Array 1 295761-296824 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUM010000017.1 Salmonella enterica subsp. enterica serovar Newport strain FW-S3-Oct NODE_27_length_479487_cov_93.210892, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 295761 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 295822 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 295883 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 295944 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 296005 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 296066 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 296127 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 296188 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 296249 29 100.0 32 ............................. TACGGGCATGGACGGCTCGTACAGTTTTGACG 296310 29 100.0 32 ............................. TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC 296371 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 296432 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 296493 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 296554 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 296615 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 296676 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 296737 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 296797 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 304769-305999 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUM010000017.1 Salmonella enterica subsp. enterica serovar Newport strain FW-S3-Oct NODE_27_length_479487_cov_93.210892, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 304769 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 304830 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 304891 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 304952 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 305013 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 305074 29 100.0 32 ............................. GCATTCCCGATCGTCAACCAGAGAACTGGCAC 305135 29 100.0 32 ............................. AAACCCGCGCCCGTGAGCTCGATATGCTCGGC 305196 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 305257 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 305318 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 305379 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 305440 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 305501 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 305562 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 305623 29 100.0 74 ............................. GGAGTATTTGAAATGTACTATAAGGACTTCATGTGTTCCCCGCGCCAGTTCTTCAGCTGGCAACGACAGAATGC 305726 29 100.0 32 ............................. GGGGCTTGTTAATATTTCTCTCACTGACTACG 305787 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 305848 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 305909 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 305970 29 100.0 0 ............................. | A [305997] ========== ====== ====== ====== ============================= ========================================================================== ================== 20 29 99.8 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCAAATGGTCGTTTTTTTAAATTTTGGTTTGTCATGAATGGTGTTGATGCTGAGAGATAAAGTATGATGAAATGAAGTAGTTAAATTTAATTAATTAATGGTATTCATGGAAATGGATGTAGATAGAGAAGCTGCAAAGATTTTAGTGAATCTAATGTAATAACTTCTCTATACAACGGAGTTAGAATAATACCCGTTATCCAACCAATCCAAAACGTTTACTATAATAGCTAGCTTCTCCGGCATCAGATACCAGCACAACCTGTCCGGAAGGGCGATGGTGGCGTTTTCTGAAACAGGCTAATGTTTCCTCATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATTAATGTCTTTTCTGGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //