Array 1 80674-77861 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJOL01000005.1 Streptococcus intermedius strain A3 D8830_contig005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 80673 32 100.0 33 ................................ CTCTAATTTTGTAAGAGAAATCCCTCTTTTATC 80608 32 100.0 33 ................................ AAGTATAGGTTCTACTCTTGTTAAGGCAGCGAC 80543 32 100.0 33 ................................ AACTTTTTAGGTGAAAAAGTGTTGACATATCAC 80478 32 100.0 34 ................................ AACTTTATAGCGTGCATAATCTCCATCAACTATA 80412 32 100.0 33 ................................ AGTCAAGAACCTAGCAGAGAATAAGAAGCTATT 80347 32 100.0 33 ................................ TCATAAATGAATTATATCACAGAAAAGAAAAAA 80282 32 100.0 35 ................................ TTGTATTGCTTTTTTATCTCTAGCAACTGCTGTCT 80215 32 100.0 34 ................................ TTATTGGTTTAGATGACAAGAAACAGAATAACAT 80149 32 100.0 34 ................................ TGCATCGTTAAGCTCTTTTTCAGCTGTCCGATAA 80083 32 100.0 34 ................................ GCGAGGAGCAATATCACTTGAACCCTGATATGAA 80017 32 100.0 33 ................................ TGTTTCAGACGAACTATGATTTGCATTAGAAGT 79952 32 100.0 35 ................................ ACCACTGCACCGAGCGCAGGCAGTGATGAAATACC 79885 32 100.0 34 ................................ GAACTTGAACAGTTGAATGTTTGGGATAACCCAG 79819 32 100.0 37 ................................ CAAATGTGTGCGTGGATCTTGAATAGGCCGCTCGAAA 79750 32 100.0 34 ................................ AATCAATCCTTTATACCCAAGCTGAAATTGTGCT 79684 32 100.0 35 ................................ ATTGATAACCTCGCCCAGCTCATGACCGAGATGAA 79617 32 100.0 35 ................................ AATAGGTGTCAACAACGAATCGAGCAGCTCAAAGC 79550 32 100.0 34 ................................ TTGTTAGATAGTTTGATATAGTTTTTTGTTCTTT 79484 32 100.0 36 ................................ TATAACTATTTTCCTTTGGGATAAAATAAATATCGT 79416 32 100.0 33 ................................ TCAAACACACTTTGCCTCTTACTAAATGGAGGG 79351 32 100.0 34 ................................ AGAGCGCGCGCTCGGTTACGAAGAACCTCATAAA 79285 32 100.0 36 ................................ TGTAGTTGTATAAACTTTTGGAAATGTACTTGGATC 79217 32 100.0 33 ................................ TTGAAGCTGTGAAAATTGCAGTCGCAAATAATG 79152 32 100.0 34 ................................ TGCTATGAATATGAATCAGAAAAAATTACGTGCT 79086 32 100.0 34 ................................ TCTTGAAAGCATCACTGAACGAGTCGCAAAGAAT 79020 32 100.0 35 ................................ AATATAATTATTATATCATTAACACTAAAATAATG 78953 32 100.0 34 ................................ TTGTTAGTCATTGGACTATTGGCTTTGAAATTCG 78887 32 100.0 35 ................................ AGATGGTCTATCACATTGTGATTACAAAGCCTACC 78820 32 100.0 34 ................................ AAGCATCGTGGAGTGAAGTTGGCCCTGGTATATC 78754 32 100.0 34 ................................ TAAAAAATATAAGGAATTGAAAAAAACAGAAAAG 78688 32 100.0 34 ................................ TAAAGAATACTTAGATAAGGTGAAACTCTATTGT 78622 32 100.0 33 ................................ CGTTTCTTTTTGGTTAGAAAGGAAATTGAATGG 78557 32 100.0 35 ................................ ATTCATACTTTAATAAATATTTGGATAGTCAAAAC 78490 32 100.0 35 ................................ GTTTAAATTAAGTTAATTTTAACATACTTTAACAC 78423 32 100.0 34 ................................ TGCAGTTATTCTGCGTGAAGCAGAAGAAGCACAG 78357 32 100.0 35 ................................ AGATTAAGACCGTAGACTTTAATGTCTCTGAATTT 78290 32 100.0 34 ................................ ATCTTTTTATCAGATATGTTATACTAACAGTAGC 78224 32 100.0 35 ................................ ATGATGATTTCAATATTATTTGACATCTGTTTGGT 78157 32 100.0 35 ................................ CATCACGAACATAGAAATTTAACTCATCAATATCT 78090 32 100.0 34 ................................ GAGGGTGGAGTGCGTTTTTGGCATAATAAAAACG 78024 32 100.0 34 ................................ TGATTCGTAAGAGAAAGAGATTCCTAAGTTATCA 77958 32 100.0 34 ................................ ATCAAAGAATTCGATATTATCTGTACGGGGTATT 77892 32 93.8 0 ................A.A............. | ========== ====== ====== ====== ================================ ===================================== ================== 43 32 99.9 34 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCCATTCGTGGTGAACTGGAATCCTATCCGCCGTTTTTAATCTAGGAGTAAATTTATGATGGTTTTAATAACTTATGATGTTAATACGGAGACTGCTGCAGGTAGGAAACGTCTTCGATATGTTGCAAAACTCTGTGTTGATTACGGTCAGCGCGTACAAAATTCCGTTTTTGAATGTTCGGTAACTCCAGCGGAGTTTGTAGAAATAAAAAATAAATTGTTGACAATCATTGACCAAGAATCTGATAGCGTCCGATTTTACTTACTTGGCAAAAATTGGCAAAATCGCGTGGAAACCCTTGGTCAAGATGATAGTTATGACCCTGATGTGGGGGTATTACTTTTATAAAAACTTGTGTGCGAATCTAGGTTGCACATCAAAACCTAGAGCATTCGCGTTTTAAAACAGAAGATAATGACAAAAATCTAGTTTTTATTAAATGAAATAGCTCAATAAATTCTTAGATTTAGTCACAAACGGTGCAACCATGCGCT # Right flank : TTTGATGAGTTTGTCTTTAAAAGTTTGAACGAGAAACTGTACCAAAAGTTAGGTTTGGATAAATAGCGAAGCAAACTAACATCTGAGGTCAGAGAGGTTCTAAACATACATATCTTAGGTAGAGTACTTGAAGTAATAAAATTCCCGATATTTCCAACAAAAAAACAGCTCAATAATAGAGTTGTTTTTTTTAAATTGTTAGCAAATCTAAATTTGGGGTTTGTGTTGTGTATATATCTCGATTTTTAAACTTCAAAATTATAGAGAGTGGTTGATAAGTAGCGCTCACCATTATCTGGGGCAAGAGCTAGAATTTTTTTACCTGTTCCTAATTTTTGGGCCACTTCAAGTGCAGCATAAATAGCTGCAGCAGAAGAAATACCTACCAGAAAACCTTCTTGTCCACCGATACGACGCCCAAGTTCAAGTGCTTGATCAGAAGTAACGCGAACAATACCATCGTAAGCTTGAGTGTCTAGTGTTTCTGGGATAAAACCAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //