Array 1 1770306-1771983 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVY01000008.1 Salmonella enterica subsp. enterica serovar Derby strain 201507632 201507632_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1770306 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1770367 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1770428 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1770489 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1770550 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1770611 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1770672 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1770733 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1770794 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1770855 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1770916 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1770977 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1771038 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1771100 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1771161 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1771222 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1771283 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1771344 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1771406 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1771467 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1771528 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1771590 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1771651 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1771712 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1771773 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1771834 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1771895 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1771956 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1788242-1790223 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVY01000008.1 Salmonella enterica subsp. enterica serovar Derby strain 201507632 201507632_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1788242 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1788303 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1788364 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1788425 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1788486 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1788547 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1788608 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1788669 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1788730 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1788791 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1788852 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1788913 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1788974 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1789035 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1789096 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1789157 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1789218 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1789279 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1789340 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1789401 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1789462 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1789523 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1789584 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1789645 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1789706 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1789767 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1789828 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1789889 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1789950 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1790011 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1790072 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1790133 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1790194 29 96.6 0 A............................ | A [1790220] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //