Array 1 37260-37410 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIGA01000035.1 Streptomyces platensis strain DSM 40041 contig00035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37260 29 93.1 32 ........................GG... GATCTCCGCGGCCATCCCCACCTCCAGCGCCA 37321 29 96.6 32 ....................C........ AGGGCGGCGTTGGCGAGGATCTGTTCGGCGGT 37382 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 GTGCTCTCCGCGCAGGCGGAGGTGAACCG # Left flank : AAGGGGCACAGGGGCGTCCGTAGCCTTCCCAGACAATCCCTCCTGCGCTCCGCTGCGGGACTCAAGATGTGTCGAGACCGTCCAACAAGTCAGTCACCACAAGCACGGAGCACGCCGAATGGGATCTCAATGTTCGAGCTACTTCCATTCAGGCACTGGCTTGAGCGCCACCGTCACACCATGGCGACTATCTGCGCCACGACGGCAACGACCGTGCACGCCTTGCCACTTCCGAGCAGCCAAGGGATAAGCCGAATCGGCCAGCAGAATGCTCAATGGCAGCCCTTGATACCCCGTAGCCAGCACCAGACCAGCACGGGACAGGTGATGACAGGTGCTGAGGGGTGCCTCCAGGTCAGCACCGAGCCAGCACCCCTCAAGATCCACCCCAGATGCACACCGCCCTCACCTGCGCGTTTGCCATATCACCGCTGCCGCGGTAAGGAGCCAGCACTAAAAGGTGGGCCGGAAAGTCACGTGAGGATGCGGCGACCCCGGCT # Right flank : GCTCTAGTTGGTGTGGTTCTCTCGCGCTTGACGTGTCAGTGCCCTTCGGCAGACTTGGCCGAGAATGCGGCAGTGGATCGCGGGAGCCGCCCGGCTTATGCCAGCTGCACCGATGGGGGACGCAGAACATGAACCAGGACGACACACCGGGCGGGTACGCGGGACGTTCGGTCGCCGCCGGGCGTTACCAGCTGCGTGATCTGCTCGGCCAGGGCTGCATGGCTTCGGTCCATCTCGCCTACGATTCGGTACTCGACCGGCAGGTGGCGATCAAGTTGCTGCATACCGAGCTCGGGCGGGATCAGGTCTTCCGTGAGCGGTTTCGGCGCGAGGCCAAGGCCATGGCGAAACTCAGGCACACGAACATCGTCTCGGTCTTCGGCATAGGCGAGGACGATCTCGGCGGCGTGACGACGCCGTATATCGTGATGGAGTATGTCGAGGGCAAGCCGCTCGGCTCAGTGCTCGAGGCGGAGGTCGCGCAACACGGCGCGATGCCG # Questionable array : NO Score: 4.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCAGGCGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22220-21217 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIGA01000037.1 Streptomyces platensis strain DSM 40041 contig00037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22219 29 86.2 32 AC.T..........G.............. CTCGCCCACCTTGTACAGAGCCTGCTCCGTGC 22158 29 82.8 32 G..G.......G.AT.............. ACGGCGCCGAGCTTGCACGCCAGGCACCCGCA 22097 29 96.6 32 .........................C... AGCTCCATGTACGTGTCCGAGGTCAAGACGAT 22036 29 96.6 32 .........................C... GATCACCTGTTCGAGGGCCAGGCCGCGGTTGT 21975 29 100.0 32 ............................. GTCTTCGTCGTCGCGGTGCCCGGCGGCGGCAT 21914 29 100.0 32 ............................. CTGCTGGCCCGCGCGGAGGCCCGGATCGCGGG 21853 29 96.6 32 .......................A..... GCCTACGCTGGCAAGCTACGCTCGCGCGGCAT 21792 29 100.0 32 ............................. CTCACCCCAACCACCGCGAACGCCTACGCCAA 21731 29 100.0 32 ............................. ACGTGGCCTCGGCGACATCGAACAGCGCCATG 21670 29 93.1 32 ...G....G.................... CGGTGAAGAACCCGTTCGACGCGGTGGCACGG 21609 29 96.6 32 ........G.................... TGCACCGGAATCTGGAGGATGAACTTGAAGCT 21548 29 100.0 32 ............................. GAGCAGCAGGCACGTACCCTCCTTGAGCGGCT 21487 29 93.1 32 ........G..G................. GGCTACCGCTTCTACGCCGACGACTACCGAGT 21426 29 96.6 29 .........................A... GTCCCTCCAGCTGAGGAGGGTGCTGGATG G [21409] 21367 29 86.2 32 AA...G...C................... TGACGTAGGCCAGCCTGCCGATTCGTCGGTTG 21306 29 100.0 32 ............................. CAGGATCGTGAACGTAAACCGCCATGGTGGCC 21245 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 95.4 32 CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Left flank : TCGCCACCAGAAGCGCAGACCCTTTGGTCTCGTCTCTGGCGGTGCGCAGCCGCGCGACCTGTGCGAAGGGCGCGTCCTTGCCGAAGAGGTCGAACAGGTGACGGTGACCGTCAAGGTAAGCATTGAGCTTGTCGCACTGCTCAGGAGAGAAGGCCCCAGCCTTGAACACCGCAACCCACTCAGCGGCATCCCGCGGCCGTCCCAGAGCATCCACGACGATGGGCAGCAACAACTGCCGATAAATCGCCGGTTTCTGGGTCGGCAGCTCAACAGCGATGTCCTGGAACCGCTCGGCCTCCAAAAGGAGCCGTCGCACGCCAACTTCTTCGAAGGCGCCAAGCCCCCGATACCCCTCCCCCGCAACACTGTTCGAGGAGCGTGCGGACAACCACACGTCATCCAGCAAATTACACAACTAGGCTTCCCCCCATACATCCACGCCATGAGACGCGAGAAGCATCGTTACACAGCAGCCCCCAGCCCCGTCTCCAAATGCCAAA # Right flank : TGGCCGCAGAGTGGACCCAGCCGTACCGGCAGCTGCCCACGCCCGCCGCGAGCATCGTCGCCGCCTCCACTGACGACATCATGGCCACAAACGCCACCGAGACCCGCCCGGCGCCCCCTGGTCGGACTCCAAACCGCAGGCATCTCCCTCTGGCCAGCCCGACGATCCAGACGAAACTGCCAGCTTCTCCCACACGTACATGTGCTGTCGGCTCTCCCCGTGACGGGCTCCCCGGTCCCCCCGTCCCACTGCCCGGAATCGGGCTCACGGAGCACGTTTCGACGGTCGTGTGGACCGAGCGATCGGGATATGTGCTGGCTGGTCGCTGAATCTGAAGTCGGCCGCCCTGCACTGCCTCGGCCGGGGTGCATGACGGTGCTCGACGAGCCAGCTGGACGACGGCAGGCGCAGGAGTGCGCCATCATGCATGAAGGTGGAGTAACGGCCAGCGTATGGCCGCCAACGGCGCCAAGGGTTCATCGACCATGGCGAGTGCGGTA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 38412-37412 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIGA01000037.1 Streptomyces platensis strain DSM 40041 contig00037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 38411 29 100.0 32 ............................. AGCCGTAAGGCGGCGTTGAGCCTCAACGTGGT 38350 29 96.6 32 ...........G................. AAGTACCAGCTCACCGAGGCGCAGCGTTCCCC 38289 29 93.1 32 ...........G.........C....... GAGATCGCGCGGCTCGACATGAAGGCCGGCGC 38228 29 96.6 31 ......T...................... CTGGGGGGTCCTATTGCCGGAACTTCATCGC 38168 28 89.7 32 .............GT.......-...... ATGGGCGTGGGGCCGAAGAAGTACGGGCGAAG 38108 29 93.1 32 ..............T...A.......... GTCGTCAGTTGCCACGGAGCCGACTGGCCCTC 38047 29 100.0 32 ............................. AAGGACGACATCGTCAAGCTGACCCGGCTGGG 37986 29 100.0 33 ............................. CAGCATCGGAGCGGTTGGGCTGCTCCAGGTCAA 37925 29 89.7 32 .C..........T...........T.... TGCACGCCCTGGTCGTCGACCCCGCCCTGCTG 37864 29 100.0 33 ............................. GTGGCTGCGAGCATGGCGGTCTCCTGGTCTGTG 37802 29 79.3 32 TG.G.......G.AT.............. GACACCGAACTACGGAAATCGATCACGACGCA 37741 29 72.4 30 G..G.......G.AT...A........TG CACCCCATCGACCGCCCCTTGGTCCACACC 37682 29 79.3 32 G..G.......G.AT..........C... CGGAAGTACGGCCGCCAGAGGGCTGGTCAGAG 37621 29 72.4 89 G..GA.....TG.AT..........C... TGGACGAGCCTCGCCATCGATGCCCCAGCCCACTGCCCCCGCCCCCGGGTTGGTCCCGCGGATCGGGGCCCCGGGGGCACCGCCGACCT 37503 29 89.7 32 .C...............A.A......... TGCGAGACGAGGTCGGCTTCGCCTGCTTACTC A [37491] 37441 29 75.9 0 .....T.....T.........C..CCG.T | G [37419] ========== ====== ====== ====== ============================= ========================================================================================= ================== 16 29 89.2 36 CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Left flank : GGCACCCACGACACCTGGGTTCGGCCCCAGGTCCAGCTCGGGAACCATTACATGGCCGACTTCATGATCGCCGGTGAGACTTCCCTAGGGCTTCGCTGGACGCTGGTCGAGCTGGAGAGTCCGGTCAGCCGCCTGACCAACCCCGGCAACAAGCGGGCGACGAAAACCCTGCGCCACGCGGTTGACCAGATCGAGGACTGGCGCAAGTGGCTTTCCAACAACCTGCACTACGCCCGCTCCGCGCGCGGTGCCGATGGACTGGGCCTGCCGGGCATCACGGCCGAGGTTCCCGGCTTGATCATCATGGCTCGCGAGGACGCCGACGACGCGGCTGCCGACATCCGGGAACTCCATGCCCGGCGCTCACACATCCAGGTACGCACCTACGACTGGCTGATGCGTATTAACGAGTCACCCGACCCCCTACGTCGAGACGCCCCCGACCAGCGCCTTCGACTCGCTTGAAATCAGCCGCACATCCACCCCTTCTACGCCATGAG # Right flank : TCACAACAGTCGTTCTGGTGTTGCACCAGCCCTACCGAAAGGGTGACTTTGTTCCGTCAATCGCGAATCGGCAACACAGAGGGTGCGGTCAATGCTTTCAGACTCAACTAAGAGTCTCGGTTGGAGGGATCGCCAGCCTTCTTGCTGGCTCAGTGCACCGTCAGGAGCGCACAAGTTCACACTCAGGAGAATGATGAAGCACATGAATGGTGAGCGTCCGGTAGGGGCCTTAGCGCCTGTCATCTACGTACTAAGTGTTGTCCCGTGCCAGGTGATGGGCAGTGTCTTGTACCTTCAGGGGAAGTCTCCGCACGAGGTCTTCAGCCTCTTGGCAGGATGTACTGCGATCGCGGTCGTTGGTGTTGCCGCGATGGGGGGAGGTAGGTACGTCGCAGCTGTAATGCGCGGCCTTGCACGCGTTGGAGAATGAGTCCAAGACATGCCACAAAGAACCACTTTGCCCCGTTAAAGCGGGGATGGCTCCACAGATGGTGCCGTCT # Questionable array : NO Score: 4.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:-0.28, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 40993-40170 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIGA01000037.1 Streptomyces platensis strain DSM 40041 contig00037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40992 29 100.0 32 ............................. TGCGGCCACACCTGGGCCGTAACCCGCGACTT 40931 29 96.6 32 ..................A.......... CGCGACGAACACCCGCGCCCCGGCGGCTCAGG 40870 29 100.0 32 ............................. ACGGTCGGCATGATTTTCACCAGCACGCTGTA 40809 29 100.0 32 ............................. CTCCGGAAGCGCCTGAAGGAACTTGAGCCGAA 40748 29 96.6 32 ....................A........ AGCTTCACGCCGGCCCGGCGATACACCTCGTC 40687 29 93.1 32 ..T..........C............... ATCATGACCCCGGTCGACGTGCCCTGGTGGGG 40626 29 93.1 32 ..A.....T.................... TCCTGGCGCCCGGTGACGGGGTCGAACGTGTT 40565 29 100.0 32 ............................. ACCGCCGACAACAGCGTGTGGGGCGGGTACGT 40504 29 89.7 32 .................A..AC....... GCGATTAGCTCCATGGGCTTCTTCTGCTCGGG 40443 29 82.8 32 C..C.......A.CC.............. TGCTTCACCAGCGCTTCCGCAAGACGGCTGTA 40382 29 100.0 32 ............................. TGGACCCAGGCGCCGGAGGGCAGGTTGTGTCG 40321 29 96.6 32 ..............A.............. TCGGAGACCGTTCACCGCCGCCGAACCACCGT 40260 29 96.6 32 .................A........... TGGACTAGTGGCGCGCCCGTGTGTCGCCCGGC 40199 29 79.3 0 ..A........A.CC..C.......C... | T [40176] ========== ====== ====== ====== ============================= ================================ ================== 14 29 94.6 32 GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : CTACGACACAGGCTGCGGGGTCAAGCCGGGGACAGGACCACGGCCGCCCATGCGACCGGCCTGGGTGGATCAATCGGCGGCGCACCGCACGGCGCGCTCGCGTCCTGTTCGGCCTCAGGCACCGTCGGCGACGCCTTTTATGAGCCCGTTACTGCGGTAGGCGGAACAGCTCCCAGGCAACATCTCCATCAGCCCGGCTGCATACATCCTGCCGTCGGCGGGCGGCCAAGCTGAATCGGGCATCGCGCCCCGCCCTGGCGCCGGCTCAAACCCGGCAAGATCCGGCGTGACGGATCGAGAGAGAGTCCAGTATTAGCCTGGGGACACCGACATCACATGCGCCAGCGGTACGACGCCGGAGCGGTGCCTCAGGCCGCAATGGCTCCGTGGATCGCTGCCGCCCCGCTGGACCCGCAACCCAACCGAAGGGCATTATGTCCGAATCGCTGAAAGTAAGTAAAAGCAACTCACCGCCTTCCTGAAACCGCAGCTCGCGGCCT # Right flank : ACCGTGCTCCGCAAGATGAACCAGGACTCCGGCTGCTCCCCGCACCCGCGGGGGGGAGCACTGCGCCGAGCAAGGCGGGGGCGGCCTTGCCCTGCGTTGCGTTCGCTCATCCCGACGAACGGAAAGGTCACGATGGCCGACGACCAACAGCTCTGGGGCTAAACCGAGGTCGCCTCCCACGTGGGCATCAGCTTCGGCGCTGCCCGCAGCCGGAAGAGCCGGGGCAGCCTGCCCGCGCGCGACGACGACAGCGTGCCGGACCGGCCCCGCTGGAGGCTGGCCACGTTCAGGGGCTCGAAGACGGTCGGCCGAGGTTTCCGCAGCGACTGCACGGCCCCTCCCGTAGGAGCCCGCTCCATCTGGTTGACCGGCACCCGTAACCACGAGGACTGTGGTCATCACGTCCAAACTCCGGTGCCGTCCCTTCTGTTCCACTCGTTACCCCAGGTGGAGGAACCGCAACACCGCGTCGCCGATTGTGGCTACGGTGGGCAAGTCGG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 45118-43930 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIGA01000037.1 Streptomyces platensis strain DSM 40041 contig00037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45117 29 100.0 32 ............................. TGGCCTCGGCTCAGGTGGCCGTCGAGGACCCG 45056 29 100.0 32 ............................. CAGTCGGCGGTGGCCCGCGCACAGCGGGCAGC 44995 29 100.0 32 ............................. GCTCCACGCCATACCGTTTCCGTAGGCCCGGC 44934 29 100.0 32 ............................. ATGGCCGCCGCCCGCAAGGCCGCCGCCGACTC 44873 29 100.0 32 ............................. ACCTGGCGCGATCGGTGCCAGGATTCACAAGT 44812 29 100.0 32 ............................. GCCGCGGCAGGCGTCGTCGCCTCGTCGTCCTT 44751 29 100.0 32 ............................. GAGCCCAACCTCGGCAGCTTCCTTCGCGGCTT 44690 29 100.0 32 ............................. GAACCGGGACCAGTCGGACCACGACCGGCAGT 44629 29 100.0 32 ............................. CGCCAGTTCGGCGCGGAGCCAGCTGGTAGACA 44568 29 100.0 32 ............................. GAAACGCCCGGACAGGTACCGCGTGATGGCGG 44507 29 82.8 32 C..C.......A.CC.............. GCCTTGGCGTCGTCGACGCTGGAGAAGCCGTT 44446 29 82.8 32 C..C.......A.CC.............. GCCGGGGCGTCGGTGGGCACGTACACGTCCAG 44385 29 82.8 32 C..C.......A.CC.............. TTCTTCGCGGGATGACGACCGGCCCGCGCTTT 44324 29 82.8 32 C..C.......A.CC.............. GGAGTCCAGTATGCCTGCCATCCCGTCTGAGC 44263 29 82.8 32 C..C.......A.CC.............. CCTGTCCTGGTCCAGGACGGTGTCCTGACCGA 44202 29 82.8 32 C..C.......A.CC.............. GGTGCTCTTCAGTGAGCCCGGTCTCGGCAAGT 44141 29 82.8 32 C..C.......A.CC.............. CTCCAGCTACAGGACTACTACCTGCGCCGTGG 44080 29 82.8 32 C..C.......A.CC.............. GGCGTGACGAACGAGCCCTTGCCCTGCCGGGT 44019 29 82.8 32 C..C.......A.CC.............. CACCCCGACGCCGAGCACTGGATCGCCGACCT 43958 29 82.8 0 .....................GACC.G.. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 91.4 32 GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : GAAGCCGCGTCCGGCTCGGTGCAGGTCGGGAACGAGAAGGAGGGTTGGCCGCTGGTTGGAGACGACCTGGTTCAACAGGCGGTCCAGGGGAAGTGGCCCATAGCCCAGCTGACGGCCGAGGTCCCAGGCGAACGTATCCGCGGTCAGCCCATCGGCGGGGATGGTGGCGTGGACCGTCGTGCGGGGGTGGCCAGCGGCAGCTGCTCCCGCCAGAAACCACGCCAACAGAAGGCTTTTGCCGGTGCTTTGACCGCCGCGCACCAGGCGCAACCGCGGCCGGTCTCCGTCCACGTCGACGACCCAGTCGAACAGCTGCTGCCGGCCGGGCACCCCCACATGTACCAGCGGTACGACGCTGGAGCGGTACCCCAGGCCACAATGGCTCCGCGGACCGTTGCCGCCCCGCCGGACCTGCAACCCATTCGAAGGCCATTATGTCCGAATCGCTGAAAGTAAGTAAAAACAACTCATCGTCTCCCTGAAACCGCAGCTCACGACCT # Right flank : CCTCAGCACTCGCGGGGGTGGTCCCGCGGCGCGGTCGCTGATGGATCATCCAGGACTGCTGCGGGGGTGTTCCCGTAGCAGAGCGCCGCAGCTTCGCACAGGCAGACTGCTCCCCGCACGCGTGGGATGGTGCCGCCTCGCTGCTCACTGTGCGGTCGTCGTCCTTCTACTTCGCGCGGTCGCCACGGAGCGCCAGGGCAAGACCTGAAGCCCCCCTGTCCCAAGAGCCGCGTGGCCTCGAAGCTGTACCTGTATGTCGTGAAAGCCTGAGTTAGTGAAAGTGGTTCAGAACACGGTGCTGGGCGTGTAACGATGCAGGTCACGAAGTCTGCTCCCCGCGCCTGCGGGATGGTTCCCACCAGCAGCCTGACTCCTTCGCAGTCTCCGCCTGCTCCCCGCACCCGCGGGGATGGTCCCGCGCGGCGGGTGCGCGGGACGTAGGTCGGCTCCTGCTCCCTGCAGCCGCAGGGATGGCCCCAGCCGGATTGCGCCCCGATCGA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : TGCTCCCCGCACCCGCGGGGTTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 48436-47863 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIGA01000037.1 Streptomyces platensis strain DSM 40041 contig00037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48435 29 100.0 32 ............................. AAAGTGATCCTCACTCACCTGCCTTTCAAGGT 48374 29 100.0 32 ............................. ATCACGCTCACCATGGACGTGTGGCCTCACGA 48313 29 82.8 32 C..C.......A.CC.............. GGGCGCTCGTCCACCCCGGAGTCCATGCCCCA 48252 29 93.1 33 .............CC.............. CATGAGGGAAATGGTGTGTGGGGGTGGGATGCT 48190 29 93.1 32 C..C......................... GCCCAGCCGGTTTGATTGATGTCCCACCGGTA 48129 29 96.6 32 .............A............... GGTGGACCGGGGTCACGGTGGCTGGTGACGAG 48068 29 89.7 32 ....C......T.A............... CGCCGCAACCGCCGGCCGGAGGGCATGACGGA 48007 29 79.3 32 C..T.......A.CC..........C... TTCTTGATGCGGTTCGCCACCCGGGACAGCGT 47946 29 82.8 26 C..C.......A.CC.............. CGCCGCCCGGATACGTGGTCTGGCCC 47891 29 69.0 0 CCT.CT.....A.CC.............G | ========== ====== ====== ====== ============================= ================================= ================== 10 29 88.6 32 GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Left flank : GTGGGCCATGACCAGCGCGTTCGTGTCTTTCAGCATGGTCAGGGCCTTCCCTGCTTACCCGGCGGAAGGTCCCCGGAATGTCCCTGGGACAGGCTTGAAAGTCCCCGAAAAGTCCCCGGGATGCCCCCGGCCGGCGAGGGCCTCAAGGGAAGCCATCCACTTATTGCGGTAGGCGGAGCAGCTCCCAGGCAACACCTCCATCAGCCCGGCTGCAGAGGGCCCACCGTCGGCGGGCGCCAAGCCGAATCGGGCATCGCGCCCCCATGGCGCCAGCTCCATCCCGGCAAGAGCCGTCGTGACGGGTCGAGAGAGAGCCCAGTATTAGCCTGGGGACACAGACATCACATGTACGACGCCGGAGCAGTACCCCAGGCCACAATGGCTCCGCGGACCACTGCCGCCCCGCCGGACCCGCAACCCACTCGAAGGCCACTATGTCCGAATCGCTGAAACTAAGTAAAAACAACTCACCGTCTTCCTGAAACCGCAGATCACGACCT # Right flank : TCGTACCCGATGGACTCCTCAGCAGCCCGAAGAATCTTCCGACCCACCCGCCTCGGCAGCCCTGTTGCTGGATACGCATCGCTACCTCAGCGGCCGCAGCCGCGCCGACGATGATCGACGCTTTGCCACGCTGCGCCGTCATGGTCCATTCGGGAGACCTCCGACGGCGCAATTCGGAGCCACGGGCACTCAAGGCCCACCTCGCGCCGTAGCCAAATCGTCCAACCGAGCCCACATTTGTCGTGGCCGGAAATTCGAGCTACAACATCACCCCCGGCGGGAAGACCCGCCAGGCATGCTCGAAGTGATTGGTGCGGTTTTGGCGACGGTCGTGGACAAGGGAGCCCTGGATCGGTGCTGGCTTCTGGCGCTGAAGGCCGAACCCTGGACAGCACCGAGACGGACGAGATGCGCCTTCTTCACTGTGCGTCACCCCGACGCTCACACAGTCTCACGCACAGACGCCCGCACGACGGGCCCATGAAGGTCAAGTGGCGCTG # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.43, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Alternate repeat : TCCCCGCACCCGCGGGGTTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //