Array 1 27536-26848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYR010000019.1 Clostridium botulinum C strain IZSVe-TV_6433_6_13 NODE_19_length_58107_cov_80.9936_ID_108245, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 27535 29 100.0 36 ............................. GTTATTTAAGATACCTTTTACATACTCAATGTTTCT 27470 29 100.0 38 ............................. TCGAGACTGGAGTGGTAAAGTTGCTTTAGTAGATACTA 27403 29 100.0 37 ............................. AAATTAAATGTTGAAAATTCTTGGTTAACGGATTCAT 27337 29 100.0 36 ............................. TGAAAATTGATATTGAATATATAAAAGATAAAGTTA 27272 29 100.0 38 ............................. ATTAAAATTGAAGTACGACTTGTACTAACTGCATCTGC 27205 29 100.0 36 ............................. TGAAAATTGATATTGAATATATAAAAGATAAAGTTA 27140 29 100.0 37 ............................. CCTAAAAAACAAAAACACCCTAGCCAATAGGCTTAGA 27074 29 100.0 38 ............................. AAAAGGTTAAAATCTGCACTTATAATTCTAATTGGTAC 27007 29 100.0 37 ............................. TATCCGAATTCAAAGTCGCTTTGTATTCTATCAGCCA 26941 29 100.0 36 ............................. TCTTTCAATATCTTCAACTATATTTGCAGTAGGATC 26876 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 99.7 37 GTTTTAGTTTAACTATGTGAAATGTAAAT # Left flank : TAATTATGAAGAAGGACAAAGAGAATCTCAAGCTGATTTTATATGCAAAAAATGTGGTTATAAAGTTAATGCTGATTATAATGCAGCTAGAAATATCGCTATGAGTAATAAATATATAACAAAAAAAGAAGAAAGTAAGTATTACAAAATTAAAGAAAGTATGGTATAATAAAACATAGTTAAACTAATAAAAACAGGGCGATTTAACGTCCTAAGGCTGAGAGAAGTTTTTTCTACTCGGCAAGGGTTAATCTCGATTGTTGTGTTACCGATCGAGCGTTTCACAAAATGCGAGAGAAATCTCGCATTTTTAATTTTGCAGTAAGGCTAGTTTTTATATAAATATGCTATAACCATTGATATTGCTAGGCTACAATAGGTTTTATTAAAAAAGCAAAAAACATTACTGAAGGTTCACTGCAAAATAGTGTATTTAAGTGAAAGTGAGATTGCTTGTAAAGCTAGGAGTATCAATATATTTATAAATTTCAAAATTTAGG # Right flank : GAGCATAGCAATAAATTTTGTTTCATTTTGTTTGAGTAAGTTTTAGTAAAATACTATGAAGTGAAGGGATACGTATTATGAAATTTATCGAATCAATAGATCCTTTTTTGATGCAGTTGGTTATTGTTCCGCTAATAGTAATTGGATTAGGTGTTTTAGTAGCTTATAATATTAAAAATATATTAATTGGACCTTTAATAACATTGTTTTTAAATAGTTTATATGAAATTTGGTATATAAAACACTATTGTCCTGGATCAGAAATTAGTTTGAGTTCTTGGAATATTATTCTTCCAATGATTTCATTTACAATTTCTTTGATTGTAGTATTAATTAGAGAATAGGGTAATATTTAATAAAGATTATTTCTTAGGCTAGGTGAAATGTAAATAACCTGGATTTTCTTTAGTTGCAATAATATCAATACTAGGTTTTAGTTTAACTATGTGAAATAGAGAAGCAGAATATAAAAGCTGAAACTACAAAATATCCATAATGGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTAACTATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 35885-35359 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYR010000019.1 Clostridium botulinum C strain IZSVe-TV_6433_6_13 NODE_19_length_58107_cov_80.9936_ID_108245, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 35884 29 100.0 37 ............................. AATTGAAGATTTTATTCAAAGATTAACACAAATTCAT 35818 29 100.0 35 ............................. CATTAAATAGGACCTGTGAAAATAGAGGAGATCAT 35754 29 100.0 37 ............................. CTCTTTCCACTTATTTAAATTATTTAATTCCTTGCTT 35688 29 100.0 36 ............................. CGCAGCTATATTAAACAACTAATCGAAAAGGATATT 35623 29 100.0 36 ............................. CTAGCCTTCATTCTGTGCAGAGTTTATAAAACTAAT 35558 29 100.0 35 ............................. CGTAGAAATTGTATCTGCATAAGCAATATTATTAG 35494 29 100.0 13 ............................. CGAGCGGTAAACG Deletion [35453] 35452 29 93.1 37 .....C..........A............ AATTCGAAATATCGGAATATGTCTAATATCTCGAACA 35386 28 75.9 0 .............T....T.-.AA..C.T | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 96.6 33 GTTGAGAATCAACAAAGGATATGTTTAAG # Left flank : AATATACTTAATAAAGATAAAGAATATGAGTTTACTGTTGAGGATGAAGTTATAGCATATGACCAGATTAAAAAACTTTATGAGGCTATGGATAAACTGGAACCATTGGAAAGGGAAATTATTAGCAGATACTATATTAATAATGAAAAATTTAAGGATATTGCAGAAGATAAAAAGCTTTTATATGATAGGACTATTTATTTGAGGAGGAGAGCCATTAGGAAACTTAGAGGGATCATGGAAAAAAAACAATAAATTTAAAATATTATCATATAAAAATTGAATAAATATAATCGTATGTGTTAAAAATATAAATAAAATTATTACCAACCATAAAGGTCGACTTAGCGTCCTAAAATTGAGTAGTACCAATAAGTCTAATAAGATTAGCATGGCAACTCTCAGTAAGCCTCAATTTGATTGGGAAGCTTTGTGCAGATGCTAGTAATAGCAAGGCGTACAATGATATATCCATATTTAAAAATGGCTTAGATACAGAG # Right flank : ATAATAAATAAGTTTAAAATTAGTGTTTATTGGAAATATTATAAATATATATAATATTTTAAGTAAGGAAGATAAAACATGAATAAATGTATAAAAGTATCCATAAAGAATTGTAAGGAACTAGATTATAAAGTTATGAGTGAAAAATTAAGAAATATACAATACTTAACATGTAAAGCTAGTAATAAAGCCATGCAAATGTATTATATGTGGGAGAATCAGAAAATAGATATTAAGAATAAAACAGGAGAATATCCTAATGATAAAGAATTATTTGGAAAAACCTATAGAAATGTAGTTGAAGGTGAAATGAAAACTATAATGAATACCATAAATACATCTAATGTAGGTCAAACCAATGCAATTATAATGAAAAAGTGGAATACTGATAAAAAAGAAGTTCTATCATATCAAAAATCTTTACCTAATTTTAAATTAAATATGCCTATATACATAAAAAATAAAAGCTTTTCAATAGTAAAAGGTACAAGTGGATATGA # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGAATCAACAAAGGATATGTTTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [91.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 42-401 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYR010000036.1 Clostridium botulinum C strain IZSVe-TV_6433_6_13 NODE_36_length_19118_cov_25.5003_ID_108279, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 42 29 100.0 36 ............................. GCAGTAGAGAAACTATTTGGCGCCATTCTTATTCTT 107 29 100.0 42 ............................. TATGTCTAAAGATTGAAGTTGTTCATTTATAGCATTTTCCTG 178 29 100.0 35 ............................. GTAACCAGCAGGTGCATCACCTAACCAACCATTTA 242 29 100.0 36 ............................. CTTGATACATGGTAGCTAAGTTATTCCAATAGTCTG 307 29 96.6 37 ............................C AGTTACAAAATATGCAATTTTCATCGGTACTATTTCT 373 29 89.7 0 .........G......G...........T | ========== ====== ====== ====== ============================= ========================================== ================== 6 29 97.7 37 GTATTAATTAAACTATATTAGTTATAAAG # Left flank : AAGTTAAAATTGAAAAGCCCAGAAGATCTTGAAAACAAAATG # Right flank : TGAGTCATTAAAATCTATCTTTTATGATAATGGAAATTAAATTAAAGAATTTCAAAAATAACCGTTGACATAAATGGAAAACAGTAGTAGAATAATAAATGTGGAAAGAAAATATAAAGTTAGTATGGGTTGGAACATTTTGTTCAAGCCCTTTACATAAAAATATTAACAAAATTAAATTAAGTAAGAGGAGGAATTATATGACGAATAGTTTAATGATTTTTGAAGGTTCAGAGTTAGAAATTTTAACAAAAGAGGATGTAAATTTTGAGTTTGAAGGCACAGTTTTATTCAATGGGAAACAAGTATGTGAGATATTAGAGTATAATATAAACAACTACGCTAGAGAAATTACTAAGTATTGTGATGAAGAAAATGTTCAAGTAATTATAAAAGAAAGACTCAGTTCCAAAATGGAAGAGAGTTTAAAACTCAATCCGAATATCATAACACTGGGGCAAAGAGGAACAAAGTTTATAAATGAAGATGGTGTTTTTGAT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTAAACTATATTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 102543-102181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYR010000001.1 Clostridium botulinum C strain IZSVe-TV_6433_6_13 NODE_1_length_179626_cov_37.549_ID_108209, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 102542 29 100.0 38 ............................. TTTAGTAAATCTTTTAATAAAACTTGTCCTGAAGGTAA 102475 29 100.0 37 ............................. GCAATTTTTATAATTAATTGTTGTGTAGCTGGACTTA 102409 29 96.6 39 ................G............ TTGCATTTGAATTGCATTTAAATTATCTTGAGATTTTGT 102341 29 96.6 36 .........G................... ACCCAATATTCATATAGTAGGTTAAGGTCTTAAATT 102276 29 96.6 38 ................G............ AAAGTATAATAATATAAACTAGCACACGTAAATTGGTA 102209 29 89.7 0 .........G.............TA.... | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 96.6 38 GTATTAATTAAACTATATTAGTTATAAAG # Left flank : TGGCTGGGATATTGAAGATTATTTAGAAGTTGGTAAGTGGGAATTAGTTTAGAATCTTAAAATATTAAGAATGTGCTTGATTAGGGGGATTAAGAATGGAAAAATATAAATATGTTATAAAAGTTGGATACAATAAGTATTTGCAGTTTATAGATGACATAGAAGATTATTGGCTAGTTAATAATAAGAAATTGGCTAAGGTATTAAGTGAAGAATGGTATGAGAAAAGAGTTGAGATATTAGATAAATTAATAGATTTAGGATTAACTATACCTCATTTTGAGAGTGCTTAAAGGTAAAAACAAATAGAGATTTGCAGTGAACCTCCAGTAGTGTTTTTGGGTTAATTTTACAAAAGTGATTGTAAGGTAGTTATATCAATACGCTTAGCTATTTATTATAAAAAACGGCTCACTGCAAAAACACACTATTTATTTGAAGTTTTAATGGTCAAAATATGGGATTATATAGTATAATAGAGATATGCAAAGAAAAATAGA # Right flank : AGGATTAACTTTAAAAAGTTAGTCCTCTTTTTGAATAAAAAATCACAAATATTAATAACTCTGTGGTAATTAGTGAAGAATTATTATATAATAGCATTAAAAGGTAAATTTTATTTATAACTGATTGGAGATGAAAATATGGAGATATTACTCGCGATAATGGCATGTATAGTTGGATTGTTTATTTATATAATCGTTAAGGATGAAAAAAGAATCAATGCTGAAAAAAATGAATATGATATAAAAATAAATTGGCTTTGTGATTACATTGGAGGTATACCGTTATTTGATGAGAATAAAAATAATATAGGCAAACAAATGGATGTGCAAGTTAGGGGTAAAACTAATAGCTTATATATCAAAAGCTTATCTAACGCAAATGAAATAGATATATCTATTAATAATATAACAAATATGGAATCTAAAACTAAAGAGCAAATAATAAGTAAACAAGTAAGTCCATCATTGACTAAAATATTAACTTTTGGGGTATTTTCAAT # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTAAACTATATTAGTTATAAAG # Alternate repeat : GTATTAATTAAACTATGTTAGTTATAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 176328-177010 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYR010000001.1 Clostridium botulinum C strain IZSVe-TV_6433_6_13 NODE_1_length_179626_cov_37.549_ID_108209, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 176328 29 100.0 37 ............................. CTTGAAATTATGTGCTAAAACAATGGGTAAAATGTTT 176394 29 100.0 36 ............................. TGTCTGAGGTTTTCTACGTAATCACGTAGCTGTTCT 176459 29 100.0 36 ............................. TCTTTAACTGTTACAGTCATGTCATTGTTATCTACA 176524 29 100.0 40 ............................. TACTTAAAATTAACCATTACAACATCTCTAGTAGTTTCAC 176593 29 100.0 35 ............................. GTTAACTCTGCTATTTCTCTATTTGTAAAGTTTAG 176657 29 100.0 36 ............................. TCTTTCATCTTTTTTAGCAATCCAGTGTGTTGCTTC 176722 29 100.0 36 ............................. TTTCTATATAGACTATTATATATTTTTACTTTATCT 176787 29 96.6 37 .........G................... CTCATTCAGTTCACCTCTTGTTATAATGTTAAACTTT 176853 29 96.6 35 .........G................... TCTTCTAACATTTTAATTGCTTCCCATGTTTTATA 176917 29 100.0 36 ............................. ACAGTAAACCCCTTTGGTACTTCTGTATTTTTATCT 176982 29 82.8 0 ...C...........CG...A.......T | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 97.8 36 GTATTAATTAAACTATATTAGTTATAAAG # Left flank : CTAACTGATACTATGCCTAAGGTTGTTATATTAGGTGAATATAAGTGGGGAAATAATGTGTTCCAAGGATTAATAAATAAAGATGGAATAAATATAGATGGACTTAAAGAAGTAATAGAGGAATACGAAGATTTTAGAAATAGTAAGATTTGGATAGGGGTTAGTAGTAGAATATTAAATGAAAATTTTCAAGGATTAAAGGAAAAGCTTGAAGAGGAACTGCAAGATTATGATGATGTTGAAATAGGAAGTGTGAAGAGTGCTTTTGATGGATATTTAAAATATTTAGAAAAAACGATGTAATATTATAAATTTTGCAGTGAACCTCTAGTAATGTTTTGGGTTAATTTTACAAATAGTGTTGTAACATAGATATACCAATGGTTGTAGAGATTTACTATAAAAAATGGTTCACTGCAAAAACACACTATTTATTTGAATTTTTAATGGTCAAAGTATGGGATTATATAGTATAATAGAGATATGAAAAGAAAAATAGG # Right flank : TAGATAATAAAATAAATAATCGTATAAAAAGAAAGGAAATAAAATATGAATGACTTAAGTGATAAATTAAAGAAATATAAAGCAAAATCAGATGATACTACTATATGTAAACATAATAATGATTTGTTTGTAGCTTTAGAACAATTATTAAATATACATTATATATCTGACGAATTAAAATCTTCGCTAAGAAAATGTATAAGTTATCATGATGTTGGAAAAGTTGTTGATGATTTTCAAAATAACATAGAATGTAAACATAGAAAGATTAGACATGAAATATTATCAGCATCGGTAAAAAATTTAAATGAAAGTGAGAAATTAAGTATATTATTACATCATAAAGTTTTAGATAAATTAGCTCAATTTATTAATAATATATATTATCAAGATAGTTTAAATGAAGTAAAAAATAAATTAAATATAGAGACAGAAGATATAACAGAATATTTAAAGAAAATATGTAGAGGTAGCAGAGAAAACCATAAAAAATTACATGA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTAAACTATATTAGTTATAAAG # Alternate repeat : GTATTAATTGAACTATATTAGTTATAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 179269-179626 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYR010000001.1 Clostridium botulinum C strain IZSVe-TV_6433_6_13 NODE_1_length_179626_cov_37.549_ID_108209, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 179269 29 100.0 35 ............................. ATGATGGAAGTAACTTAGATAGTTACGCGTCATAC 179333 29 100.0 38 ............................. TAAAATTCATATAAAACGCCTCCTTTATGCTACATTTA 179400 29 100.0 35 ............................. TCAGGAAACATCAAGTATGATAAATCTAAAAGTAG 179464 29 100.0 38 ............................. GGTATCCAGCTTTTTGTGCTTGTTTTCTAAAGTCTTTT 179531 29 100.0 38 ............................. TTAAAATGGAAAAGCCCAGAAGAACTTGAAAACAAAAT 179598 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 100.0 37 GTATTAATTAAACTATATTAGTTATAAAG # Left flank : ATAAGTATAAATCACAAATACAATTTATAATTAATAGTATTAGAGTGGGATATTATAATAAAAATGCTTCTGAAGAAATGCTAAGCAATGATGATACAGTATCAGTATTGCCTACTAATTTATTAAGCGAATATGCTAAATTAAGAGAAGAAAAAAGATATATAGAAGCCAACGAATTATTTGTAAATGCTAAAAAATATATATCAAAATATAATAAAGAGTTTAAAATTTATATAACATATAGTGTATACGATTGTAGAGGATTAGTTTATGAAGAAATTGATATAAATAACCAAATAATTTAATATCTTATTTGCAGTGAACCTCCAGTAGTGTTTTTGGGTTAATTTTACAAATAGTGTTGTAACATAGATATACCAATATGTCTAGCTATTTATTATAAAAAATGGCTCACTGCAAAATTTAATGATTTTATACTAAAAATAAGATGAAAAATATGGAGTGATATAGTATAATAAAGATATGAAAAGAAAAATAGG # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTAAACTATATTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 45008-42687 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYR010000017.1 Clostridium botulinum C strain IZSVe-TV_6433_6_13 NODE_17_length_59507_cov_121.832_ID_108241, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 45007 30 100.0 35 .............................. AGGTAAAAAACACATCTTAAACCGTTGATATATAA 44942 30 100.0 35 .............................. TCCATATATCTCCTTCATTCATTTTTCCTATATCC 44877 30 100.0 34 .............................. TGTCTAGCGAAGTTTTATAATGCATGGTTTTTCC 44813 30 100.0 34 .............................. TCAAATCAAATCGATATTGTTTCTAAAGTATCAA 44749 30 100.0 34 .............................. TAAATCTTTACCCCACTGGAGCGTGCACCTATGT 44685 30 100.0 37 .............................. GAAGGAAATAAGATACAGGATTTTCCTTCACAAGGGG 44618 30 100.0 36 .............................. TTCAAACACTCCTTTAATTAGAAAAGGAGAAATAAT 44552 30 100.0 35 .............................. TTGTAAATGATGATGTATTATATTCAGAGATTACC 44487 30 100.0 35 .............................. GATATGGGAGTCGGAAAACACGCCCTTGTGATTGA 44422 30 100.0 34 .............................. TACTCTCTATTAATTCATCACTATGCTTTTTCAT 44358 30 100.0 37 .............................. TGTTGGCTATTTTGACAGAGCAGTTAAAAGTTCCGAA 44291 30 100.0 35 .............................. GTTATATATTTTATAATTTCTCTTTCTGCTTCTCC 44226 30 100.0 35 .............................. TAACGTAGATAAAGGTATGCCTGATGCACAATTTA 44161 30 100.0 36 .............................. TTCATAAAATCTTCATAAAAATGAACTAAAAACTGT 44095 30 100.0 36 .............................. TTTTCTAAGATTGATATTTGGCTGTTATTTTCCATA 44029 30 100.0 35 .............................. ATTTCTATAGATAAACTAGCTATATCTTTTTTAAG 43964 30 100.0 37 .............................. CAGAATTAAAAGGTGCGTATATTAAAGTAGGATTAAC 43897 30 100.0 35 .............................. TCTCCAAAAGTAGTGCTAGTTATTGGAACGTTCCC 43832 30 100.0 35 .............................. TTTTTGGTAGTTGTTCTTTCTTTACCTTTCCTTCT 43767 30 100.0 36 .............................. CTGTTTTTATGTCAATTCCCAATCTTTCTAGCACAA 43701 30 100.0 36 .............................. TTATAAGTAAAATTTTTATAAAAATTTAATATTTCT 43635 30 100.0 35 .............................. ATTTAAAGATGAAGATTACTATTGTCACAAATGTG 43570 30 100.0 36 .............................. TGACCACATGAAAACGTACCACTATAACCTGCCATT 43504 30 100.0 36 .............................. TAAGCATAGTAAGGGAGAAAAAGCAGGGGAATCAAT 43438 30 100.0 36 .............................. TATATTTTTATCCATCTATAGACCGTTGCTCTTCCA 43372 30 100.0 35 .............................. AGGTAATGAGGTAAGTCCTTTGTACTAACCCCCAG 43307 30 100.0 36 .............................. TTATAAGTAAAATTTTTATAAAAATTTAATATTTCT 43241 30 100.0 36 .............................. TTGTATAAATATATAGCTTTTTTCATTTTCAAGCAC 43175 30 100.0 34 .............................. TCTATAAAGTTATATTCTTTAGCTTTTTGAGCAT 43111 30 100.0 36 .............................. AAAAAAATGGACTGAACTTTGGAAAGACTGTTTAAA 43045 30 100.0 37 .............................. GCGCATATTCCTATTGTATTTGTATTATGTCCTTTGC 42978 30 100.0 35 .............................. AACTTATCCTTATCTTGTCCATAATCCATATCTAA 42913 30 100.0 37 .............................. AAAGGAGATTAATTTTTATGGATCTATTTGCATTAGA 42846 30 100.0 35 .............................. TTTTTATATTTGTTTCTAATAGCATCTGCTGCTAA 42781 30 100.0 35 .............................. AGTATTACATTAAAAGATACTACCGTTAGTTCTGC 42716 30 90.0 0 ....................C...C.T... | ========== ====== ====== ====== ============================== ===================================== ================== 36 30 99.7 35 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGATAAGATATAATGAGTAAAAAAATTAATTATAATTATGCATTTTTATTTTATGATGTGAAAGAAAAGAGAGTAAATAAAGTGTTTAAGGTTTGTAAAAAGTATTTAACTCATTATCAAAAATCTGTTTTTAGAGGTGAGATAACACCTTCTAATATAATAAAATTAAGAGAAGATTTAAAGAAAGTAATAGATGAAAGTGAAGATTTTATATGTATAATTAAATTATTAAATAATAAAGTATTTGGAGAAGAAGTGTTAGGAGTAGGTATTGAAACTGCAGAGGATTTAATTTTATAAAATTATTATCCCAACCGATTAAAAAATTCAAACTAGTCCCAATCCTTGATTTAACTGTTTTTGAGTGGTATTTTGGTTTAAAAAATTAAATTATAAAAGTTGGTTGGGAAAAAACTAACGAAAGTGTTTATTTTCAATGATCTTAAAGGTATAATATAAATAAGGAATAGCTATTTTACTATG # Right flank : AAAAATTAGTTAAATACTAATACAACAGTTTAAAATACCCCTATAAGTAAAAACTTATAGGGGTATTTTAGTTATCTGGAGTAATTAAATTTATATTGTGTTCTTCAAAAAACTTAACATACTCTTTAGGTGGAATCCTATCTGTAATAAAACAAGTAATATCTTCTAATTTACAATAAGTTTTAAGAGAAGCTGTATCTAACTTTGAGTGATCAGCTAAAAGTATTACATTGGAACTATTTTCAACTACTGTTTTTTTTACTTCATATTCAAAATTAGATGAATTTGTAACTCCTCTATCAATAGAAAAACCTGTAGTGGCCATAAATGCTTTGGATATATTATAATTCTTTAAAAAATTCGAAGCTTCTACACCAATTAAAGAATTAGTTTCTCTAAAAAGAGTTCCTCCTGTGGATAATATATCTACATTTGAATAAGGCAAAGCCTTTAGTAATATATTAAGATTGTTAGTTATTATAGTTAAATTTTTTCTATCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //