Array 1 193646-196116 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899483.1 Thioalkalivibrio sp. ARh4 F465DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 193646 29 100.0 32 ............................. TACTCTGGCACCGTGACAACCCGAGCAATCCG 193707 29 100.0 32 ............................. ACGCGGACGACGAAAACCGCGTGCACTACCTG 193768 29 96.6 33 ............................T GGTGGAATACGGCACCGATGTGCTGGCCGGAGC 193830 29 100.0 32 ............................. GACGAGCCGAATATCCGGCGCGTCGGCGGGTT 193891 29 100.0 32 ............................. GCACGGGACTACTCAGAGGTTGCGGACCAGAT 193952 29 100.0 32 ............................. TAGTCGTCTCGTCGAAGCGCGGATGCTCTGGC 194013 29 100.0 32 ............................. TACCTAGAGGTACAGAGAGAGTTGAGGTATTG 194074 29 100.0 32 ............................. TCCGTGATGCGATCCAGCGGAAGCCCGTCGAC 194135 29 100.0 32 ............................. GCGTCGTTTCCGGCCCCTCGATCACCGAGAGC 194196 29 100.0 32 ............................. AACGACCGCACCGCGCGCGTCGCTGTGCTCGA 194257 29 100.0 32 ............................. GCGTTCGAGCTGGCAGTCTCGCTGGTGCAGGT 194318 29 100.0 32 ............................. CCACAATATGCGCTCTAGGTTGGCTTTATGGT 194379 29 96.6 33 ............................T GTTTGGAAGAGAATTGCCCCGGCTCCACTTCTT 194441 29 100.0 32 ............................. CTACAGCAGGTAGCGCGTTTACATCGTCAATC 194502 29 100.0 32 ............................. GGAACGGTCGATCTAACGATCCCGGCGCATGT 194563 29 100.0 32 ............................. GTCTGGCACATCGTCCCAAGATTCCAGAATAG 194624 29 100.0 32 ............................. GGTGGATGAAAACTTAGGAGGCTGGGCACCAT 194685 29 100.0 32 ............................. GATTCGTGCGGGCGGTCCATGACCAGAGCAAC 194746 29 100.0 32 ............................. CGGTGCAGGGCGCCCGCGATGCCGAGGAAGCG 194807 29 100.0 32 ............................. GGCGGACGGGGGTTCCGAATGAGCAGCATCCA 194868 29 100.0 32 ............................. GTTATAAGGATGATGCTGAGGCTGCAAGAGAC 194929 29 100.0 32 ............................. GTGTGAGCAACAGCTACACGGTCTACGTCCTG 194990 29 100.0 32 ............................. GTAAAGGATGAACGTTTTGAGGTTGAGGCATC 195051 29 100.0 32 ............................. AACGTTCCCGCGTCTGAGCCTGTCAGGCTGTC 195112 29 100.0 32 ............................. GGAAGGCAGCGAGACAAGCCTAGAGATTGAAA 195173 29 100.0 32 ............................. GTTTAGGTCATTGTCCTGTAGTTCGTGTTCCT 195234 29 100.0 32 ............................. CACTTAGGCGACACGTTCGCCGGGTGCTGTCC 195295 29 100.0 32 ............................. ACCTGTCCGGTGGCGAAGACAAGGCCGAAGCG 195356 29 100.0 32 ............................. TGGGAGAGGAAGCTGGACGGGTTCCCGCCCGG 195417 29 100.0 32 ............................. CTCGAGGGCGTTGGAACGGGCACGGTCGATTA 195478 29 100.0 32 ............................. TGCGGCGATCGGCAGAAGCCCGATGGGAAGGC 195539 29 100.0 32 ............................. TCGGCGTGGTTTCGATCGATGACTGGTCCCAG 195600 29 100.0 32 ............................. AAGCCGCCCGGCCCGTCCTCGCCTTCATAGAA 195661 29 100.0 32 ............................. TTCGCGCGGATGGTTTCGTTACGCGCCTTGGT 195722 29 100.0 32 ............................. GTTGAGAAGCACGCCGACTTTCGGGTGATCGC 195783 29 100.0 32 ............................. ACGGCCTCGAAATGCTGACGGGAGTGTAATCG 195844 29 100.0 32 ............................. TACCAGACCACGGTCCCGTCCGTCAGCGAGTA 195905 29 96.6 32 ........A.................... CCCACTTCTGTGGCGGCTTCGTGGATGATGCC 195966 29 100.0 32 ............................. GCTTGGGCCTTCGCCGGCATCCCCGACGCGGC 196027 29 96.6 32 .................A........... GAGACTACGATGCTTTTCTATCTGCTGCTGTT 196088 29 96.6 0 A............................ | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.6 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CCGCCTCCGCCAGCACCGGAAGCGCAACCACCCGCGATCCCGGAGGCCGAACACCTGGGCGACGCCGGCCACAGGAGCAGATGACCATGACGATGCTGGTCGTCGTAACCGAGAACGTACCACCCAGACTGCGCGGCCGCCTCGCTATCTGGCTCCTGGAAATCCGCGCCGGAGTCTACGTCGGCGACGTAAACCGCCGCGTACGCGAAATGATCTGGGAACAGATCAACGCCTTGGTCGACGAAGGGAATGTGGTCATGGCATGGGCCAGCCGCCACGAATCCGGCTTCGAATTCCAGACATGCGGAAAAAACCGCCGTATACCAGTCGATTACGAAGGACTACGGTTGGTGCGCTTTGCACCCGAACCTGACCATGAAACATAACCCGCGGAAAATGCGGCACTCTTTAACAACTAGCAACCACTTGATTCCGCCGGCTGAGCTGGTGGATCATTCAGCCGCCAAAACCTTCCCGTAGATCAACAAAATACAGGAAGA # Right flank : GCGCTCGTAGATGTGGGGCGACATGAAGGGACATCACTTCGTCAGCAACACTTATTTCAGTGAAAGCCATTTTCGTTTAGTACTTTAGAGTTAATACGAAACGACATCCGTCCCTCGTGTACCCAGTTCTGTACCACCGCGGCGCGGTGTGCACCCGCTTCATTCTGGGTATCGGCTCCAACTCCCGGGTCGATTGATGCATGATCGGTGCGACGACACGTCGCCGGCGAAGGAGCATTACGCATTGCCCTCGTCGGGGAAGTCCTGGTCGCGCTACTCCCGAGCTCCAGAAAGCGGAAGCCCGGCGCGGGACTGGGCTTGCGCGGTTTCATCGGTTCCTGGTCTCGGCGGTCCTGCGTCGCCATCTCGCGCCGCAAGGGTTCTAGCTCGGAGGGCATCAGCCGACGGGACGCGGACCCGGGCGAGGAATCGGGCTCCCGACTCCTTGAGCCGGTTGATCGGGTGCCTCCCCACCACTCTGAGGGTTCTTGGCCATCGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1037866-1040054 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899481.1 Thioalkalivibrio sp. ARh4 F465DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1037866 28 100.0 32 ............................ TCGTAGCACTGCACCTGCCGTGCGCGCTCCTG 1037926 28 100.0 32 ............................ GCCTTTTCACCGCACACCAGGATCGTCGTCTT 1037986 28 100.0 32 ............................ ACGGCATATCCACTTGGGTGTCCGCGTCCAAA 1038046 28 100.0 32 ............................ CAACGGTCCAGGCGGGCGCGGCGTTCCTCGCG 1038106 28 100.0 32 ............................ AGGTTGCGGCCCTTCTGCTGCACGAACTGGTC 1038166 28 100.0 32 ............................ GAAGTGCTGCGCCCCAACCGGCACCTGCTCAA 1038226 28 96.4 32 A........................... GGTGGTTTTGGTCATGCCGTGCGCTCCGTCCG 1038286 28 100.0 32 ............................ AATCGTGAGAGCCGCGAGGCCGTGGATGTGGC 1038346 28 100.0 32 ............................ GACGATCTCCTGCGCCGCTTTGTTCGCGGCGA 1038406 28 100.0 32 ............................ GAGTCGAACCTGAGCACCCTCTTCTTCAGCGA 1038466 28 100.0 32 ............................ TCCATGGCGCACCCAGCCAATCACCTCCAGTG 1038526 28 100.0 32 ............................ GACTACCTGTGCGTCAACAAGCGCGCGTTCCT 1038586 28 100.0 32 ............................ TGTCAGTATCCTGCTCGGGGCTGACTCCGCCG 1038646 28 100.0 32 ............................ ATTGACGAGCTGTGCGAGCGGATCAATACCTC 1038706 28 100.0 32 ............................ CGCGACATACAAATAATTCGCCGGGTTTTGTC 1038766 28 100.0 32 ............................ TCATAGTCCTGCTGCCATCCACCTGTCCCCCA 1038826 28 100.0 32 ............................ ACCAAAGTTCGGAAGGACCTGCATCGATTGGT 1038886 28 100.0 32 ............................ GAAGGAGACTCGGAGCCGCGGGTCGTTCTGGA 1038946 28 100.0 32 ............................ ACGTTTCGGTCGTGTCGGCTGGGATCGGTGAC 1039006 28 100.0 32 ............................ CCGGCACCGCTTGCCGTCCGCCAATTCTATGC 1039066 28 100.0 32 ............................ TCCAGGATCTCGCTCACGTCCGCGTGGAACCA 1039126 28 100.0 32 ............................ GCAGAAGCTCGAGGTCAAAAGGCGCTCGGACG 1039186 28 100.0 32 ............................ CGCCCCCGACACTCATAAACACCCCGGCGACT 1039246 28 100.0 32 ............................ CTGGCGGCGAAACTCACCCCACCCCTGGTCGA 1039306 28 100.0 32 ............................ CCGGAGTGGCGACGTACTCCGCGCGCTTCTGA 1039366 28 100.0 32 ............................ GAAGTGCGCATCCGCGAGATCGACCTGGTGCT 1039426 28 100.0 32 ............................ GGATGTCGACTCAGTGCGCCCTCGCTCTGCAA 1039486 28 100.0 32 ............................ TACCCTCGACCGCACCCTGGCCTCCCTTGAGA 1039546 28 100.0 33 ............................ GCTGCCCATGTCGTCTTTAGGGGCGGCCTCGAG 1039607 28 100.0 32 ............................ CGAATGTGTTAACGCAGGCAGACTATATCGCA 1039667 28 100.0 32 ............................ CCTTCTTCCGCGGCGTCCTATCCTCCGATCTC 1039727 28 100.0 32 ............................ GGCAGCTTATATCGCTGTCGCACAAGCCGCGA 1039787 28 100.0 32 ............................ CTGCGGAGTCTTGTTCGGCTGAGACTTCTGCA 1039847 28 100.0 32 ............................ TGCTGCTGCTTTTCGCTCTGCGCGGATGCGCT 1039907 28 100.0 32 ............................ CCGTTCGACGTCGACCGCGCCGGTGCCGCGCT 1039967 28 100.0 32 ............................ TTCCGTTTCTTATATCAGAGATAGCAGACATG 1040027 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.9 32 CTTCTAAGCCGCCCACGGGGCGGGAAAC # Left flank : GCGTCGACAGTCCTTTCCCATTCCGGTGCCCCCGTGCGGGAACTCGCCAAGCAGCTGGGCGTTTCGCCCGCCACGCTCTATCGCCACTTTCCCGGCGGTCGGGCCGCGCTCCGTGACAATGGCGATGAATGAGGTCCGTCTGCGCAAGGTCGCCCCTGACCGCAACCAATTCCGGTTTTACCGGATGTTCATTCAGCGAGGCCTTTTCGGTGGGTATGCCGTCTGTCGCGAATGGGGTCGTATCGGACACCCAGGAACCACTCGCGAAGACTGGTGCAGCACCATCGAGGAGGCAAAGGCGAGCCTGGGGCAAAGGACCGCGGCCAAAGTCCGGCGCGGCTACACCGGTTGGTCGCAGGATGCTTAGGGCAAAAGGGAAAGGCCCGGGAAGGGAATGGTAGAGAGAATGGCAAGGGGCTTACCCTGAAAGGGCCGGACAAGCCCGGAAACTTCTACGGGGCGGGAAACTGTGCCCACGGCCGCGCAGCGGCTGTGCACAC # Right flank : CCGTAGCAAATCAGCTCTAAAACGTGGATTTCAATAGAAAAAACAGAACAGAAAGAGATATAACCATACGAAAAGAAATGCTATGTAAGTAGTTGTTTTGTTGGTTGATAAAAAACGGTAAGGAAAACATGGTTGTTTCGCTAGAGGCAGAACGATTTCATCGTGTCGATCATCCTGGACAACGCCCTGGTTTCATGTGCCGAATCGATCACACTCCTCCTAAATTCACGGTTCAGGTGGCGGTCGCCCCCTTTCTTGACGGCCATCTCGAAAGCCACGGGCAAAACCAGAGAATCCTTTACGAGATCCGCAACATCGAAAACCAGGCCCCCTCGGCGCGTCTTGCCGTGAAGAACGGGCATCGCGTAAGGAATGCCGAGCGCGTGGAGCGCAGTGGCCGCATAGCCGTAAGCAAGGTAATTGCCATGGTCGATGAGCCCGTTTGCGACATCGGCGGCCGAACCCGTGGCCTGCTTGCCCTCATCACGGTGAAAGTCGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAAGCCGCCCACGGGGCGGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA //