Array 1 162854-161725 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAC01000003.1 Salmonella enterica subsp. enterica serovar Baildon strain 03-0685 NODE_3_length_314118_cov_4.54689, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162853 29 96.6 32 ...........................T. CCAGCGGAGAGCGAGCTATACCAGGCTCAATC 162792 29 96.6 32 ...........................T. TCCGGAAAATCTACCGTTCCAGGGCGGGGCCT 162731 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 162670 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 162609 29 100.0 32 ............................. CCGGGACTACGTTTTGGTTTCGGCGTGCTGTT 162548 29 100.0 32 ............................. TTAAATGCATCGCGATCCCTTGCAATTATAAC 162487 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 162426 29 100.0 33 ............................. GGCACGTTTACCGTTCCGGCTGGGGTTTATCGT 162364 29 100.0 32 ............................. GGCGGATCCACGATAATTTTGTCGTTATGTAT 162303 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 162242 29 100.0 32 ............................. CGCGAGAACTACGTAATCACCGCAGGTTTTCG 162181 29 100.0 32 ............................. GAGTTTGATATGTCAGCACGTCATTTCAGCCA 162120 29 100.0 32 ............................. ATAATGATTATCATCACAGGCGGACAGGGGAG 162059 29 100.0 32 ............................. AACCGCGCAATTCTGTATTACAAATTTGATTT 161998 29 100.0 32 ............................. GCGCTATTGTATATCGACCATAAACATCGGCT 161937 29 100.0 32 ............................. TCCCTGCTGGCCGTTCTGGAATTGCGTAGCGC 161876 29 100.0 32 ............................. CCGGAGCCTGACCAGGATTTTTCCGCCGTGTA 161815 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161754 29 93.1 0 A...........T................ | A [161727] ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCTGGTTTGCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGTGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTACTGGGTCTTAGCAACAAGATTTTACTGGCGGATGAGATCCATGCCTGTGATGCATGGATGTCCCGAATACTTGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCTGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCAGGTCACACAAACAGAGCTGATTTCTCAGCGGGTTGATACACGCAAAGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACATAGTGAAGAGTCGTGTCTTGAACGTATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 173204-172261 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAC01000003.1 Salmonella enterica subsp. enterica serovar Baildon strain 03-0685 NODE_3_length_314118_cov_4.54689, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173203 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 173142 29 100.0 32 ............................. CCATCCTGGCGGAACTGTATGCAGAAACAGGC 173081 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 173020 29 100.0 32 ............................. CTTCCAGTTTTTTCCCTGCCTTTTGGGCGGCG 172959 29 100.0 32 ............................. TACCTGACGCTGATCCAGTCGATCGCGCTGCT 172898 29 100.0 32 ............................. ATTTTCTTTGCGCCCGTACTCAACGTGGGAGG 172837 29 96.6 32 ............................A TCGCCCCGAGGTCGTTCACGACGTCCTCGTGC 172776 29 100.0 32 ............................. CGTTACTCCAGACAATAGAGCGCCTCACCACT 172715 29 100.0 32 ............................. CATAGGGGCCGCAGAAGTTGCCACAACCACAA 172654 29 100.0 32 ............................. GGGTCAATGTTGATGCCGGGGTGTGTTGTTAC 172593 29 100.0 32 ............................. GGAACTCATGCTTTTACCTGATGCGGCGGCAC 172532 29 96.6 32 ..........T.................. CGAGGCGGCATCAAAGACGACGAAACACCATG 172471 29 100.0 32 ............................. GATTTTCCCGCGTTGGTTGTATGCCGTGCGTG 172410 29 100.0 32 ............................. CGCGTATTAAACGGGCAGATCGAGGAAACAAC 172349 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 172288 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //