGAACAGCGTGTTTGAATGTGAAGTTTCGCCGTCGGATTATTTGATGTTGGTACATGATCTTGTGGAGGTGATGGATCAAGAACGAGACAGTCTTCGCATGTATAAACTTGGTGCCAAGCACTCGTCCAAGATTGAACAGTTCGGCAGGCGGCGACATCTTCCCGTTGATGATGTGATGTTGATTTAATGGGTTTCTCATATATGTGGTGCGAAATGGAAGCGCTCAGAAAATCCCTGGTTCCTTCGCACCGCTAAATTTGTGTTCAGGCTGTAGCGAATCTTTTTAGCAGATTCCGTTTGATGCTTGATAACTGAATAGTGGGCATTGATGTGAGACAAGAGATCGATGATGCATGTTTGCTGATCACTCTCTACAATAAACTCGCATAATATCAACGTGCGGATGAGCTCTTCGTCCCATATATCGAGATGGAGAGCCCATCTGTGCA # Right flank : CCAGAATGTGTTTTGTCAAGTTCGTGTCGGCTGGATATTCATGTTGTTTTCCGCAGGTTGTGCAGCGGGTTTTCCGCGGGATGATCGTTCCGTGGGTCCGCCCGCCGCCTTGGTCTGGTTTGTTGGTTATTTGGTCATGAGGGCGTTGCGGCTGCGGTAGCTTTCGCCCTTGAACCGGATGAGCCGTCCGTGGTGGACGGTGCGGTCGACGACCGCGGCGGCCATGTTCGGGTCCCCGAACACCCTGGCCCATCCGCTGAATTCGATGTTGGTGGTGTAGACGACGCTCCTTGTCTCGTAGGAATCGGATATGACCTGGAAGAGGAGGCGGCTGCCCTCCTCGTCGATGGGGATGTAGCCGAGCTCGTCGATGATCAGGAGGCGGGCCTTGGCGATGGCGGCGAGCTCCTTGTCGAGCCGGTTGTCCTGTTTCGCGCGTCTCAGGCGCATGACCAGGCTTGAGGCGGTGAAGAACCTTACCGGTATCCCGGCCCGGCACG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCTGCCTCACGGCAGGTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.10,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 2607027-2612690 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062938.1 Bifidobacterium eulemuris strain DSM 100216 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2607027 33 100.0 34 ................................. AAGGACAACGCCGCGCAGGTGCACGCCTGGGCCG 2607094 33 100.0 34 ................................. TGCGTCCACAGCACGGCCAATCCGGGCGCGACGG 2607161 33 100.0 33 ................................. AAACTCGGCAGCAAATCCGCCCCGTGGGGCACG 2607227 33 100.0 34 ................................. GAATTCGCCATGACCGGCAGCCGCGTCAAACGCA 2607294 33 100.0 33 ................................. AAAACCGCGTTGGGCAAGGCCTCCGAAGTCCTC 2607360 33 100.0 35 ................................. ACGAACACCGACTGGGGTTCGGTCGGCAAGGGCAT 2607428 33 100.0 34 ................................. TCTTTCACCAATTAACCAGATTAAGGAGCAGTTA 2607495 33 100.0 33 ................................. CAGTAGCTCGACCCGCCACGGATGATGCCGGCC 2607561 33 100.0 34 ................................. AATCAGGACGGCGCACGCCTGACCCGCTTGGACG 2607628 33 100.0 33 ................................. AGCATCATCACGCAGGGCAACCTGTGCCAGATC 2607694 33 100.0 34 ................................. ACGGCCACGGACTCCTTCGCCGAGGGGGCCGGCA 2607761 33 100.0 34 ................................. TCGGCCACGATCTGCTCGGTGAGCACGGGCATCA 2607828 33 100.0 35 ................................. TCGCGGCCATCATGCAAGTGCCCGCGAACAGCGAC 2607896 33 100.0 34 ................................. TCCAACACGGAGAGGGCCGTGGACGAACTGTCTC 2607963 33 100.0 35 ................................. CAATCGGCGGCGCTGAAGGGGTCGGCGTCCATGCG 2608031 33 100.0 35 ................................. CTGACTGCATGTCAACTCGAATGCGCGCGTCAATG 2608099 33 100.0 35 ................................. AATTTCGCACACGTGCAATGTCGCCATATCGGCGG 2608167 33 100.0 34 ................................. GCGGTGGGCTTTGATCTCGTCCCACGTCAGTCCG 2608234 33 100.0 34 ................................. ACCCTCTCGAGGCAGTATTGCAGGGCAACGGAAT 2608301 33 100.0 33 ................................. CAGATGGACACCTGCCCATCCGGCAGGACGAAG 2608367 33 100.0 34 ................................. GAGGTCGGCGACACCGTCATGCGCGGCGCGATGG 2608434 33 100.0 34 ................................. GCCAAGCCGGAGGACAGAAGGAAGATCCTCGAAT 2608501 33 100.0 35 ................................. CAGCAGTGCGCGTACATGGGCTGGTTGGCGTACAG 2608569 33 100.0 33 ................................. GTATCGTTTCCGACGCATCATCGTGCTCGTGGC 2608635 33 100.0 32 ................................. GAGGACATCTGCTCAAGGGTCCTGCGGCCCGG 2608700 33 100.0 34 ................................. ACCGCCAGCCTGCCGCGCGCGGCCATCGCCCAGC 2608767 33 100.0 34 ................................. ATGTAGGCGTAGCCGCCGGTCTCGTTCATGATCT 2608834 33 100.0 33 ................................. AAACCGTATCGAGCGCCACACCATTGGACGAGG 2608900 33 100.0 35 ................................. CGACAGCGTCGGCTACCGGCGCAGAGAAGACATCG 2608968 33 100.0 35 ................................. AGTTCGGGTACCATGCGACATAGTTCGTCGAAGGA 2609036 33 100.0 35 ................................. TATGCTGAATCCAAAGAAAAGCTCCATCGCGGAAG 2609104 33 100.0 34 ................................. CACAAAATGCCGCCCACCGAATCATGCGTCTGGG 2609171 33 100.0 35 ................................. CAAGAGGGCCATTGCGGTGCCCCAGTCGCGTTCGT 2609239 33 100.0 33 ................................. AACGACGCGCACGACGATATCTAGGAGGCTTGC 2609305 33 100.0 33 ................................. TCGCCATGCGCGACGGTGGGCGCGGTGATCCAA 2609371 33 100.0 33 ................................. CCCGACCTGCTCGTGCGCATGGCCAACGGGCGC 2609437 33 100.0 33 ................................. AGCCAGCAGCGACTTGAGCACGCCGGTCACAGG 2609503 33 100.0 35 ................................. CTCGCCGGATTGTTGTTCGCGGTCGTGTTCGGCGA 2609571 33 100.0 35 ................................. ATCGGCTACGCGAACGGCCTGTACTGCCGCGAATA 2609639 33 100.0 35 ................................. TGCTCTCCCTCGCCCAATTCGCCGGCGAGCTCGCC 2609707 33 100.0 36 ................................. TCCCGCATCGGCGACGCCGCCGCCGACGTCGTGACC 2609776 33 100.0 35 ................................. CGCTCGAATAGCCGGTGAGCTGCGTCCACGCGATG 2609844 33 100.0 34 ................................. CCGCTTATCCCAGGCGTGGCGACCATCAGCCTCA 2609911 33 100.0 34 ................................. TGTAAAAACCATTGGCGATGAACACGGGAATCAG 2609978 33 100.0 34 ................................. ACGTGAAACATCCGCCGTGGAACCCGACGAACCA 2610045 33 100.0 34 ................................. GACGAGCGTTGGGCCAATAAGTTCGCGGCTTCCC 2610112 33 100.0 34 ................................. CATGTTGAACATGATCGGCGGCGGTGGGCTGGGG 2610179 33 100.0 34 ................................. ACGGTCACGCCGGAGAACGGGCCTATCAGCGACG 2610246 33 100.0 32 ................................. GTCCTCAACGTCGGCGATCCGGAAATCATCGA 2610311 33 100.0 33 ................................. GCACAGAAAGAGGGCATGACGGCTTGGACGACT 2610377 33 100.0 34 ................................. ACCGATCCAGACGGTCATTGCCTCCGTCATCAGA 2610444 33 100.0 34 ................................. GTCGAGCGCGTCGACGTAGGCTTTGGCTTGGGTC 2610511 33 100.0 34 ................................. CTTTCTTTATGCCGTCCAATAGGCGTTGGCGGCG 2610578 33 100.0 35 ................................. CCATGCCGCGGTACTTGTCGCGCATGTCCTTGAGC 2610646 33 100.0 33 ................................. TCAGGCGACACCTGGAACGCGTTGGCGACGGCG 2610712 33 100.0 34 ................................. GCGGCGTTGATGTCGGCCAGCCATTGCGCGGTGA 2610779 33 100.0 34 ................................. CAGCAGTGCACGTACATGGGCTGGTTGGCGTACA 2610846 33 100.0 35 ................................. TTGACCTGCGTGGGCGTGATTCGGCGTCCCACGGT 2610914 33 100.0 35 ................................. TCGCCGGACCCGTCGCCGTTGAGCAGCTGCGTCGT 2610982 33 100.0 35 ................................. AATGGCCTCGTGACCGCGCGGCCCCGCAGGCATGG 2611050 33 97.0 34 .............T................... AGCTCGTCCACGGTCATGGAGGAAAGACCATCCT 2611117 33 100.0 33 ................................. GTCAAGCAGCAGGCCTCCGCGTCCGCCTGACCT 2611183 33 100.0 33 ................................. CCGTACCTGACGCACCAAACGCACCTCACGACA 2611249 33 100.0 34 ................................. TCCTGCTCCTGCGTGCTCGCGCCGCCGGCCAACT 2611316 33 97.0 36 ................................T CGTTCCGGCCAGCGGCGACAACGTGTTCATTGCCTA 2611385 33 97.0 35 ................................T CTCGTGCCGAAGCGAGGCGGGGTGTTCTGCCGCAA 2611453 33 97.0 34 ................................T CGGTAGTCGGGCTCCCGCACGCCGATGGTGCAGG 2611520 33 97.0 34 ................................T GACGAGGAGTCCGGCTGGCCCGACGGCGACCGCG 2611587 33 100.0 33 ................................. TACGACATCGACGAGGAGAACTCCACGCCGAGA 2611653 33 100.0 33 ................................. TCCCTCCTACGACGACTTCGCCGCGTTCGGCAT 2611719 33 100.0 34 ................................. AAGGAGACGTCCGTCCGTCAGACCGCTACGGTCA 2611786 33 100.0 35 ................................. CTTCCAATATCCCCGTATTGCGCAGGGGCGCGGCG 2611854 33 100.0 35 ................................. CTTCCAATATCCCCGTATTGCGCAGGGGCGCGGCG 2611922 33 100.0 35 ................................. CTTCCAATATCCCCGTATTGCGCAGGGGCGCGGCG 2611990 33 100.0 35 ................................. CTTCCAATATCCCCGTATTGCGCAGGGGCGCGGCG 2612058 33 100.0 34 ................................. TACCGGGCCTGCGTATGGTTTGGCGGGGCCTCCA 2612125 33 100.0 34 ................................. CTCGTGTTGGCCCGGTCCGTGGATCAGACGGACG 2612192 33 100.0 35 ................................. TCAAGCAAATAGACATTCGTGCACGGGGTCGGGGG 2612260 33 100.0 34 ................................. GAGCAGTGGGCCGACACCGTGACCTCGGTGGAGG 2612327 33 97.0 33 ................................T AACAAGGACACCGGCATCGTGCGTTCCCTGGGC 2612393 33 93.9 33 ...........................T....T CGTTCCGCTGGTCGCAGTGGTGCTTACGGTCAG 2612459 33 97.0 34 ................................A ATGATCTGGGCCATGGCGAGCTTGGTGAGGTCGG 2612526 33 81.8 33 .G...T.......T.....A.A..........T GCTTGCCCAACCGGGCGAAAAGAAAAAACCGGG 2612592 33 87.9 33 ...................A.....G.T....T TCCACGAACCGGCGCTGGATCCGGGTCGGGCCG 2612658 33 78.8 0 ...T.........T..............ACGCG | ========== ====== ====== ====== ================================= ==================================== ================== 85 33 99.1 34 GTCACCTGCCTCACGGCAGGTGTGGATCGAAAC # Left flank : GCCACGAGCCGGTCATGCACGCGCCTGGCGGTGTGGCGCTGCTTGCCGGGCATGAGCCGGTCCGCCTCCAGCCAGCCGTCGACGATCGGCTTGTACTCGTCGAGAATCGACTTCACCCCGCGCCTGGCGGGCGGTTTCGGCGAGCAGTCCTCCATGCCCGCGTACTTCGCGACCGTGCCCCGGTCCACCCCGAGCCTTCTGGCGATCTCCGCGTGCGGCAGGCCCTTCGCGTCGAGCCTCCTGATATCTTGCTGTTGGGACATGGGTATCGTCACTGTCCTTTCCTTCCCCGGGCCGGCGGCAACCGGCCCTGGCTGCTATTTGGTTTGCAACCCGGGAATCTAACAGGCGGAGCGAACCCATGTCTCCTCTCAACATCAGGGATGACTATTCTGCGGAAAAACAGCTGCACATCAAGCGGGAAACACCATGACACTCCTGCCTAAAGAACATTGAACATAAACACCAGAACCTGAACCATGCATGCGAGCCCGTCACCT # Right flank : GAAGAAGGCCGGCCCGTGTGGGTCGGCCTTCCGGGATGGCGGGGGAGCGAATGCTGAGAAGCGCCGCTACTTCACGCCTTTGATCATCAGGATGAACACGCAGCCGAGCAGCGCGAAGAAGATGGAGATCGGGAACGCCGCGGCGTAGCTGAGGTTCAGTGTGATGACGCCCATCACGACCGGGCCGAGCATCTGGCCGATGGTGGTGGCGAGGTTGAGGATGCCGAGGTCCTTGCCGGCCTCCTCCTTGCTGGGCAGCACGTCGACGTTCAGCGCCTGGTCCACGGAGGAATAGACGCCATATCCAAAGCCCGCGATGCCGGCGTAGAGGAACATTCCCATGGTGGTCGGCATGATCCAAGGCATGGCGGTGCCGATGGCGAACAGCACGGAGGCGACGACGACGGGCACTTTGCGGCGTCCGATGAAGTCGGAGATGGGGCCGGAGACGATGGATCCGGCCAGGGAGACGACCATGAGGATCACGGACATCGTGGCCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCTGCCTCACGGCAGGTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.10,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 2656346-2663041 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062938.1 Bifidobacterium eulemuris strain DSM 100216 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 2656346 35 100.0 37 ................................... AAGCTCAAGCACCTACAACGTGAACAACCCAAGCGAA 2656418 35 100.0 39 ................................... ACTATAGCAGGCGGCACCGGTCGCCCACTGCTTCTCGAA 2656492 35 100.0 34 ................................... AGTGCAGGACGGTGAGTATTCGACGGACAAGCGC 2656562 35 100.0 37 ................................... AGACAATCAGCGCGCCGGATACGATCAGGCCTGTGGT 2656635 35 100.0 36 ................................... AGTAACCTCAAAAACACCGAAGGACAACCGCAACGC 2656707 35 100.0 35 ................................... AGAATTTGAGATTGTCGGCCCACGAGCGGATCTGA 2656778 35 100.0 37 ................................... AGACAATCAACGCGCCGGATACGATCAGGCCTGTGGT 2656851 35 100.0 36 ................................... ACGTAGCAGCTGACGACGGCGCGGTATCGGCCATGA 2656923 35 100.0 37 ................................... ATGTATGGCAACGAGGTGCGATCATGCCAAGACAACG 2656995 35 100.0 35 ................................... AAAGGAATATCATCAACAATACCGTGGCGACCTGT 2657066 35 100.0 34 ................................... ATACGAAACACAGATTTACGCTTGGGTGCAAAAC 2657137 35 100.0 35 ................................... ATTTTATATCACCGTCGGTGACGATGAAGTCAGGT 2657208 35 100.0 36 ................................... ATTCCATGCGAGCGTCTCGTACCGGCGATTGAAATA 2657280 35 100.0 35 ................................... AATCGACATGCTGACCGCCCGCCTGGAGGAGGGCA 2657351 35 100.0 37 ................................... ACGGGGTAGCGGATACGACATCAGACAGGCCGTGGAC 2657424 35 100.0 35 ................................... AAGTGCGAATGGAGATGTCGGCACTTTTGAAGTAC 2657496 35 100.0 35 ................................... AAATGGCAGTGGACAACGCGACGATCATCAACCGA 2657568 35 100.0 36 ................................... AGTATACAGCACATTGATTAATGTTTTGCGAAATGC 2657640 35 100.0 45 ................................... ATGTTCGACAGGCCGAGCAATGCCATGACCTCGCGCGGCACCGGA 2657720 35 100.0 36 ................................... AAACGATTACCCGGAATTGGAATCCCCGCGCAGGTG 2657792 35 100.0 37 ................................... ACTTTAGAGCGCCAGCGCTAATGCCGCCAGCCATGAC 2657865 35 100.0 36 ................................... ACGCATCGAACGGTAGGGGCGGTAAGATTTCACGGC 2657937 35 100.0 35 ................................... AGATCCGCAGGCCGACTATCTGGGCGCGGATAATT 2658009 35 100.0 37 ................................... AAAGGTGCATCTCGACGCCGCGCCAACCGACGAGACC 2658082 35 100.0 35 ................................... AGAAAACTGCTCAAGCTGGGATGTCAACAGCATGT 2658153 35 100.0 35 ................................... AAGTTCCTGCAAGTACTGGTTGGTGTTGGTGGAGA 2658224 35 100.0 37 ................................... AGGACAATGATGGCACCGTGGGTACCGCGTACACGAA 2658297 35 100.0 35 ................................... ATGATTACGAGGCTTACGCGTGCTTCATGCATGCG 2658367 35 100.0 37 ................................... ATGATAGCCGGTTTGATTGTTGTCCGCGTACTGGGCG 2658439 35 100.0 39 ................................... ATGGAATCCCGCCACACAGGGGCTCGGCTTGCGTGTGGA 2658513 35 100.0 38 ................................... AGTCGAGGAAAAGCGGACCTTCCGTTAGGCAGTGGACC 2658587 35 100.0 36 ................................... ACGCTGTAGTTGAAAGCACCTTAAAAGATGAATTCA 2658659 35 100.0 37 ................................... ATTGTTAGCCATTTAAGTCTCCTTATTTTCGGTCGCC 2658732 35 100.0 36 ................................... AGCGAATCGTATTCCACACTGTCGAACGCTTCGGCG 2658804 35 100.0 36 ................................... ATAATCATGGGCAAGCCAGCGACGCAACGCGCGAGG 2658876 35 100.0 36 ................................... AGACAATCTGTGAGGACAAGTATGGGACGGAAACGA 2658948 35 100.0 41 ................................... ACGGTAATGCCGTCCACCGACATTCCACCCCTCAAACGGGG 2659025 35 100.0 40 ................................... AAGCACCGACGGCATCCAGGCATGGTGCCTCGACAACGCC 2659101 35 100.0 36 ................................... ATTGAATGGGTATGCCCGTGCAGGTGCCACATGTCA 2659173 35 100.0 36 ................................... ACTGAACGCGAAGGTCCAGGAGTTCGCGATGGGCAA 2659245 35 100.0 38 ................................... AGTAACCTGATGCCACCGGTCACGTAACAGGTAACGGC 2659319 35 100.0 36 ................................... AAGATCCTTCTCCCACGTCGAGGCGTAGCCGGTGAA 2659391 35 100.0 37 ................................... ACCGTACAGCGTCGTGGAATGCACGTGCCTTAACGGA 2659464 35 100.0 35 ................................... ACAAAACTCAATCACACTGACAGGCATGACGCTTG 2659535 35 100.0 35 ................................... ACAAAACTCAATCACACTGACAGGCATGACGCTTG 2659606 35 100.0 34 ................................... ACTGTTGGATAAGTTTCTGACGGCGAAGTCGCAG 2659676 35 100.0 37 ................................... ATAAAATAGGGCATGATCTCACGCATGGTCTGCCCCA 2659749 35 100.0 34 ................................... ACATTCGGGCTGGCCGTAGGGGAGTGGGAGACTG 2659820 35 100.0 38 ................................... ATTCTCTTAGGAGACGGTGATTTCGAATTGGGGTTGGC 2659894 35 100.0 37 ................................... AGAACGTGCGCATCAGCAGCGTCGAAACCGACGATCC 2659967 35 100.0 38 ................................... ATGGGATGCAGAATCACAAGAGGAAAGAATCCAATACC 2660040 35 97.1 38 .G................................. ATGGGCGACCCATAGTCCGCAATTATGTTTCGCGGCGA 2660113 35 100.0 36 ................................... AAATCAGGCGTATTCGCTATTGTCCGTGTGGGATGG 2660185 35 100.0 34 ................................... AACTGTTGATCTTGTGCGTGACGGTAAAACGATA 2660256 35 100.0 36 ................................... ACGTATCGTCGGGGAATTCGGACACGTCGACGGTGC 2660328 35 100.0 37 ................................... AGGTATCGATTCCATCACCATCCATTGGTGGGATGAC 2660401 35 100.0 37 ................................... AACGCAGAATCGCCGCGATCAGTACGCCATCTCGTGG 2660474 35 100.0 35 ................................... ATTGCCCAAGTCCACCGACTTCGTGTGGTTCATGC 2660545 35 100.0 37 ................................... AGAGTAACTGCCGCTCAAATCGAGGGAACAGAAGCAT 2660618 35 100.0 37 ................................... ATCGTACTCGAACACGCCCACCGGCGTCAAGACCCGC 2660691 35 100.0 34 ................................... ATTGCGCTACATTCCATAATTCGATTTCGTTTAA 2660761 35 100.0 37 ................................... AGCGAGCAATGGTGGCGCGACCACATCAAAACCCTGC 2660834 35 100.0 37 ................................... AGTTTTGCAGAAGACATGCGAGAAAATAATTCGCACA 2660907 35 100.0 37 ................................... ATCCGACGTGTTCAGCCCTGTGCTGCCGCAGTCCGAA 2660980 35 100.0 37 ................................... ATGGCCATGGCCATCGCCACGGCTCTGTTGAACGCCG 2661052 35 100.0 38 ................................... AGTCGAAAATCTGTTCGCGAAACGCCCGAACATTACCA 2661126 35 100.0 35 ................................... ACAGATCTCCTGCACGCCGTCGGGGAGGTCTTCGA 2661197 35 100.0 37 ................................... AGAGGGCGTGTAGCTCGGTGTGTACGACTGCTGGTAG 2661271 35 100.0 36 ................................... AGCTAACCCCTTCCACGTCGCCTTACATGCGAAAAT 2661343 35 100.0 35 ................................... AGGAAGCACGGTGCAGAACATCGCATACAAGTGGC 2661414 35 100.0 36 ................................... AGAGGCCGTCGAGGCGGCGGACACCACCAAAGGCTC 2661487 35 100.0 35 ................................... AAATGAGCGGGCGGGCAAATGGGAGACCGACACCA 2661559 35 100.0 38 ................................... AGGGTTAAGTGGGTCACAAGCATTGCCCAATAGATAAA 2661633 35 100.0 35 ................................... AACCGTCGACCTTGTGCGCGACGGTAAAACGATTC 2661704 35 100.0 36 ................................... AGGTTACACGTGGCGCAACGTCGAGGAGTGAGGCCT 2661776 35 100.0 36 ................................... ACTGCATATTTGGAAGATCCTGTCCGTGTCGGGATT 2661848 35 100.0 38 ................................... ACGGCAGAAGCGCTGCACGTTGGTGCATGAGCTGATGC 2661922 35 100.0 36 ................................... ATTGAACGTCTGCGTGACGTTCGTGATGTTCCCACC 2661994 35 100.0 34 ................................... AGATGGATTCACGTCGGGCGCATGCCATGTCAAC 2662065 35 100.0 36 ................................... ACTGGGCTCGGGTATCTTCGACGCGATAGCCGATCC 2662137 35 100.0 37 ................................... AACAGAGCATCACCGAATTGCGTGGGATTCTGAATGG 2662210 35 100.0 36 ................................... ACAGTACGCACTACGGATTGGAGGACTGCTGACATG 2662282 35 100.0 37 ................................... AACGGTGGACATGGTTAGTTTCCTTTCTGTTGGATTT 2662355 35 100.0 38 ................................... AGAGCGCGATTGGCTCCACATTGTCAGCCGTAGGCGGA 2662429 35 100.0 37 ................................... TGGCATGGGACGGCGCGCAATGACCTCCGCCGCGCCG 2662502 35 97.1 37 ...........C....................... ACTGTCGTGGATACAAGGACACGCGCAAGCAGCCTCG 2662575 35 94.3 37 ....................G.......G...... AACGCACTCGTGCAACTTTCTCACCGTCGTCGCCGAC 2662648 35 88.6 35 .....C.....C.T.........G........... AGCGAGGTCGACGACCTCGCCGTCGCCCGCGACGG 2662719 35 91.4 36 ...........C......T.........G...... ACCGTCCTCGTGGGACTGTCTGCACGCCATGTTCCA 2662791 35 91.4 36 .......A...C...G................... AGTGCATTGCCCTCTCGGATAGGCGCGGCAGACCGG 2662863 35 94.3 38 ...........C.G..................... AATGGGAGCAGGGCTTAGGGGATGATGTGAGATTCAAA 2662936 35 88.6 36 ...........C...G...TG.............. GCGGGACAACAACGACGGCGGCTGAGGCGGTATGAA 2663007 35 88.6 0 .G............C...........C......T. | ========== ====== ====== ====== =================================== ============================================= ================== 93 35 99.3 36 ATTGCTGGAGTTTCTACTCCAGCACTTCATTGAGG # Left flank : TATCTGGTGGCATATGACATCGCTGAGGATTATCGACGTAATCGTGTAGCTAAAATACTGCAAACATGTGGCGAGCGACTGCAATACAGTGTTTTTCTGCTTGAGGTGAGACCCACAAAAATGCTCCGAGTTAGGCAGCAACTTGAATCAGAAATGGATCAAAGATTGGATTCGATAATCGTGTGTCCTCTGGGCGCAAGCAGTCAGGCTAGTCAGGAAATGTTGTTCTTGGGAAGGCGAACGTACGAAGACATAGCCACTCCTACAGTGATTTAGCGCCTAGTGTGCTTGAAAAATGACAACTGAAGAGTGTGAATTATCATCGAATATGTTTGCGAGATGTGAATCATCTAGTCATACGCCGTGAACTGCTCGCAGGTGTCTTTGTGCCCTTCGTGGGACGCTCGTGAGTAATAGGTGTTTCATTGCTGGCTTCTAGATATCCACCTCTCGCGGATCGACTTAGAACGTCGGTCTTTCCGGTCAGGTAGGATAAAGCG # Right flank : GAGGGCCGAACTCCTGATAGCCTAACTGTTATGACACAGTCTCCCGTTCCCGCTGCTGCACCGAACTACAACCGTACGATGATCGCCTGTTTCGTGGGCTACATCACTCAGGCGGTGATCAACAACTATATGCCGCTATTGTTCGTCACCTTCGCGGCGACGCTGGGCATCGATATGGCGCGCCTGTCCGCGTTGATCACGGTGAATTTCATTACGCAGCTAGTAGTGGATGTGTTGGCCGGGCGGTTTGTGGATAGGATCGGTTACAAGCCCTGTATTATCGCGGCGCATGTGTCGGCCGCTGCGGGACTGCTGGTGCTGGGACTGGTGCCAACACGTGTGTCTGACCCATACTGGGCCATTCTGGTGGCGATTTTGCTGTATGCCTTGGGCGGCGGACTGATCGAAGTGATGGTCTCGCCGATTGTGGAGGCCTGCCCCTCCGAGCACAAGGCCAAGGCGATGAGTCTGCTGCATTCGTTCTATTGCTGGGGACAACT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCTGGAGTTTCTACTCCAGCACTTCATTGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //