Array 1 913333-914031 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054827.1 Salmonella enterica subsp. enterica serovar Adjame strain 389598 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 913333 29 100.0 32 ............................. AACGCTTTAACTTCCCTATCTCTAAAATATGT 913394 29 100.0 32 ............................. TGTCGGAATACCATTTATTTTGTATATTTATA 913455 29 100.0 32 ............................. TTCGATTACAGTAAAATTTATGTTTATTCAAT 913516 29 100.0 32 ............................. AGGCCACGCCGACCATTGGGCAGGTTGCCATG 913577 29 100.0 32 ............................. GATCGAACAAAAAACCTGTGGTCATTGAAACC 913638 29 100.0 32 ............................. ACTGTTATAGTGCATTTTCCCGTCTCGCAGCT 913699 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTA 913760 29 100.0 32 ............................. AGAATGTGAATCATTCTGTCACGAACAATAAT 913821 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 913882 29 93.1 32 A...........T................ GCCCATACATTAAAAATCGTGGACGCCAACGG 913943 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 914004 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGTCCCGGCAAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 930167-932149 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054827.1 Salmonella enterica subsp. enterica serovar Adjame strain 389598 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 930167 29 100.0 32 ............................. AGGCATTACAATCAGCGACTTTAAGTAATGTT 930228 29 100.0 32 ............................. GGAATTATCAAAAACAAGGGGAGGTGTTAATC 930289 29 100.0 32 ............................. TTCGCTTGTATTACGAATAGTAGGGGTTGAAA 930350 29 100.0 32 ............................. TTAAAGCGTTCTTATTAACAAATAATAATAAT 930411 29 100.0 32 ............................. ACTGATAAAGAAAACGTAACTGAAACAGCTAC 930472 29 100.0 32 ............................. GGATTTACACGTTATTTAAATATTAAAAATAA 930533 29 100.0 32 ............................. AAATAAAATACATTAATAATGACGTAATAATA 930594 29 100.0 32 ............................. CAAATACACCCTGATAATATTGGGAGTTGGGG 930655 29 100.0 32 ............................. TAACTACTGAATTTCAAAACGCCGCGACTCTT 930716 29 100.0 32 ............................. TTGCGCTGTTCTATTGGTGGCAATTCTCTGAA 930777 29 100.0 32 ............................. AATCTGTCCGGTATCGACTGCAGTAAACCTAT 930838 29 100.0 32 ............................. AGTTTAAATCATTCATGGAGGCTATCGGGACA 930899 29 100.0 32 ............................. CCGTGCTCATTACAGCACCCAACGTTACGCGA 930960 29 100.0 32 ............................. ATAGCAGAAAGCGTTGATCGCGAAGAATGGGA 931021 29 100.0 32 ............................. AAAAAATTGATAATATCAATACTGGCGATTGT 931082 29 100.0 32 ............................. AACTGGAAAAAATGGGCGCGCCGGAACTGGTA 931143 29 100.0 32 ............................. ACACTGAACCTCCTCAATAGGGCAGGTCGTTC 931204 29 100.0 32 ............................. TAGTCCCTACACTGGATAAATCAGGATGTGAC 931265 29 100.0 32 ............................. CATATAGTCATCTTACGCTAACAACTTGTTAA 931326 29 100.0 32 ............................. ATGGCAGCATTAGGCGCTCGCGTTTTGCAGGA 931387 29 100.0 32 ............................. CATTCTATTTTTATAATAATTTAGAATACGCT 931448 29 100.0 32 ............................. GCAATGAAAATGCATCTGACACATCAACATAT 931509 29 100.0 32 ............................. TGGTCAATACCACCCCCGGCCCGCGCTATTCC 931570 29 100.0 32 ............................. GTCAGAGTTCAACAGGTGGCGAATTATGGTGG 931631 29 100.0 32 ............................. TCCTACAGCGTCGTAGAGGGTTCAGCGACGAT 931692 29 100.0 32 ............................. AAAACGACTAATGCTGCCAATGTTGCGTATTT 931753 29 100.0 32 ............................. ATGACATGACGCCTGTAACGTTTGATATGGTA 931814 29 96.6 32 ............................T GAACGCCAGTGTTTAAGACATTTTTTCATCTT 931875 29 100.0 32 ............................. CCCTTCAACTATGAGGGGCTTTTTGCTATGAA 931936 29 100.0 32 ............................. ATTCCGACACTCAGGGAATTACCGATTCAGCA 931997 29 100.0 32 ............................. GGTATCGAATACGACATTACTTCCAAACCAAT 932058 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 932120 29 100.0 0 ............................. | A [932147] ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCGGCCAACACAGAATCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAGCGCTCTTTAAAAAGATAAATTTGTTGCTTATAAGTTGGTAGATTGTTTTTTTGTGATAATTCATTGATGTGTAAGTATATTTTTTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //