Array 1 155883-157050 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQHB01000049.1 Pseudoalteromonas luteoviolacea DSM 6061 strain CH130 chromosome II, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 155883 28 100.0 32 ............................ AGTTGAACTGCACCTATTTACACGAGGGGCAG 155943 28 100.0 32 ............................ CATACAAGCAGCTTAACGACAGGCTTAGTGAT 156003 28 100.0 32 ............................ ACTTTCAGAAAATGAAACATTAGACGCTTCGT 156063 28 100.0 32 ............................ ACCACGGGCTTGGTGATGACGTGATTGTATAT 156123 28 100.0 32 ............................ ATTAAAGAGCTTGTAGGCAAAATGAGAGAGCT 156183 28 100.0 32 ............................ GCCAGGAATGCCCAAATAGCAGACTTTTGATG 156243 28 100.0 32 ............................ AATGAGAAAAATCTAGATGCGGTTGTTAGCAA 156303 28 100.0 32 ............................ GTGATTGTGAGCGTTATACTTATCTCTCATAG 156363 28 100.0 32 ............................ GTGATTGTGAGCGTTATACTTATCTCTCATAG 156423 28 100.0 32 ............................ AGCCCTAAGTGCTGGTAAAAGCCTGTACCAAA 156483 28 100.0 32 ............................ AATGATAACGTGAAGGTTTACAGTATTTCAGA 156543 28 100.0 32 ............................ TGACTACCAGGATATCAAACTCATGAAAATCA 156603 28 100.0 32 ............................ GCTAGAAGGTTCTGAAACTCTTCGACAACTCC 156663 28 100.0 32 ............................ AATAACAGCGAGTGTTCTAGACCCAATTAATT 156723 28 100.0 32 ............................ TTCTAGAAAACTATTCTCTGGCTTTGGCTCTG 156783 28 100.0 32 ............................ ATAATAAACGCATCGGCCAAGTTTGGGGAATC 156843 28 100.0 32 ............................ ATTTGCTCGCGCTTGCCAACTTTGGCCCGATA 156903 28 100.0 32 ............................ AGTCCAAACTCCGCTGCCAGATCATTAGAAAC 156963 28 100.0 32 ............................ CCACACATCATAAGGTGATGGTTGCACCGGGA 157023 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.8 32 GTTCACTGCCAAGTAGGCAGCTTAGAAA # Left flank : ACCGACACCAAACGCTTTAAACACTATGCCAAGGAAGTCGAACTCACCAGTTATATCAACCAGTTTTTAGACGACGACGCATTTCGTAATATCGCCCTTGGCCAAAACTATTTTGACCTGATGAATCTGGATTTCGAAGCACCAGAGATTTGTAAAGGGTGATGGGATGCTTGTTTGAATGAAAAACAGCAAGCTATAAAAGAGCGTGTGGGAGTAATTGAATGCTGAATCTTTTTTAAACAATAAAAGTGCTGTGAAAACATTGACTAAATGTATTTACTCGGGGAGAAACTGATTTTGTGCTTTAAGAATTTGACAAATGTAAGGTGCACTTAAACTTGGTGTGTACGGCTTTCAGTGGGGAGTTTTACCTTGTTTTAAACAAGGTGAACTTAGTTTTTAAAAATCAATGGCTTATATTTTTAGTAAAAAAATAGGGTATTTTGAGAAAATCTTTACTTAAGGGCTGTTTTTGTATTACTTTTTGGATATTTCTTATA # Right flank : ATTAAATCAAATTATACATCAGCGTAAACACATCCCTGATGACTCTCACCCAGAGAAAGCATCCATGCTTCCTCGTTCAAACCTAGCCAAGCTGCGCGGACTCGCTTGACTCGAGACGGTTTTCACCCACATAGGCAGCTTAGGCGATGAGTAACCGAAACGAAGTTTCGCAGCGCGAGGAGTGAGAGGCTTAGAATAAAATCATGGATGACCGATGTAATCAAGCTGCATGTAGGAGGGTATGTAGCTATTGCTATACCCTCACTGTTGTATAGTCTATTTAGAATACTCACTCTTTAGTTGTTGCTGATCAATGACAGCCTTTGCTGTCTCTGATACATTTATTTTACGTTTAATTTACTGAGATTTGTGTATGCAGGCTAAGGAAGAGCAATATTTTAGATATATTGAGGCGGTGTTATTTCGGCAAGGAGAGATCCAAACAGGCACTTTTCAAGATAAGTTCAAACTATCAAGACCCAGTGCTAGGCGTTACCTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCAAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCAAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 167085-169237 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQHB01000049.1 Pseudoalteromonas luteoviolacea DSM 6061 strain CH130 chromosome II, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 167085 28 100.0 32 ............................ ATCCAGCTTGATATGTCTAAGAATCGCGAGCT 167145 28 100.0 32 ............................ ATCAAACAATGTATTCAATGTTAACCCCATAT 167205 28 100.0 32 ............................ ATTCATGGTGGCGATACCTTCGCGCATATCCC 167265 28 100.0 32 ............................ CACCAACTGGCTATCTTCGTAAATCTCAGAGA 167325 28 100.0 32 ............................ CTGAGCAGGTGCTGCTTCATATGTTCTGTTTT 167385 28 100.0 32 ............................ AACACCATCAGCCATTGAGCGTGTTATAGTTT 167445 28 100.0 32 ............................ AAAAGTGTCAAACGGAGCTGCGGTATCTTCTT 167505 28 100.0 32 ............................ TGAACGCGATATTAAACAAAAGTTTCTCTGCT 167565 28 100.0 32 ............................ AGTTTCAACAATGCAGTAAACACTATCTAGAG 167625 28 100.0 32 ............................ GCGATTAACAGTGCGAGGGATGACGTTCTCGT 167685 28 100.0 32 ............................ ACCCATCAAACGTTGGTCATTTAATAGAGAGC 167745 28 100.0 32 ............................ TTGCTCGTCTTCATCTTCACAACCGTCATAGC 167805 28 100.0 32 ............................ TATATCCACTCTCAGGTAGCCATCTGCATTCT 167865 28 100.0 32 ............................ GTTGTAGGTGCTATCGGCTTATCAAAAGTTTT 167925 28 100.0 32 ............................ TTCAAGGTATGCGGTAATGCGATGGTTGCAAT 167985 28 100.0 32 ............................ GTTATAGCCAGTGGCCATGATGTGAATAGTCC 168045 28 100.0 32 ............................ TGTTTTGTACGATATTTCAATAGCTTTTCTTT 168105 28 100.0 32 ............................ TGTTTTGTACGATATTTCAATAGCTTTTCTTT 168165 28 100.0 32 ............................ TGTTTTGTACGATATTTCAATAGCTTTTCTTT 168225 28 100.0 32 ............................ TTAGCAAATCTGCACCACTCACCAAAGCTGCA 168285 28 100.0 32 ............................ ATCCTCGCAAAAGTCGGCAATTTCGATATTTT 168345 28 100.0 32 ............................ TGCATCATAAATTCAAAAACAATAGAGAGCAG 168405 28 100.0 32 ............................ ACAGGGACTAACGTACCTATTACAGTAGAAAC 168465 28 100.0 32 ............................ TCACTTACCAGATTTGCATGAGAAAAAAGAAA 168525 28 100.0 32 ............................ ATTAAAACATGGCCCGAGCACAACTATAGACT 168585 28 100.0 32 ............................ TCAGCGCATGATTGTTGGCGGAGATGTTAAGA 168645 28 100.0 32 ............................ GAACAAACTGACAACTTAATGATTTTGTCGAG 168705 28 100.0 32 ............................ TGTAATTGTATTAATGAGCGCATTAGCTTTAG 168765 28 100.0 32 ............................ ATTGCTAGCCTTTTCAATAATTTCAATTAAAG 168825 28 100.0 32 ............................ GAGCTCACCAGATTATGAGCAAAGAACATTTA 168885 28 100.0 32 ............................ ATCATCTGTGCCACATGGCATGCGGTCAACAA 168945 28 100.0 32 ............................ GCACCAGCCACGCCAGCCGCACCAGCCAAAAC 169005 28 100.0 32 ............................ TAGCCTTATTGTTAAGCTCAACCTCTCTTAAC 169065 28 100.0 119 ............................ TTAAATCAAATTATAAACCAGCGTAAACACATCCCTGATGACTCTCACCCAGAGAAAGCATCCATGCTTTCTCGTTCAAACCTAGCCAAGCTGCGCGCACTCGCTTGACTCGAGGCGGT 169212 26 89.3 0 T.....--.................... | ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 35 28 99.7 35 CTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : CCAAAGAAGCCACTTGGGTGAGTTTTTCTCGTCAACATATAAAGTCGCCTGAGCGTATTGAGCGTGAGATGCAAAAAAAGGCTGAACTATGGTCTGCTAAAAGTGGTAAATCACTTGAGGAGTGCTTACTTGCACTTGAAAAAAGCAAACCAGATATCCATAGCAAATTGCCATTTATTTATTTGCATAGTCAGCAAACGAAAGCACGAAAGCCGGATAAAAACAGTAAGTTCCCAATGTTCATAAAAAAGCAAGAAGTGGATACTCTTTATCAAGGATTATTTGATTGTTATGGCTTAAATAGTAAACGCAATAAAGATAATGACATTGGCTGCGTACCTCACTTTTAACCAATAAAGGGTGTTTTTACCCTTTATTTTCGCTCTTTTAAAATCTGCATATAATACAAGGAGTTGCGATAGGTTGTTTTTAACAAGGTAAAAATAGGATTTTTACTTTAATGGTCTGTTGCAACTTATTTTTTTTTCATTTACTCTATA # Right flank : ATTAAATCAAATTATAAACCAGCGTAAACACATCTCTGATGACTCTCACCCAGAGAAAGCATCCATGCTTTCTCGTTCAAACCTAGCCAAGCTGCGCGCACTCGCTTGACTCGAGACGGTTTTCACCCACACAGGCAGCTTAGGTGATGAGCGACCGAAACGAAGTTTCGCAGCGCGAGGAGTGAGTCGCTTAGAATAAGGTCATGGATGACCGATGTAACCAAGCTCCATGGAAGGATTTCAGCTCCGAGTTAGCTATGTATTCCGCTTCACTGCCATACAGGCAGCTTAGAAATTGAATCAAATTATACATCAGCGAAAACACATCCCTGATGGCTCTCACCCAGAGAAAGCATCCATGCTTTCTCGTTCAAACCTAGCCAAGCTGTGCGCACTCCCTTGACTCGAGATGGGTTTCAGCTTCGTGCTAGCCAGAGTTTATGTTTGGGTCTATATATCGGTCCCATAAAAATTGTAATGGGGGTTTCCACTTTGGCGCT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //