Array 1 3536435-3535862 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985747.1 Paenibacillus sp. Marseille-P3787, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 3536434 31 96.8 37 ..............................A CTGAACCCCGACTGATAAAGTAGTTGGCCATATCGTG 3536366 31 93.5 37 ....C.........................A CTGAACCCCGACTGATAAAGTAGTTGGCCATATCGTG 3536298 31 93.5 35 ....C.........................A GTTCAAAGGCTAGTAAAATCGCAGCAGCAATATCG G [3536273] 3536231 31 100.0 38 ............................... CTGATTCTCCGATGACTCGGATGTTTCCGACACCGGAG 3536162 31 100.0 36 ............................... TCACATGAATACGACAATATCCAGTCCCAGCAATAG 3536095 31 100.0 39 ............................... GCATTTCTACCATACACATCCGCGAGTCCGTAAAATGGG 3536025 31 100.0 35 ............................... CGACAATATTAAAGGCGGTACGACTATTTTCGGAG 3535959 31 100.0 36 ............................... TATGCTAGAATAAGGTACGAGAACAGTTTTTAAAAG 3535892 31 77.4 0 CT.........A.......TCC.T....... | ========== ====== ====== ====== =============================== ======================================= ================== 9 31 95.7 37 TCGCACCCTATGCGGGTGCGTGGATTGAAAT # Left flank : TTTTCATCTGCAATCTCTCCTCGTGGTCGGATATTTTTCTTACCCGATTTATTTTACAGGAGGTTTATGAGAATTCTCTGAGAAAACAAAAAAAGTTTTATTTAAGCGACAAATGCTTACTTTTGGAAAAATGGGGTACCATTATGCAATAACTGTTGTTGAATTCCTTCAAGCTATAGATCATACTTGGGGTATATAGCCCAATTCTCTATTGATACGGGATTTGTGCAAGAGACGTTTCAGCAGGGAGTCAAACAAAACTTATTCGGAAATTTTTTAAAATGTACCTTTTTGGTAGATAAAACGTGTATAAGAGCTGATGATTTTGAAGTGCGAATGTGAAGCGAACATGATTTTCCTGGGGGGTTCGCACCACTAAAATACCTTAATAAGTATATTTTTACAGATGAAGTAATTGTTTTTCGGGCTTTTTAGTCTGTTTTTGGGTGGGAATGATCTAAAATTCTGGTTTTTTGGGATGTTTTCCTCAAAAAACGGAG # Right flank : CGCTACTTGAATCCCTAAAGGGATGATTTCTCTATTAGCCAATGCAGAAGGTTGATACTTTCACAGAATATTGGAGAAATGGTTACCAGATTTAGGGCTGTGTCATAAGTCGATTTATAATTTTCTAGCTCCTTTTAGAGTTGAATAAAAAAGGACCTTAATCTCTATGGTGGGATTGGAGGTCCTTTTTGCTTCATTTTTGGGACGCTCCCGTTTTATGCGAACACTTGGGAGACAGCGCAAATTGGTTTGGTTACAGTGAGAAAGGTTGTCACCTAGGCCAGACGATGATTTAGCCTGACATTTGTGCAAATAGAAGTAGAGACACGGAATCCCGCGCCTTCAAGACTTCGTTGCAAAAAATTCTATAAAATCCCATAAAATTCAACAGTTTTCATTTATTCTAAGCCAGTAATCACAAGTTGATATAGAAGAATGGTGATACAGTACTGCCCTGTATCGCCATTTTTATTGAAAAGCCAGTGTATTCCCGGCAAGAT # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCTATGCGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCCCCCTATGCGGGTGCGTGGATTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3539424-3539261 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985747.1 Paenibacillus sp. Marseille-P3787, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 3539423 32 100.0 33 ................................ TTTCCGGAATTATACTGCTAGCTGTTTTACAGC 3539358 32 100.0 34 ................................ CCAATCTGGCTCATTAGGTTTTGGGTCTGGTTTA 3539292 32 93.8 0 ..........................G...G. | ========== ====== ====== ====== ================================ ================================== ================== 3 32 97.9 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ATAATCAATATAGGGATAAGCCAAGAACCTTCACCGATACTTAATATAGTAAAGACAGCAATAGGATATAACATAGTAATTATAACTTGAATTTGGATAGTTTTATTTGTTTGAATCTTCAATCACACTCCCATAAAGTGTTCATAAGATCGCATCGTACCAAGTATATCGAAAAATTTTTTTATATGCACTGTAGTTTAGTATCAACACACCAGTATCTGAATGTAATTTTCTGTATATATTATATATCAATTTTTTTATTGTCTCAAAATATTTTGGATAGAGATGTATGGTATGATTTATTCAGTTAGTGCCTTTTATTAAAAATTAGTGCTAATGTGAAGCGAACATGAATTTCCCGGGGATTCGCACCATAATTTCCATTAATAATTGGGTTTTATGTTAATTATTACAAAGTTGTTTATCTCCTAATGAGCTATTAATCTAACGTTTTTAAGGGAAAATACAATTTTTGACCTGTTTAGGTTTGAAAAATCGGA # Right flank : AACAGTGGGTACTGGATCATAAATGTTGAACCCTGGCACTTGAATTTATGATAATTGCAGGGTGCGGTTTTTTACTAGTCCTTGAGCCCTTAATGAGGGCTATACACCTCAAAAAAACCGAAAAACTTTTTTTGAAAAACCCCCTCACCATTCATCTGAATTTGTTTTTTTGAACAAAAAATCCTCATCCTTGCTGAGGAATGAGGATTGCATTTTATCGTTTTCCGACAGAAGACTCCCACTTTAAGGAATGTGTAGGGCGTAGCCCAATGAGTAAGTGAGAGATGAATGTCAGTTAGGCGTAAGGCTAAAAGTTGTCTCTTTTTTACGCTATGATATAATCAGTCTTATACAAAAGAAAGGCTGATTATATCCATGAAATTAGATAGTAATAACCATTCAGTGTTCTTGATGTACTACCACCTTGTATTCGTTGTTAAATACCGTAGAAAAGTCTTTGACGACGAAATGTCTGACTATGCAAAAGATATGTTTATAAA # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3543416-3543117 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985747.1 Paenibacillus sp. Marseille-P3787, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3543415 32 100.0 33 ................................ ACCAGGCTTATTGTTAGTCACCGATACATCCAC 3543350 32 100.0 34 ................................ GCAATCATGTGATCGGCTTTTTTGAGATTTTCAA 3543284 32 100.0 35 ................................ AAATATTCCCATAATTAAGTGAAGGATGCTTTGTA 3543217 32 100.0 37 ................................ CTTGCTTAGTTTTCTCTCAACACTCATGCAAGCTCTC 3543148 32 90.6 0 ..T.........GC.................. | ========== ====== ====== ====== ================================ ===================================== ================== 5 32 98.1 35 GTCGCACCCTATATGGGTGCGTGGATTGAAAT # Left flank : GAAGAAGAAGACCAAGAGAAATTGATTAGAGAGTATATGCAAGTATTAATAGATAAGCAGCTAAAAATCCCAGTTGTTATATATGTAAAGTCAGGGAGACTGAACGGAAAAGACGAAGAAAAGGTTAATGAATACCCTTTTACTGTTATAGCAAATATGCCCACAACACTAACGGGCAATATGATATCGCTCGCGACTGTATTAGCCTATGAGAAGAAAGCTGGGAAGTAGCGAATATATCAGTGATAGATGTGAGGGCAGTCGTGCTCAATCAGACCTCGTGGAAAGAGATTAGGCAAGGCGACTGCCCTCTCGCTAATAGCTGGAGGATAAGTGCGAATGTGAAGCGAACATGATTTCCCCGGGAGGTTCGCACCTCTAAAAAGCCTAAATAAGTCTATTTTTACAAAAAAAGCAATTGTTTTTCGGTTTTTTTACATATACCGAGTAAATATAAACTAAAAAGTGAATTTTTGAGATGGTTTTGCTCAAAAATCGGA # Right flank : AGGTGAAACAGTAAAAATAGTATAATTGACTAGTAGCACAGTACATGAATAAATCATCCTCATCAAAACTCTGTTTGCTGCAGCAAAGTATGTCTAAAGTATGGCGATGATTTAATCCGATGGGGCGATGTGGCCTTTCACGCTGTCTTATATACTATAGTTATATCTGAAACGACTTACAGTTTATGGATTAGATATAGCGATATAGGATAGGGCGAGGGAGGCAAAGAACAGCTTGGAAATTCGCGTAACAACGGAAGAACTTGAAGGTTTGCATCGTCGATTCCGAAATACCGAAAATGTATTGCATTAAGTTGCTTACTCCCTGGAGCAAGCTTGGCGTAGTGTGGATTATGAAGGTTCACAGAGGTCCGAACTGGATGCAACTTGGGCCGAAATTGCTTCAATATTCAAGCAACTGATACAAGAGTATGAGCAAATGGCCGTATTTCTCGGCAAGAAAGCTAATGCCTTTGAAGAAGCAGATTATGCGTGGATGC # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3552793-3552158 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985747.1 Paenibacillus sp. Marseille-P3787, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3552792 31 100.0 34 ............................... ATCATGGTGCTTTTTAACGCGAAGTAGGTCTATG 3552727 31 100.0 37 ............................... CATCGAAGACCAACGTGTAAACGCCGCCTACCTTAAG 3552659 31 100.0 36 ............................... TCCTACCAGTCCTAAGTGGGGACGGGTGATGAAACG 3552592 31 100.0 37 ............................... AAGTCGATTAATATGTCGCTGGCCGCCGTATCGCCCG 3552524 31 100.0 37 ............................... AAGTCGATTAATATGTCGCTGGCCGCCGTATCGCCCG 3552456 31 100.0 36 ............................... CAAATACTTAATAGCCAGCTGCAAAAACTCCAACGG 3552389 31 100.0 35 ............................... TCCGTGCAATGGAATGCTTTCAGCAGCTCAATATG 3552323 31 100.0 36 ............................... ATTGTGGACGATTATCGATATTGTTTAGGACATTGG 3552256 31 96.8 37 ...................A........... AAGAATGGACACAGCGACACCCCCCTTCAGGGTAGCG 3552188 31 96.8 0 .....................A......... | ========== ====== ====== ====== =============================== ===================================== ================== 10 31 99.4 36 TCGCACCCTATGCGGGTGCGTGGATTGAAAG # Left flank : ATATTCTCACAAAAATACCCTCGATCCCGATTATGCAATGGTCGAAAATAAGACTAAAGAGATTGAGCAGTGCGGATTGTTTGATGTGGTGGACAAGGTAAGCTTGTTAAATCATAATTCCGGTTTGAAATGGTATATTCATCTTCTGAAGAAAAAGAGTTAGCAGTTCTTTGGATTATATATCCCTTAAAAAGCTTATTCTAGCTTGCAGAGCAGGTGAGAATGGGCTTTTTGGGTTGATGTGTTTGATGAAGGGGTTATTCTTTATGCTGGAATTTTAAACTGAAAAAATGAATGTGTGGTATGATTTATTTAGTTGCTAATCTCTCATTATAAATTAGTGCGAATGTGAAGCGAACATGAATTTCCCGGGAGATTCGCACCACGAAAACAAATAACATTTGCAAATCACACCATTTATAGGAAGTTTATTCGTGCTGATAACTAGTGTTTCTCAGGAAAATACGATTTTTGACCTGTTTTGATTTGAAAAATCGGAG # Right flank : TTTGAATCAGAATGATAATAAAGGTCTACTGGAAGTGGCACCAGATGTGCTCTGTATTGAAATTTCAAAAAAAAGCTGATCGACAGCGTTAATGGTAGTTACACTCTAACTGGAGCATGTGTTTAAACATTTTGACTTTCATAAATCAGATGGGGGAGTGGGTTGGTCTCTGAGCAGGAAGAGGATTAGTAGTGGTCCTAACGAAAGAATCTTTATAAAGCACTTTTATATAGTTAATCATCTTGTAGGGCCTTGTTGAGGCCTTTTTTTATTATCGGATTGCCTAGAAAAGTGCGAATTATCTATATGGTGATAGTTGAAGAAGGATTCACAACCGTTATAGCTCGGCATGGATACCAGTTTTTTTAAAAACTCTAGAAAGCGTATTGGTGAAAGTACTCGCCAGAGGCAATCGAGTAACATACCAGTTCGTAATGTTTATACAATTTTCTACAATAGTTTTGAATAAAAAGAGGAAATTTTCGTATTTATATCGAATT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCTATGCGGGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 3555480-3555246 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985747.1 Paenibacillus sp. Marseille-P3787, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 3555479 31 100.0 38 ............................... CGCCGGGTGCTTTGTCTAAGCCGGGAGAGTTAACCTTG 3555410 31 100.0 36 ............................... CGCCTAAATCGTCAGCATCTGACCATTGATACTTCG 3555343 31 96.8 36 ............C.................. ACATCAGGATCATCTCGGAGATTAACTCCGTAATCG 3555276 31 77.4 0 ...T.......A..T....T....AAA.... | ========== ====== ====== ====== =============================== ====================================== ================== 4 31 93.6 37 TCGCACCCTATGTGGGTGCGTGGATTGAAAT # Left flank : CATACAGGTGAGTTAATTGGATTTGCTATGTATGGATTCTCGGAAGAAAGCAACTCCTATGAACTGTGCAGATTTATGATTGATATAAAATTCCAGGGAAATGGCTATGGTAAGCAGGCTTTATCGTTGATTATCGAAGAAATGAAAAATCAATTTGGCTGCAAGGAGATTTATTTATCTATCGTAGCTGAGAATACAAAAGGTAAACATGTGTATGAATCTTTCGGGTTTATAAATACCGGGGAAATACGGGATGACGAAGAATTGTATGTGTTGAAATTATAAATTGATTCGGTCGCATTTAATGGGCCTGGAACAAGGTTTTATAGTTATTTGTTCCCCAAGCGAACATGAAAGCCCGGGGGATTCGCACCAGAAAAATAACATATATTTGGTTTTACAACAAAATATACTTGGTTTATTTTGGGTTTTGTTTTAATAGACGGGAAACATTTGAATGTAAAATCGATTTTTCGTGATTTTTTGACTGAAAATCGGAG # Right flank : AAATATAACTGATACCCGTGTACTCATTTGATTTTAAAAGCAGACAACTGAAACTTTTGAGGATTGGCATTTATATAGAAGTGGTTATTTGCTAGATAAAACTTAGCTGATATGATCTTAGTACATAATATAAGTTGATTATTTTTCCACTACTGTTTCATACAAAATAAAGTTATTACACAAGGGGGGATTATATTTGATAGAGGTTGCGGCGGCGATTATCGAAAATGATCAGGGACAGATTTTGATTGCGAGAAAACGGCCCGGGAAGTCGCAGGCTGGGTTGTGGGAGTTTCCGGGCGGTAAGCTGGAAGCGGGGGAATCTCCTGAAGCGTGTTTAAAGCGTGAGCTTCAAGAGGAAATGAAGATTGAAATCGAGCCCTACGCCTGTTTTGAAAGCCATGATCATCATTACGGTGAAGTTCATATCCGGCTGATTGCATACAAAGCTTATTATATTAAAGGAACCATCCAGCTTGTTGATCATGATGAGTTTCGGT # Questionable array : NO Score: 8.54 # Score Detail : 1:0, 2:3, 3:3, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCTATGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 3564925-3563070 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985747.1 Paenibacillus sp. Marseille-P3787, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 3564924 31 100.0 37 ............................... TAAACTATCTTGAATATTATTAAGACTAATGCTGTCG 3564856 31 100.0 35 ............................... TTCGAGTATATGATGGACCGGAAACCCTTTTCTAG 3564790 31 100.0 37 ............................... TGCTTATTGATGGGGTTCCAGTGATCATTACTTTAAG 3564722 31 100.0 36 ............................... AGATTACCAAATAAAGACAATAATAACCAATATTTG 3564655 31 100.0 37 ............................... AATCTCTCCTTTGTTATTTCTTTATGTCGTCCCTTGG 3564587 31 100.0 34 ............................... AACATCCAACTTTGATCATTATCAGAAGATCGTG 3564522 31 100.0 35 ............................... CTGTAATGGTATTGAGAAATAAAACGAATGCGGAG 3564456 31 100.0 36 ............................... ACGCCACCTGTACCCACTTCCTCACCTCCTTTCAAG 3564389 31 100.0 40 ............................... CGCCGGGCTATAACTGGATCGACCCAGGTAAGGAAGCCAG 3564318 31 100.0 37 ............................... CTGTTCTGGAGTCCCTTGGTTTTCCTCGTTTGTGTAG 3564250 31 100.0 37 ............................... CACCGCCTGCCTACCGAACTCCCACGCCTCGTCCTCG 3564182 31 96.8 35 ..A............................ GCTTTGGTGAGCTCCAAGGCAACGGGATTGGAAAG 3564116 31 100.0 34 ............................... CATTAAAAAAATTTATTGATATGTATGAAGATGG 3564051 31 100.0 38 ............................... ATACTTTTCAAGATGATATCCTAATTTATTTAGATCAG 3563982 31 100.0 35 ............................... AACTAATATGACTCCTCCCTCTTGGGCCACTTCAG 3563916 31 100.0 37 ............................... CGCCTAATCCCGTTTTAAGACCTGATGTTGTACAAAG 3563848 31 100.0 37 ............................... TATTCAGACGACAGGTTAGAAAGAACCACCGTATACG 3563780 31 100.0 40 ............................... CTTTCGCTGTGCCGCCGCTTTGACTGCGGTACGAGCCGCG 3563709 31 100.0 35 ............................... TGCTGTATAGGTTTGCAATGGCTTGCCTGTGATGG 3563643 31 100.0 40 ............................... ATTTCCTTGGCGTTTTTAAATAACATTTTAGCAGTTGCAG 3563572 31 100.0 34 ............................... CAAGTATAATATCGCCCTTCTGGTAACTCCAATG 3563507 31 100.0 38 ............................... CCCTGATGGTGCATCCGTGTACGAAAAACTGTATAAGG 3563438 31 100.0 37 ............................... CATGCCAATCTCGCCCCCTTTAGCGTCTGATTGCGCG 3563370 31 100.0 37 ............................... CAAAAATATAAGTTTATGGTGTCATTCGAATGACTCG 3563302 31 100.0 36 ............................... GATGATTGCAGTCATCGTCGGGTCCGAGTGAACTGG 3563235 31 100.0 37 ............................... GCATCATCAACAACAGAATCAATTACCCGAGGATTCG 3563167 31 93.5 36 ............C..C............... GGCATCCCTCGAATGGTAACGCGAACCGGAACATGG 3563100 31 67.7 0 ...........ACA..CC....TC.C.C..G | ========== ====== ====== ====== =============================== ======================================== ================== 28 31 98.5 37 TCGCACCCTATGTGGGTGCGTGGATTGAAAT # Left flank : ACCCGTACCATTATTGTTTCCTGCGGTAAAAGGGACCACGTTTAATATATTAATTGGTGTTGAAAAGGATTTTTCGAAAGAGCAGATCAATTTAGTCCAACGTATGATCAAAATAGCCTTATGTGAGTATGGGCTGGGTGCAAAAACGGCGATTGGTTATGGACTTGGGGAAGTGGTTGCGAATAACTATTGATACCCGAAGACCTTGCTTTTCAGTTTCCAGTATCTCTGGACAGATTAGTATAGAATGTGCGCTTTTCGTTTTCCGGTTCAATGGAAATGGGTAATTTAGGTGTTTTTCCTTGACAACAATATAGCTTGCCATTCTGGTGCGAACCCCAAGCGAACATGAAAACCCCGGGGGTTTCGCACCAGAAAAATAACATATATTCAATGTTGTGACAAAATATGTTTCGTTTAATTTGGTTCTTGTAGTTATAAATGGATATTAATTGAATGATAAACTGATTTTTCGTTATTTTTTTGACTGGAAATCGGAG # Right flank : CCACTTACTTTAAATTGTAAATAAACAACATTTAAAGCGGTCCTTTCCCATTTGGAATTGTCGAAGCTAGTAAAAAATGCTGGAAAATTGTTCATTTAGGTAGGACTTTAGGGTGTGACTATCGAATGACATACACTAAGATTGTTGTTACTTGGGTAGGGGAAAAGAATTTACTTTTGCGAAACTGAAAGGATAGTTACATAGGATCGTAAGGAGGACAATGGATGGCTTATATTGCTCACATTCGGGAAAGTGATGGGCAGCGGCAATCGGTTGAGGAGCATTTACTTGAGGTTCGAGCTTTAGCCGAGTCCTATGGAGAGCCGATAGGGGTGAAGCATATTACCGGACTTGCTGGCATGCTTCATGACATGGGCAAATTTACGGAGGAATTTAAGAATTACATCCTTCAGGCTGTAGAGAATCCGGACGATCCGCCGAAGCGCGGAAGTGTGGACCACTCAACGGCTGGCGGCCGGCTGCTGTATAACCTGTTTCAC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCTATGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 3573759-3572522 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985747.1 Paenibacillus sp. Marseille-P3787, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 3573758 31 93.5 35 .......T...A................... CTTTTTTGATTTAATGGGCATATCAAAGATTTATG 3573692 31 93.5 36 .......T...A................... GGCTTACTAATGGTATGCACAAAATGTAATTGGGTG 3573625 31 93.5 36 .......T...A................... TGAAACGGTCATTAATGGTACTGATGCGAATTTGGG 3573558 31 93.5 34 .......T...A................... CTCTACATCTGATGTTGATACCGAAGCTGCAAAG 3573493 31 93.5 35 .......T...A................... AATTCAGATTGAACCTTTGAACGTGCTTCGGCTAG 3573427 31 93.5 34 .......T...A................... TTCACCCTTCCCGAATCTTGCGCACGCATACCCG 3573362 31 100.0 37 ............................... CATAGCTAAGGAAGATGGCATTAACTTTTGTATTTCG 3573294 31 100.0 36 ............................... TACAGCATTCGGATTTCTGAAGATTTTTGATACTTG 3573227 31 100.0 35 ............................... CGTACTGACGTTTAAAAGCTCTTTTGATGGCATGG 3573161 31 100.0 34 ............................... GTTCTCGACTGTGTAGAACGTTTTGGCTGTCGCG 3573096 31 100.0 37 ............................... ATCCAATAATTCTTTTTTGGCATCCTCCAAAGTCTTG 3573028 31 100.0 36 ............................... TGCTGCGTGTATCGGTTGGCACTCTGGGCAAAACCG 3572961 31 100.0 36 ............................... ACGATCTAGGAGCTATCACCTATGTAACCAAAGCAG 3572894 31 100.0 36 ............................... TGGTTCGGCGATAATTGGTGCATAGTTTGGATTTTG 3572827 31 100.0 38 ............................... CGTCTTGGATTAAATCGTCAAGAACTGATAAAGGCAGG 3572758 31 100.0 40 ............................... TTTCGATCCGAGGAACTGCTTGCCCAAATATAGCAGCCTG 3572687 31 100.0 37 ............................... ACATTCGAGGTTCATTACAACGTAGAGTTTGATTTTG 3572619 31 93.5 36 .......T....T.................. CAGTTCTTTTTTATCAATTACAACTTGAAACATTTG 3572552 31 90.3 0 .......T....T.A................ | ========== ====== ====== ====== =============================== ======================================== ================== 19 31 97.1 36 TCGCACCCTATGCGGGTGCGTGGATTGAAAT # Left flank : AAAACTCAGCCTCCTTAATGTATGATCGTATGGTATTGGAATATTTGCAGCATGGAATAACGCCAAAGCTATACAGTTATAAAGAAGCTGCTCTGCAGGCCAATGCTTTTGTCCCGGCTTATTTATATGGAAAGAAAAAGCTTCCTCGCCACAGTCCAGAGTATATTGGATTTGGAGATGAGAATGAAGCCATCGAATATGTGGCAAGCCATTCGGAACTTTGGTTCCGACCCGAAATGGTTTCTCTTGTAAAGTGGATGATGAAAGGCAAGCACTGATTTTGAATTTGAGCTATGATGTAATCAATAAAAATGTAGCTTGTTATACTGGTGCGAACCCCAAGCGAACATAAAAACCCCGGGGGTTTCGCACCATGAAAAAAACATATATTTAATGTTATAACAAAATATGTTTTTTTATAATTTCTCTTTTGTGGTTATAAATAGATGTTTTTTGAATAAAAAACCGATTTTTCGTTATTTTTTGACTGGAAATCGGAG # Right flank : AGTTAACATTTTAAATATATGCCCCCTTAGTTATGGTCGCACCCTATGTGGTTGCGTATCATCCTCTGTTTAAAAGCCGAAAAGAATATAATGCGTAACGTCATATGTTCGTATGGATTGGGCGTTTATTTTTTTCAGAGTTAATAGACTTCAATGCATTCGAAAAATGTGCTTCCTAGCGTTCTGTAGAGACTATGGCTATATACAAATCTTTCGAATACGTAACTCCAGTTTCTGCGGCATTTCTTGCGATAGCTCTTTTTTTTCTAGTGGTTGAAAAAAGACTCATTTCTTCTAGCCGTTCGGGCGGGAATAACAAATAGTAATATAAATATGATTCAATGTTAAATTCTTGAAATTTTGATGAAAAGCAAGGTAGGGTTATTCCAAATGTGATATCCTTTTTTAAGGCTCAATTTTTTAGAGTTAATTAAGAACTGGAGGGAAAAGCAAATGACTGACAAATTATCTGGTTCTAAACCTACACAACCAGAGGCTGA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCTATGCGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCTTATACGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 3577390-3575941 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985747.1 Paenibacillus sp. Marseille-P3787, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================================================================================== ================== 3577389 31 100.0 38 ............................... CGGTTCAGGAATCGTATCATCCGTTTGGGTCTTGCCTG 3577320 31 100.0 38 ............................... AAGTGGCTCCTGCGTCTCTAACACAAGCTGGTATCGTG 3577251 31 100.0 37 ............................... TAAAAAGCGAACGTTGTCTGCAACGACCTCAGTAACG 3577183 31 100.0 35 ............................... ATATAATCGCCTGCGCTTCAGGGGGAATCCCCAAG 3577117 31 100.0 36 ............................... CTTTGAAGGTTATTTTCTCGACGACTCCGTCTGCTG 3577050 31 100.0 36 ............................... CTCCTATGCTATTGGATTTAAATCATCCTTATAATG 3576983 31 100.0 35 ............................... GTTACTTGCAATGATATAGCAGTGATTTGTCAGGG 3576917 31 100.0 36 ............................... TTGCGATGATCTATAAGGTCGCTTATTAGCTTTTGG 3576850 31 100.0 35 ............................... TATTACGCTTTGGGCATTGCCAGTTTTAATGTTCG 3576784 31 100.0 38 ............................... GTTGCACTCGATCCGTATTGGAGAGATGAGAACCGGAG 3576715 31 100.0 35 ............................... CTCCAGCGCTTCGCCAGGCTATTGATGTTTTAAAG 3576649 31 100.0 36 ............................... CTAAAGAACGATATGACACTGCTATCGAAATCAGGG 3576582 31 100.0 38 ............................... CAGTAACAATCATTGAATAATTTATGGAAATGATATCG 3576513 31 96.8 37 ................G.............. ATCCCATCCTCCTAGCGCGTCCCCGAAGTATCCGGTG 3576445 31 100.0 38 ............................... CTTGAATGGAAGAAGAAAGAATATAAAAAAACAGCAAG 3576376 31 100.0 36 ............................... CTAAAGAACGATATGACACTGCTATCGAAATCAGGG 3576309 31 100.0 38 ............................... CAGTAACAATCATTGAATAATTTATGGAAATGATATCG 3576240 31 96.8 37 ................G.............. ATCCCATCCTCCTAGCGCGTCCCCGAAGTATCCGGTG 3576172 31 100.0 38 ............................... CTTGAATGGAAGAAGAAAGAATATAAAAAAACAGCAAG 3576103 31 100.0 101 ............................... GCATAAATGTTCGTATAAAATAATAGAGGTGATTAGGGTCGCACCCTATGTGGGTGGATTGAAATATAAAACCATTGAAGTTTAGGTGCTAATGCCACCCG 3575971 31 83.9 0 .A..........C........T....C...C | ========== ====== ====== ====== =============================== ===================================================================================================== ================== 21 31 98.9 40 TCGCACCCTATGTGGGTGCGTGGATTGAAAT # Left flank : CTGCGGAATTTTCTCTTTTTGGCGAAAAGCTTGAATTTTAACTATACTTTTGCAGTTAACTGCTCTCAAAATCGAAACACCGACATTTTTTAATGCACTTTTGCATTAAGCGTAACAGAAGACTTCCTGTGGAGCATCCAATACTGGTCATTGTAGACAATATTGGATGTGGAGATAGATGAGAATGGAGCCATAGCATATGTTGCAAGCTACTTCGGAGTTTTGCTTCCGTCTCGTGGGCTGCACTTGTAGAGTGAATGGGGAAAAGATAAGTACTGATTTTGAAATTGTGTGCTTAGATGTAATTAATAAATATAGCTTGTTATGCTGGTGCGAACCTCAAGCGAACATAAAAACCCCGAGGGTTTCGCACCAGAAAAATAACAAGTATTTAATTCTTTTGAAAATTATGGTTGTCTTATTTTGGTTTTAATATTTACAGTTGGATAATTTTTGAAGTATAAATCGATTTTTCGTTGTTTTTTGACTGGAAATCGGAG # Right flank : CCAATCGTTCCTTGATATGCCTTATCTTCGCCTTACTCATGGAACGAGATGAAAAATGGTTTCAGAGAAGAAATATCTAGACATGGACGAGCACTTGAAATGGTGTAAGAATCAGCTGCAGACCACCTTTTGGAATTATGCAGTTATGTCTAGCAAAGGGAATTTACATAAAATTACAATTTGTCGGGTGAAAAATTCTTATACAATTATGAATTTTGAATTTCTCAGGATAATTGTATAGGATTAAAAATAGCATGTTTTTTATTGCTAACTCTATTTCCAACAAAACTTAGAGCAAGAGAGTTATTAATTCTGAATCGACAGTGTTTTGATAGAACTGTGGACGATCTTTTCTCGCTGCCTATCAAAGTAAAGAAAATCTGATCATAAATTGATGGGTTTTTAAGAAAATCAGGTATTGTTCCTACGCACGCTAAAAGATAATATTCGAAATATCAGATCGTTTTGAAAAAAAGGGGGGTTAGAAATGAAAACGATAG # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCTATGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 3908658-3908359 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985747.1 Paenibacillus sp. Marseille-P3787, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3908657 31 100.0 37 ............................... TTATAAGGGATACAGCCAGTATCAGGTTATTTCCCTG 3908589 31 96.8 36 ........C...................... CCGATCACATTCGTCTAAGTACCAGGCATATAAGAG 3908522 31 96.8 35 ............C.................. CTCATACTCCTCTGTACCGTACTCTGGGAATTCTG 3908456 31 93.5 36 ...T........C.................. CTATGAGGTTTGGCAATTCATTCTTTTCAGCTTGTG 3908389 31 93.5 0 ......................T...A.... | ========== ====== ====== ====== =============================== ===================================== ================== 5 31 96.1 36 TCGCACCCTATGTGGGTGCGTGGATTGAAAT # Left flank : ATCGCTTTTCATCGATTCGTTTGCCCAGAAGAATGATTTATACAGCGACGCAGATCAGAAAGCCAGCTGGTGCTTCTGGGGAGATGATATGGACACCGAGCTGATTAACAGTTTTGTGGACAGCATTGTTCAAGCCAAACCCGTTAGCGTTACGGGTGAGGATGGCTACATGTCCGCTCGTGTCGGCCTTGCCGCTTACGAATCTGCCCGTACAGGCCGACCTGTACAACTAAAGCCGCAGGGATAGAAGGTAAATAAGAAGTAAGGTGTCTGCCTGAAGCAGGGATTTCTGTTGTCTCTCTTTTCTACGGAACATCTGCTGATTTTGCGGTGCGAATGTGAAGCGAACATGATTTTCCCGGGGGATTCGCACCTGAAAAACACCTTTAAAAAGATTATTTGGAATATAAAGTAATTTGAGCTCGACCTTTTTTGACAAATATCGAGTTTTCGTTAGTTAAAAAAACGATTTTTAAAGATGTTTTGCTCAAAAATCGGAG # Right flank : TTGTTTTAGCGCTTGACTGTAAAAAATCACTCTCTTGTCACACTCTTCGTAGGTGCGTTAATTAGTCGCGTTTCTTTCCATGCTGGGAATATCTGCAATTCATCCAATATCGGATACACCTTTGGTAGGAAGTGAAATAGTAGGGCAGTTGACAGAACTGCTCCGTTTTTTTAATATAGTCCAGGTAGCTATTCCCGCACTGAGGATTTCCACATGACTAGTCATTCCTATCTAGTGATAAATATGATAAGTTTGCCGATGGCCCCATTAAGCAGGACCTAGCAAGAGGGGGTTGGGGTTTTTGAATTTTCCTGGGATTTCAAACTGTTTTTTCACCTGGCATCGAACTTCAAGGAGGTCCTTTTATGGGAAATATGCAAGACAACGTAAAAATCGATTTAACAAATATAAATAGCGAAAGAGGAAGCAGTGGATTTCCCGGAAGATGGATCGGCGGTATATCATTGATACTAGGCCCGATCCTTTTACTTATTGGAGTG # Questionable array : NO Score: 6.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCTATGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //