Array 1 225371-221167 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEHL01000005.1 Bordetella genomosp. 13 strain DE0060 NODE_5_length_423934_cov_11.384288, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================ ================== 225370 29 100.0 32 ............................. GGTCGATACGTCGCCTTCCGTGTGATTTTGCA 225309 29 100.0 32 ............................. GTTCGAAATGCTTTCTCGCCCGTGATCGCTTC 225248 29 100.0 32 ............................. TATCCGGCCCCATGGGCAAGCTGCTGGATACC 225187 29 100.0 32 ............................. GCGCGATCATGGCCCAGCAGTTCCGGGAGTTC 225126 29 100.0 32 ............................. TGACCATCGACGATCGCGATCAGCGCCTGGTG 225065 29 100.0 32 ............................. GTCCTGGGTGCAGCTGCGCGTGCGCGTGATCT 225004 29 100.0 32 ............................. ACGAAAGCAGCGTCGTTCACGCCGGTCTGCGA 224943 29 100.0 32 ............................. CATGGCCCCGGGCAGGCCGCCAAATGGCTCCA 224882 29 100.0 32 ............................. GCGCAGCACAAGTGAAATATGAGCCTTTTGCA 224821 29 100.0 32 ............................. AGCGCCGACGAGGTCGCTCAACACCTTGGCAA 224760 29 100.0 32 ............................. TGATCGCGCGGCTCTGTCGGCTCAGTGGCTCT 224699 29 100.0 31 ............................. TCGCGGAAGCGATCGCCGCGCCCGAAGCCCT 224639 29 96.6 31 ............................G TCAATCCGGCGCGCATTTTTCCAGTTCCTCT 224579 29 100.0 32 ............................. GTCGTGGCCACGCGAGTTCTGCCTGTTCTGGA 224518 29 100.0 32 ............................. GTCCGGGCATCCCTCGTTGATCAGCGCGCTGA 224457 29 100.0 32 ............................. GCTGGAGATCCTCGTGCCTGGCCTCGATCCGA 224396 29 100.0 32 ............................. AGGTCGCATCGCTCAAGCAGGCGCACGAAGAA 224335 29 96.6 31 ............................T TGGCGCGCCATGCATCGACAGCCTTCTCTGC 224275 29 100.0 31 ............................. TGCTTGTAGAGTTCGGGATCGATCATTGGGC 224215 29 96.6 32 .........T................... TCGGTGGCCGTGCGAGGCTGGCCCTCGACCGG 224154 29 100.0 32 ............................. TGCATCGGCTGCCCGAAGGGCGGCATGGGGTA 224093 29 100.0 32 ............................. CGGCGCGCCCAGCCTGCCGCCACCCCGGCAGC 224032 29 100.0 32 ............................. GGCTACATTGCACGCCCACTACACCCGTATCA 223971 29 100.0 32 ............................. ACTAAAAAAGACGGACAAGAAAAAGAATTTCA 223910 29 100.0 32 ............................. CTTGGCTGTACGTGGCGACGACCGACCAGCAC 223849 29 100.0 32 ............................. CACGCTTCGCCGTTACAAAATAGTTGGGACAA 223788 29 100.0 32 ............................. TAGGCGCCCGCTTCGAGTCGGCATCGGAAAGG 223727 29 100.0 32 ............................. AGGAAGGCCGGCGCCACGCCGGGCCATTTGTC 223666 29 100.0 32 ............................. TCGATCATTTCGGTCATCTCGCGGATGGTCAT 223605 29 100.0 32 ............................. CGCGTCGCGCCGGGCCCAGCGGTCGCCGAGGA 223544 29 100.0 32 ............................. GCAGGAGCCGGCACCCGCCGAGCCCAGCGATG 223483 29 100.0 32 ............................. GCGCTCGCGATATGCTGCAGGGTCGTCGCCGA 223422 29 100.0 32 ............................. CTATCCGCCGGTCCGCCGGCTACGCAGAGTGG 223361 29 100.0 32 ............................. TCAGCGGTTCGGTGCAGTCGGCTTCATCATTT 223300 29 100.0 32 ............................. ATCGGCTCCGTCTTCCAGGGCGACGACGGACC 223239 29 100.0 32 ............................. GAGGAAGGCTCCGGTACGCAAGCCGGCGCGCG 223178 29 100.0 31 ............................. TCATCGTCGACCTGTTCGCTGGCGGCGGCGG 223118 29 100.0 32 ............................. TACTGTTTATGCGACGTTTCGACGGCCCGGGT 223057 29 100.0 32 ............................. TACTGTTTATGCGACGTTTCGACGGCCCGGGT 222996 29 100.0 32 ............................. GTCAGGATCCTGGCTCTTGACCTGGCCAACCA 222935 29 100.0 32 ............................. GTGGGCGCGGGCACCTGGCAGATCGACCAGGG 222874 29 100.0 32 ............................. CGGCTCGATCGCCACCGGCGTCGGGGGCGCGA 222813 29 100.0 32 ............................. CTGGCGCAGCATGAGCGCGACCTGCGCGGCGC 222752 29 100.0 32 ............................. TGCCCACCCCGGGGAATGTATGTCCGGTCTGA 222691 29 100.0 32 ............................. GACGACCCCAGGCATGTGCCCATCCATCCTCG 222630 29 100.0 32 ............................. TCGGTTGTGACGACTCCGCACGATCAGAAGGT 222569 29 100.0 32 ............................. GAATGACTATAGCGGCTGGCGAGACTCAATCC 222508 29 100.0 32 ............................. TTCTTCCGTGCTCATGTTGGGTGCTGCCTTTT 222447 29 100.0 32 ............................. TGAAAAGTTGGGCGCTTTCCTGTAGGCCAGTC 222386 29 100.0 32 ............................. GGCTTTTGGTCCGCAGGCCGTATCTGGAAGCA 222325 29 100.0 32 ............................. GTGACGCCCTTGGCGTGACTGGTGCCGTCCAC 222264 29 100.0 32 ............................. CCCGACATGAAGCGCTACCCGCCTGTCATGTG 222203 29 100.0 64 ............................. CATAGCTGCGAGTCGCCGGCGGAGATAGACCCTGTCCGGAATTTCCGGAGGGTTGGGGGCGCGC 222110 29 93.1 32 ...........G................G TCCTTCTTGCGCTTCTCGTAGATCTGCTGCAG 222049 29 96.6 32 ...........G................. CTACTGGAGAAGACCGTGAACAATGAATCACC 221988 29 100.0 32 ............................. TGGCAGGTTTCGACCGTCCGTACAGAGCAGGA 221927 29 100.0 32 ............................. CGGCCGATGTCGTCGCCAGAAAAGAACGGCTC 221866 29 100.0 32 ............................. CTGAAGATTGCCGGCGCGGCCACCATGGCCCT 221805 29 100.0 32 ............................. CTGCAACGCGAAGTCGTCACCGATGATCGGCT 221744 29 100.0 32 ............................. CGCCTGTACGGGATGTGCCTGGCGGCCGAGCA 221683 29 100.0 32 ............................. GGCACGGCTGTCTCGGGCATTCGAATACCCGG 221622 29 96.6 32 ....T........................ GCCCAGCGTGGGCGGCGCGACGCCGTCCGAGA 221561 29 100.0 32 ............................. AAGGCCTACAAGCCGCGCCCCATCCGCACGCC 221500 29 100.0 32 ............................. AAGACCACCACGCCCGCGCCGACTTACCAGGA 221439 29 100.0 32 ............................. ACGACATGGCATAGGGGAAGCCGATGGACAAC 221378 29 100.0 32 ............................. TATCGGGACCGGATGAAATCGGCCTGTATGCC 221317 29 100.0 32 ............................. CGTGCCCAGGCTTCCAACGCCGGCACCGGAGC 221256 29 93.1 31 ........................A...A TGGAAGCGCGTCGCGCCCAGTTTGTCCGCCT 221196 29 82.8 0 ....G........AT.....A....T... | A [221194] ========== ====== ====== ====== ============================= ================================================================ ================== 69 29 99.3 32 GGTTCCTCCGCATGCGCGGAGATAGACCC # Left flank : GGGTGGTGTCGGTCTTTCTCATCTTGGAACGCCGCCCAAGAAGCTGCTTGAGATCGACGGGATGTGGATCACACGGAAGTCCGGGTGATTGGGTGATCTTTAAAAATTCGTTTGAATGCAAAACCCGCCTTTCCTCAATGATGGAATGGGGGAATCAATTCTCCGCGGCCGCGGAGATAGACCTCTAAGGATGTCAGTTGAACTGACCTGTAAAAGTTTCCTCCGCATACGCGGAGATGAGGTGAATGTATATCCCATCGTGGTCAATCCACGTCGCCTCGTTCAGACGGCGGGCGAGTGAGCGGCGGTTTTGGAGACATCTGGACATTTTTTGCATACCAGACTATTTGGTGTGCTTGTATGGAAGTCTTTCCAACACCAAGCAATGATAAAACTATCAGAAAAATTTTTTCATAGCTAAACCGTTGCAACTGGACGAGCTGGAAAAAAGAGATGAGAATCGCAGTTTTTCTTTTCCCATCAAGGATTTGGATGGGAGA # Right flank : AGCTCGCGGAATTGGCCGCTAGCCTGCACAATAGACTGTTCCGCATGCGCTGAGACAACGCCGACACGCCACCGGCATCGATGCTGGACATAATCCCTAGCCCACCCATCGCAAACAATTCCCCCACACCCAGTTAAAATGCCCGGTTTCCCATGCCCAGGCCCGGCCGCCCCCGCGCGTCCGGCCGCCGGGCGGCCGCCTAGAAGCCCCTATGCTCACCTTTCAGCAAATCATCCTTACGCTCCAGGACTACTGGGACAAGCAAGGCTGCGCCCTGCTGCAGCCCTACGACATGGAAGTCGGCGCTGGTACGTCGCACACCGCCACGTTCCTGCGCGCGATCGGACCCGAGCCCTGGCGCGCCGCCTACGTGCAGCCCTCGCGCCGTCCCAAGGACGGCCGCTACGGCGAGAACCCCAACCGCCTGCAGCACTACTACCAGTACCAGGTGGTGCTGAAGCCCGCGCCGCCGGAAATCCTCGAGCTGTACATCGGCTCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCATGCGCGGAGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //