Array 1 124170-123620 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072048.1 Akkermansia muciniphila strain Akk0496a chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 124169 31 100.0 34 ............................... TTCTTCAGGTCGTTGATTTTGTCCTCCACGATCT 124104 31 100.0 35 ............................... CCGGTCCAGGTCATCCATATCTCCGGGGCCAGGTG 124038 31 100.0 33 ............................... TCCGGGCGTCAATTAGAGACACCCAAAAATTGT 123974 31 100.0 33 ............................... CAGGCATGAGCGGTCCACAATCACTCTCTGCCG 123910 31 100.0 33 ............................... GTTAAGACCACCCGCGCATTGTTGCCCTACGAC 123846 31 100.0 34 ............................... GAGGGATGCCTGGCGCTTCCTGGGGTCTGCCACG 123781 31 100.0 33 ............................... TTCTAGATAGGGGGAACTAAGAGTCAAAAATGA 123717 31 100.0 36 ............................... CGTCACGTATTCGGTACGTGCGTCAATGAGGGATTC 123650 31 90.3 0 ..............A...T........C... | ========== ====== ====== ====== =============================== ==================================== ================== 9 31 98.9 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : ACGGGGCCGCCCTTGAGGGCGGCCCCGTTTCATGTTGGCGGAAAAGAAACTAACAAATGGGCGGGAATGAAAAATGGAGGCCGGAAAAAAAGCGGAACTCACCCTTGAAAACTCTGTGGACAAATGCCGGGACTGTCCTGGAAAAATGAACCGGGAATACGGATGAAAGACAAGCCGGGAATGACGGTGGTGTTCGAAGAAGCTTCTGGACGTTCCCCCAGGGAATGGCTAGCATGTCGGCATACCACCTGACTGTGCACAAAGCGGTCATGGCAGGAACATGAAACAATTCGTGCATGTCCTTTCTGCTGCGGCCCCCTTGCGCCAACCCCAAGCTCACAGAAAATCGCCGGGAAACTGGCGCACTCTGTAAGTCATTGAGGCTCGAAGATTGACAAACGAACCACTCATCATTACGACCTGCAAGGCGCAGGATGATTGAACAGGTTGGCGCAAAACGCCATTGGGACCTCTGACTTTCAATCCCTGCGCTTCAGGCC # Right flank : GCGGGGACGCTGTTATATGTTGCATACTTGCAGTTTGTGATGGACAGGAAGGAGGGAAAAGAGTGATATGAGTACGGTATGCAAAAGGATTGGTTGAAAGATCTTTTGGAGTGGAGTCCCCTCTTTCTGGTACTTCTGGCAGGGGGAGCGCTGTGGCTGTATTCCAAGTGGCAGCTCAGGAAGGTGGACAGATCGTTGAAGGAGTTATGGGGGAGCATTATCCGGAAGGCTGAGTCGGGCGATGCGTATTCCCAGTTTCAGGCGGGACGCATGTACCAGAAGGGAAATGGCGTTTCCAGGGATGCCGTATTGGCGGATGAGTGGTTTCACAAGGCGCTTCCCGGATTGAATCGGGAGGCCAATGCCGGAGACAGGGACGCCGCCTTTTGCCTGTACGAGTGTTTCAGAGAAGGGTTGGCTGTGCAGAAAGATGACGCCAAGGCTCTGCTCTGGCTTCAGCGCGCCGCGGAACAGGAGGAGCCGGAGGCCATGTTTGCGCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2187338-2186836 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072048.1 Akkermansia muciniphila strain Akk0496a chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2187337 33 100.0 34 ................................. ATAATCCGGAGGACGTGGCGGCCCTCCTGGATGC 2187270 33 100.0 33 ................................. CCGGACACCTTGGCATCACCGTACACCTTGGCA 2187204 33 100.0 35 ................................. TGTCGGACATGAGCGAGAAGACCCGCGAGAAGTTC 2187136 33 100.0 34 ................................. GAGGACCCGGACGCTACCTGGAGAGCCGTGTTGC 2187069 33 100.0 34 ................................. GTGGAGATTGCGAAGAATGGAGGGGTGTTGCTGG 2187002 33 100.0 34 ................................. AGCAGGAAGGAGAAGCGTTTGTTTGACGCCTGGG 2186935 33 100.0 34 ................................. TGAGGCTGACGGGTACAGGGCTGCCGACACGACG 2186868 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 100.0 34 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : GCTGCCCACAAAATCCCGGGTCAAGACCCTCCAGTACCGTTCCGGCATCACGGCCTACTACATCCTGACCATCCATCCGGACTCCATGACGCTGGACACCTACGCCGCCCCCAACAACGGCACCACGGACAAGGGCCCGCAAAGCGACGAATTCAAGAAACTCCCTTCCTACCAGATCCCGATGGATTAAAGGAAAGAACATTCCTTCCCTGTTCACCGGAAAGGAAACTGGACGCGCTTGAGCTTTCCGGATAAACTCCCTTCCACCTTGGAATGCCAGGGCAGAAAGAAGGAACATGCTCACCTCCCTTCTGCCGGACAGCGCCAACCTCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTGCTGCAAGTTATTGAGGACTGCATATTGACATCATGGAAACAATAAACGGCGGGTTGGAAATATCCCACTGATAAACAGGTTGGCGCAAAACATCCTCTGCCCACCTGAACATCAGCCGGATACCTCCCCTGCC # Right flank : CATCCACGGAAAATGGTTTACCCAAAAGCTGTTGGTCGCACCTCACATGAGGTGCGACTAAACCGTTTGGGCAAGCGTTGGAATATCCATCAGAGCGGACAGCAGAAAGAAGAAAACCGCATTTCCCTGACGTGATTATGTTCGCGATAGTTTCTGCACAAAGATTCCGTCCAAGTATTCCGCCTTGCTGTCCAGTCCATTCAACCGTTTGTTTCCTCATGGCCGAATTCCGGCTGAAGGTTTTGTTCTTCCACGGCCTACCTGTTTCCCGCCAAAAAGCAATGCCGTTTCCATAAAGTCTTTTTTCCTGCCGGATGTAAATCCGCCTTTCCTTGCCTCTCCACCAGCCTCTCAATTTGACTTTTTCCACATCCGCGCTTCCCCCAACGGGATATTTTCCATTCAGCTTCCGTATTTCATTTTTTCTTTTCCTCCCAGTTTCAGGCCGTTTCCATCCGGGCGGCCCACGCATTTCCACGCTCCACAACCCGTACCCTGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2485498-2485917 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072048.1 Akkermansia muciniphila strain Akk0496a chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2485498 31 100.0 35 ............................... TCCAACACTCCCAGGAAAGCACGAGCCTCACAGAG 2485564 31 100.0 33 ............................... CCGTCCGCCGCCGGATAGCTTGACGGAATGAAG 2485628 31 100.0 34 ............................... GGAAAGGACTGCCTGACCGAGCCGCTGCGGGTGA 2485693 31 100.0 33 ............................... TACGTATTGCCTGGGCATCGCCGCTTCCATGGG 2485757 31 100.0 33 ............................... ATCCGCCGGTGCAAGGGCGGTTACATGCCCCAG 2485821 31 100.0 35 ............................... AGGCAATCGTCGGGCATGATTCCCGTGATGTACAT 2485887 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 7 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GATGGCCTGCCTAGCGTCCGCCGTTTCGCTCTTCCTTGTCTGGCTGCTGAACCTCAACAGGTGGACGCGCAAGAGCATCATGTAAAAGATCCGGATATTTGTTTGCACGGACGCTGCGGAACGAGTGAAACTGTTCCGCAGCGTTTTTTGTTCGGAAAGGCTTTTTTCCGTGGGGGACAGCAAAGGCTGCGGTGTGGTTTGAGGAAAGTTGCTGGACGAATCGTCGTGGTCATTTTATTATAAATACGCATCACGTGCAGGCACCGGTTGTCCGGATGAGGCATCTCTTTTGAAGAGAAGAATCGGCATCCGTGGTTCCCGGCGCCAACCCCAAGCACACAGAAAATTCCCGGAAAGTCGGCGCTTTTTGTAACCTGTTGGGGATGTTAGATTGACAGTAATGATCATTTTTTAAGGCGTGGGTACTTGCAGATTGATATGGCAGGTTGGCGCAAATCATTATTTGTGCAATTAATGATCAATTTGTAAGCTCCCCCGCC # Right flank : CTTCCGCAATGCCGCCCTGCGCCGCAGTGAGGGACGACTGATCAGTGTTGAATTAAGGTTGAAATCCGTTGGAAGCTTGAAAACAAAAGAGGTTGCAAGCGATGCCGAGCACAAGTAGGTATCTGATCAAAACGGAGGGCAAAACACGGGTCAATGACAAGTATCTGATCAAAACGAATCACCCAGGAAAGATCTATGCAGATGGTGTGCAGACGCCCTGCACAGATATGGGTCCACGCTGCAAGAAATCGAAATCGCCAAGGATTACCCGACGAAAAATTAAAAATGTCCGGATAGACTGGACTGTGAGGTTAATCAGAGCGATGTGTCGGTCATGGACGACAACATCACATCGAGACTAATCAATTATCATCAACAACGCCGGGACCTCATGGACCTGCTCAATGATGCCATAGACAAATTGCATGCCATGCGATTGAGGGATGAGGACGACGTCACTGCTAAAGCGTGCGAGGATATTGCGGAGAGGTCAGGTAAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2519383-2520454 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072048.1 Akkermansia muciniphila strain Akk0496a chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2519383 31 100.0 33 ............................... CCGTCCGCCGCCGGATAGCTTGACGGAATGAAG 2519447 31 100.0 34 ............................... GGAAAGGACTGCCTGACCGAGCCGCTGCGGGTGA 2519512 31 100.0 33 ............................... TACGTATTGCCTGGGCATCGCCGCTTCCATGGG 2519576 31 100.0 33 ............................... ATCCGCCGGTGCAAGGGCGGTTACATGCCCCAG 2519640 31 100.0 35 ............................... AGGCAATCGTCGGGCATGATTCCCGTGATGTACAT 2519706 31 100.0 33 ............................... TTCCGCAATGCCGCCCTGCGCCGCAGGAGCGGG 2519770 31 100.0 34 ............................... ATCGGGGCGACCAACGAGCCCAAGCCCCTGAGCG 2519835 31 100.0 34 ............................... AATGCTGGATGGAAAGGTCCGGTCTCTATCTGGA 2519900 31 100.0 35 ............................... CGGATTGTGCGGGTGCGCGATTGGGCCGCAGATGT 2519966 31 100.0 34 ............................... AACGTCCAGCCATATCTCGCCGGCCGTAAAGCCG 2520031 31 100.0 35 ............................... CGGGATGCGGTCCAGATACCTGCTCAGGTCAGCGT 2520097 31 100.0 36 ............................... AAATCCAAAAGAATCATATCAATCCCTTATCAATAA 2520164 31 100.0 35 ............................... TATGATCTCCTTAAGAGAGTTTTTGCCTGGCATCT 2520230 31 100.0 33 ............................... CCCTCACGGGTCCGCTCACGTGCAGGCAACTGT 2520294 31 100.0 34 ............................... TCCGGCCGACGCCTGTTGCCTCCGCTACGTCGTA 2520359 31 100.0 34 ............................... CGCGTTACATAGGAGGTCGTCTCGCGGGAAAATA 2520424 31 74.2 0 ...T...................TCAT.CGG | ========== ====== ====== ====== =============================== ==================================== ================== 17 31 98.5 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : AGGGGATGGATGGCCAGACGGCTCTACCGGGAGATGGATTGGACGCTGCTGGATGATTTAGCGCCGGAGGATGTGACCATCGGCCGTGAGGTGCTGGCCAGGGTGCCGGCAACAGTGTGCCGCATCGAGGAGCCGTGGAGGCAGCGCAGCCCCTGGAGCGAGTGGACGGCCTGGTGCTGGCCCAGCCGGACAGCGAGCGCCGAGAGTTATGCGGCCAGGTTTGCAATGGTAACCACCGGCAGCCCTCGCCAGGATCACCAGCCGGCCAGCGAGCGGGCCAGGGTGATGCACCTGCTGGCCGACGCCAGGGCGGCCATGCTGCAGGACGGTGTGACCAGGGAGGATGACGAGGCGGTGGATTGGGGCGGCCTGATGGCCGCTTGCAGAGGCGATGCAGGAGCCCTGCACACCCCCTGCCCGGAGTAGGCAGGGACGGCTAAATTGATCAGATACCTGTCGTCAATTGATCAGATGTCATGGCGCGTTACAGCCTCACAGAG # Right flank : GATTGTTCATATTCCAGCATAGTGCTCCTTCATGTACACAGGAGAATGAATAAGCAACAGTTATGCTTCAATATTTCACGATGCTAGAAAGCCGCCAGATTTTTTCTGGCGGCTTTTTTGTGTCGGTTAAGACAGGTGGGACAGGCCCGGATGATTCAAGGCCGGTCAGTCTTCCATGTTATCCCCTTATGGATCATGATTTCCCGTCAGTCATTCCACAGGTATTCCTGATATTTTATCAGGCTTCCTGCCTCCGGCAGCTGTTTGTATGAGATAGTTTGCCCTGTGAAGACAAGGGGTTATCCCGTTATTGCTTCCATCTTTTGAGGTGCGGGAAGAATTGCTTCATGCCGGACCGGGCTTCTTCCACGGTATATTTCTTTTCCGAGTCCTTGTTGAATTCATCAAGGTATTCCAGGTTGTGCTCGATCATTTCATCCATGGTGCAGTCCCGGGTGAAACGGCCCTCTGCATAGCAGTAGTGGCAGTAATCCTCGTTG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2646360-2647171 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072048.1 Akkermansia muciniphila strain Akk0496a chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2646360 31 100.0 34 ............................... TATTACGACAAATCCCAGGTCTATACACGACAGG 2646425 31 100.0 34 ............................... CCATACCGGAAATAGTACCGTCCATGTGACGGCG 2646490 31 100.0 34 ............................... TGCTCTGAAAAACGGTAAGGGCGCCAGACTGCCG 2646555 31 100.0 34 ............................... ATGACTGCGTGCCTGGACATCAACCCGTCTTGGG 2646620 31 100.0 34 ............................... GGTGCGCTCCTCTGTCTCACGCCCCACTCCTTAA 2646685 31 100.0 34 ............................... CCGGCGCACAGTTCGGCGCGATCCAGCGGGAGAC 2646750 31 100.0 34 ............................... TTGCACAGCGCAGAGATGCAGCGCTTGCTCCCCT 2646815 31 100.0 34 ............................... ATTGCCACGGTCATTGACCGCATCGGGACGGGCA 2646880 31 100.0 33 ............................... AAGGGAGGCAGCGGCGTGGCGCATGTGCTGCGC 2646944 31 100.0 36 ............................... GATTGAGGCGGCAGAAGGAATTCCCCCCGCCATCTG 2647011 31 100.0 34 ............................... TGTGATTATCAAACAAAAACCGTTGAAACCTACA 2647076 30 80.6 34 .....C....T...A....A....-....G. CCGAATGACTTTTAGTCTTTCATCTTTAGTATTT 2647140 31 83.9 0 ........T...........CT...A...T. | A [2647160] ========== ====== ====== ====== =============================== ==================================== ================== 13 31 97.3 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCGCTTTTTTCTCCATTTCACAGGCTTTCCGCTCCAAGAACGGAAAGCCTTTTTTATGCCGGAATGTTGTCATGCACGGCGTCCCTCGTGCCGCACGGTCGGGAATTGTCCGGAAAACGAATGTGGAAGGTCCCATGAAATCATGGAAGGAGGCCTTTTCCCGACCTTCTTCCTGTTCCGTCTTCATCGCACACGCGGGAAAGTTTCTGGACGAAAGGCGCGGAACGGAATACTATGGCCTCTGCATCGCAGCAGGCGAGGGTTGTCGGGACGGCTGGAACGACTTCGTGGCGGAACCTTCCTCCGTCCTTCTCACTCACCGCGCCAACCCCCGGCTCACAGAAAAATCCCGGAACACCGGCGATTCCTGTAACGCTCAGGGTATCTTAGATTGACATCTCCCCATATACCATTTTAGGCGTGGAATACGCATCTCCGCGGACAGGTTGGCGCAAAATACCCTTTGCGTGCCTGACTCTCAATATGTATATATCCCCGCC # Right flank : CCATCATGAACGCATGTTCCGATGTTTTCTTATGATGATTCCTTTTGGCTGAAAGGCTTTTCCATGACGTTCAGGCCATGAAAAAGCGCCGGTTCCCACAGGGAGGGGACCGGCGCTTGCGGTATAAGGGGGGAGGGGTTAATGGGCGCAGCCGGCGCAGGCCCAGCCTTCGCGGATTTTGGCGAAGAAGTCGTTGCCCTTGTCATCCACCAGGATGAAGGCAGGGAAGTCTTCCACTTCAATTTTCCAGATGGCTTCCATGCCCAGTTCCGGGTATTCCAGCAGTTCCACCTTTTTGATGTTGTTCTTGGCAAGAATGGCGGCGGGGCCGCCGATGGAACCCAGGTAGAAGCCGCCGTGCTTGTGGCAGGCGTCCGTCACCTGCTGGCTGCGGTTGCCCTTGGCGATCATGATCATGGAGCCGCCGTTCTCCTGGAACAGGTCCACGTAGGAATCCATGCGGCCCGCGGTGGTCGGCCCGAAGGAGCCGGAGGGATAGC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 3067588-3067351 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072048.1 Akkermansia muciniphila strain Akk0496a chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 3067587 33 100.0 34 ................................. CACTCTATTTTGGATGCGGGAAGTAGCTTGTGAG 3067520 33 100.0 34 ................................. CATCCGTAGGAATCGCCGTCGGAGTAATGTCCGT 3067453 33 100.0 34 ................................. CCACTGATTACCAGCACATGCGCCCGCCTATCAA 3067386 32 87.9 0 ......................-......T.CG | C,TC,C [3067355,3067358,3067363] ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.0 34 GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Left flank : TTTCTCTCCATGTATATTCTCATCACCTACGATGTTGTTACGGAAGACAAGGCCGGCCAGCGCCGCCTGAGGCGGGTTGCCCGTGCTTGTGAAAACATCGGGCAGAGAGTACAGAATTCCGTGTTTGAATGCGAGGTCTCTCCGGCCCAATTGGTTGACATCAGGAGCAAGTTGCTTAAAATTATTGATCAGGACAGCGACAGCCTCCGGATTTACCACATGGGGTCCAATTGGCATCACAAAATCGAACAATTAGGCAAGGAAAAGAGCTATGACATTTCCGGGCCGTTGATCATTTGAGTGCTGTTTGACATGGCCTTTGCGCCAACCCCAAGCTTACATCAAATTGCCGGGAGGTCGGCGATTCTTGTAAGACATTGGAAAACGCAGATTGACAACCAAGTATGATGAAGAGAAGACGGTATGTGATGTGCCGTCTTCGTGAAGTTGGCGCAAAGCCTCACTTGCATGATTGATTAACAACATGTACCGTTGAGGCA # Right flank : ATGATTAAAAAGCACCCCGGACCAGATAAGTCCGGGGTGCTTTTTTGTTTTCTGCCGCAGGAGTCAGAGAATGGGACGATCTTTCGGGTTGAGTTCGGCGGGCGGCAGGGAACGGAGCAGGGCCAGCAGGGGGTCCTGCACTGCGGTTCCTGTTTCACTCTGGCGTTTGAATTCCTCTTCTTCCTGCTGGAGGGCGGCTAGTTTGGTGTCTTCCACCAGGGCTTTGAATTTGTCCGCCTGGGAGTATTCTCCGTCTGTATCCCGGAAGACACGGGCAAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGATCGTTCATGAGTCCGGCTGTGTTTGTTTGTCCAGCAGGTTTCCGGCCAGTTGCCTGCCTTTCTCTGTAGAGCGGTAGACATAGGGACGGCAGTCCCCGAAGCGCTCCACGTAACCCTGCGCGATGAGGTCCTGCAAAATGTTTGTAACGGTGTTGGGGTGCAGCCGCGTCGTTTCCGTGATGGTGCT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //