Array 1 49641-47898 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPGC01000020.1 Bacillus sp. 7504-2 contig00020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 49640 32 100.0 35 ................................ GCGCTTACTATCGCCCACTACGACATACTCGTAAC 49573 32 100.0 33 ................................ CTAACGAAGATGGAGACACATTAGTACGACCAT 49508 32 100.0 33 ................................ GGTTTGTTTTCGGTAATTAAAAAGGCGAGCGAA 49443 32 100.0 35 ................................ TCGGCTGTACTCGTCGTTTTCGGGCGCAAATGCCG 49376 32 100.0 33 ................................ TGTTTATTAAAATAACGACTCCTGGTAAAAACC 49311 32 100.0 35 ................................ CACTGGGGCTATCATCCTTGATAAACACCATTTCA 49244 32 100.0 33 ................................ GAAGGTATCATCACGGAGGGCGACCCATTTCCG 49179 32 100.0 34 ................................ CATCCGGATAAGTCGGCAATGCTTCGACGATTGC 49113 32 100.0 34 ................................ TCACTCGCTCGTTGAAATTAAGTTTTTCGCACAT 49047 32 100.0 34 ................................ TTATTGATGGAAAGTTATTAGAAGGGACATATCC 48981 32 100.0 33 ................................ AGGGAAATGCAGGAGCTGGAAAAAGTCATTTAT 48916 32 100.0 33 ................................ CTTTAATCGATGCGGGAGATATTGACTATCTAA 48851 32 100.0 33 ................................ TCTGCTAAATATGGTCTCAGTACCATCTTTTAC 48786 32 100.0 34 ................................ GATCAACTGATAATCATAGCGTTAAAGGTCGTTT 48720 32 100.0 35 ................................ CCCATCAATCATGCCCTGTCCAGTTGATGATGCGT 48653 32 100.0 34 ................................ TATCCCCTCCTTGAAATCGATTTTTAATAGTATG 48587 32 100.0 34 ................................ TTTTAGTATGATGTCTGCCGGTACGCCCATAATT 48521 32 100.0 34 ................................ TCCACCTAACCAAACCATGAGTCCACAAAACAAC 48455 32 100.0 32 ................................ GTACAAGTCCCAATTTTTAATTTCTATATTTC 48391 32 100.0 33 ................................ AAGAGAGATTAGGTCATAATAGCATCAAAACAA 48326 32 100.0 34 ................................ CGGAGGGTGCGATCGGTTAATCCTGTCTTCACGC 48260 32 100.0 36 ................................ ATCAAGTAATCCCATGTCTTATCAAAAGTAGATATA 48192 32 100.0 33 ................................ CCTTCGCATCGAAGTGGGAAAGAACAGTAAAGG 48127 32 100.0 34 ................................ ACAAATACTCTTCAGATTTATTGAAAACAAAGGT 48061 32 100.0 35 ................................ ATAATCTATTTGAGCATTAAGTTTTAAACCAGAAT 47994 32 100.0 33 ................................ AAGAAGGAGAAAGCAAAAAAATGAGAATGTTTA 47929 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 27 32 100.0 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ACCTTATATAGGTGCGTGGATTGAAATCGTTGGGTCTATTAAGGCAAGAGCTCCAGAAGGA # Right flank : TGTGACGGTCTACCTAAAGACGAAATGGAAATGATTGTCGAACCCTACATAAACTTCACACCAAAGGAACTATAAAATAACACAGGAGATGACAATGATTGTAGCGAAGATAGTAATATAATAAAATATGACTTTCCAGGTGGTGAGGATTGTGAAAAAAATTTTGACATCAAAGAAGGTTGTATTTGGGGGCTTGTTGTTCTTGCTTATTGGTATTTTGGTTTTCAGCGAAATTAGCAGTCGTTTTTCCATGAAGGGGCAAGAGCCAACTGATGTAGGCTATGTTGTTTTTCACAATGGTACGAAATATTTCGTTAAAGGAGAAAATATTACAGCTTCTGACTTGGAAAATTTTTCTGATGAAGATGTTACGATGTTTTCAAAAAAGTTTGAGGAAATAGCGATATTACTAGATGATGGAATGAAACTTTTAGGGACAGGAATTAAAAGTGGTGATCTGGTCGCTATTTGGTATGAAGAAGTTTTTGAATCGTACCCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10758-8734 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPGC01000021.1 Bacillus sp. 7504-2 contig00021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 10757 32 100.0 33 ................................ CTAATTGAAAAACCGCTAATCCATCTAACACCA 10692 32 100.0 35 ................................ TAGACCATCCTAGTAAATACGCAGGATGAGGTAAG 10625 32 100.0 34 ................................ AAAACAAAAGATGGAAGAAAATGAGCCAGCTTAC 10559 32 100.0 35 ................................ CCTTTTTCAGCAATTAAGGACAATTTGTTGATAGC 10492 32 100.0 33 ................................ TTTTAAGCATTGCTGACATAGACCATTATCTCT 10427 32 100.0 37 ................................ TTAAAGGCTTTGATTAAACAGAGTATGGATGAAGCGA 10358 32 100.0 34 ................................ TCACCTCGCTTAATTTGTTTTACAAACTCATAAT 10292 32 100.0 33 ................................ AGAAACATCGAGAACGAAAAAAGATGATTGAGA 10227 32 100.0 34 ................................ ATTTTTAATTCCACCATTAGGATATAGATGATAA 10161 32 100.0 34 ................................ CGTCAATTTCAAATCGTGCCATCTATCGTCATCC 10095 32 100.0 34 ................................ ACTAAATGCAACTTTGAACGGTACTACAACCGAG 10029 32 100.0 34 ................................ TAATTGCGTTTTGTTGGCGATAAAATTGTTCTCC 9963 32 100.0 34 ................................ CTAATTCCCTCACAATTACACCTTTTTCATCAAT 9897 32 100.0 36 ................................ AGCTCCAATAATGTTTTCTAACATAAGTACCTCCTT 9829 32 100.0 34 ................................ TTAAATTAGTGCTGCTACCCACATATGATTTTTG 9763 32 100.0 34 ................................ GTTGATCCATGGCCATTATAAAAGCTGTGGATGC 9697 32 100.0 35 ................................ AGTCGTTCCGCGATTTTGTCGCGATAGGGCACCTC 9630 32 100.0 34 ................................ ATCAGAATTGCTATCTGATAGATGGAGCAACCAT 9564 32 100.0 35 ................................ GTAACCTCGGATAAATACTTTATGACATCTCGGTT 9497 32 100.0 36 ................................ AAGACGGTTTAATGCCACTTCTAGGCGCATAAGATT 9429 32 100.0 35 ................................ CCTAGTTATACGCCTTTGGAAATAGAACAATGGCC 9362 32 100.0 32 ................................ GTCAGGGCGAAGTTCAAGCTGTAGCTGGTCCG 9298 32 78.1 36 .......TC.AC..GA...T............ ATCAACTTTCAAATGAACTTAATCACTAACAATGCA 9230 32 78.1 36 .......TC.AC..GA...T............ AAGCAGGGCGACATCGTAATCACGACAGTGAATGAC 9162 32 78.1 34 .......TC.AC..GA...T............ ATAATCTCAATGATTTCCTTGATGTAAGGCTCGT 9096 32 78.1 36 .......TC.AC..GA...T............ CAAGGACTCACTCACATCATGGTGGAGTGTAATTAC 9028 32 78.1 33 .......TC.AC..GA...T............ CGACGAATTAGACTACCAAGTACAGTTACGTAT 8963 32 78.1 35 .......TC.AC..GA...T............ CTTCTAGGTCGCTGTCCGTGCCTGTTTCGTATTTC 8896 32 78.1 33 .......TC.AC..GA...T............ AAAAGTCCGCAGGGAAACCTATGTTGGCTCCTG 8831 32 96.9 34 ..........A..................... CGTTATGTAGCAAGACGTAGGTAAATCATTTTAA 8765 32 81.2 0 .......TC.AC..GA................ | ========== ====== ====== ====== ================================ ===================================== ================== 31 32 94.3 34 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : TTATCTTGATAGATAGCAAGGATATTATAGTGGACTATAAATAAATTTAGGCTTTTATTCTTTTTAACTGTTGCTATGTAGGCATGTGGGAGGCGTTCTTTCTTAAATGAAGTAAATATAAAGCTCTGGATCACTATTGAAGCGATGCTATGTAGTTGAGACACACTCTATATGAGTTTTTGGGTTGAAATTAAGACTAAGATCAGAGGAAGGCTCGAAAGTAAAAACAGTACATATATGTTTGCTCTTATTAAAAAATAATGTAGGCATTTTTGCTGAAATAAGAGAAGTGTTTTAGATTTAAACTCTTGAAATTTATGTTAAAATTTTTAGTGCGAATGTGAAGCGCACATGATTTCCCTAGGGGATTCGCACCTTAAAATAGGGCTGAAATCTTCTCCTTCTTGTATTTTTTTACAAATATTTGTTGGAAAACAACAAAAATAGCATTTTCACAACATAAAAAAGTGTAATTTTACTTTTTTTGTTTAAAAATCGCT # Right flank : TCCCGTTTGATGTTCGGAGCGATTGCGAAGGGGAACGGCTCTCACTCTGTCACTACCCTATTTGGAGTATGTGGAGCAAAGTTTTCACATAAAGATGTATCGGAGAAATAAGTGTTATGTGACAAATTAAAATCTCATCAATGAAATTAAAAACCATTCAACATTAAATTATAAATGTCATAATTTGTTTGGAATTATTAGAGAATAATGTAAAAATTTCGCTATAATGAAGAGGTGATGGTTGTAAAAATATGGAGGTGTACCATGCAGTATATTGCTCATATTCGTGAAAGTGATAGAGAAATTCAAACTGTGGAAGAACACTTGTTAGAAGTAAAGGAATTGGCAGAATCCTATGGAGAAAAAATAGGCGTCAAGCATATCGCTGGTTTGGCAGGGATGCTCCATGATTTTGGAAAGTTCACAAATGAGTTTCGGACTTATATTCTAGAAGCAGTAAATAATCCTGAAGCACCGCCAAAACGGGGGAGTGTAGATCA # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTACATGAGTGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 20800-19306 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPGC01000021.1 Bacillus sp. 7504-2 contig00021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 20799 32 100.0 35 ................................ TAAATCATAAATTCCTGCGCTCATATTAGTCTTAC 20732 32 100.0 36 ................................ TATTATATGTTTAGATGAATCGCATTTAGATATAAG 20664 32 100.0 33 ................................ TTATCCATCGCATTTCTAAAACCCCCTCTGACA 20599 32 100.0 35 ................................ ACGAAGGAAATGCCGTTATGGTAAAAGTAGATGGC 20532 32 100.0 35 ................................ CCCGCACCCGCACCAGCTACAAGCAATACAGGCCC 20465 32 100.0 34 ................................ GGATTAGTTGGTTGTTAGGGGAGAAATTATCTCC 20399 32 100.0 35 ................................ AAGGAGAAATGGCAGAAGGGCGTAAATCCATTGTT 20332 32 100.0 33 ................................ TGAGACGTGCGCTAAAACTAAATAAATTGTTGG 20267 32 100.0 33 ................................ ATTAAGCGGTTGGATGCAGTGGCGAAGGCAGTT 20202 32 100.0 33 ................................ TTCAAACCGTAATTAGAATGAAATTCTTTATGA 20137 32 100.0 35 ................................ GAATGCCTGCCGTTAACCCACTAATGTCAGCGCCA 20070 32 100.0 33 ................................ ATTTTGCTTATCTCCTTTCATACCCCGCCGTAA 20005 32 100.0 34 ................................ TTCTCTTTTGGAAACAATATAACCATCGGCTGAC 19939 32 100.0 34 ................................ CAATACGGTTTTTGGCGCCTTGTAATCGGTCGCA 19873 32 100.0 34 ................................ CGCTTGCATCATTTCGAATACAAGGTCGAGCATT 19807 32 100.0 37 ................................ ATGTTGTAGACGTTCGTGCCAAGTCCTACAGGCTCAC 19738 32 100.0 34 ................................ CCATAAGCTCTAATGTCTCTTGTGGAATGTATTT 19672 32 100.0 35 ................................ GCATCGTTGAAGCCAAAAAGAGCACGGGGGATATT 19605 32 100.0 35 ................................ TATTTGTAACGCCGTTAATCGACGACACAACCGCA 19538 32 100.0 35 ................................ CGTGCTTGTGTAGACCACATTACGAACATGCAAAA 19471 32 100.0 33 ................................ CCCAAATCTCATACTTCCTATATGTTGGATCAA 19406 32 100.0 37 ................................ ATATCAGGATCTAAAGTATTGTCTTTAGCTTCGGGTG 19337 32 96.9 0 ............A................... | ========== ====== ====== ====== ================================ ===================================== ================== 23 32 99.9 34 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : AAGCACAAGTCATACTTGAACAGTTAAGGAAAATCTAGTAAAAGAGAGAATCTTGGCGACAAAAAGGTATTGGTGCAAGTTTGCTAATCGTATTCTTGAGTTTGGAATATTTAAGTTGAAATGTAAGATTTTTGCTATAATTAAGAGGAAGATTGCATAATCTCATTGCTGCAATTCAAAGGAGCAGTCAGTACAGCATGGAAAAGTGTAAAATTCAATGCTGTGCAGTTTTTGTTCTCACATTTGTTAATAAAGAAATTCTCTGAAAATATAATATTGATAATTTCACAAAATAAAGTTGGGAAGCTCTCTCACCACATTATTTTTTTAGTGCGAATGTGAAGCGCACATGATTTCCCTGGGGGATTCGCACCTCGAATAAGGGTGTAATCCTTCTTGTTTTGAATTATTTTTTATAAAAATTTCTTTGGAAAACAAGAAAAATAGCATTTTTCTTAGCTAAGAAAGTGTAAATTTACTTTTTTCGTTTAAAAATCGCT # Right flank : AGTTAAGATCAGCTAATGACATTGGAAACTCATAAAGTTGGTATGTCAACACTAAACTAGACAACTTTTTTAAGATGTTCAAGTTTGTAATCAATCGGACTTACATAACCAAGTGTCCCATGAATTCGTATGTGATTGAACCAGTGAACATAGTCATGTAATTCCCTTGTTAATTCTTCTAAACTATCAAAATGTTTATCTTTCACAAACTCTGTTTTGATGATTTTAAACGTTGTTTCAGCCACCGCATTGTCATACGGGGCAGCCCTTCATGCTTAAAGATCGTTGAATATGAAACGTCTCTAAAGCATCGTCAATCAGCTTGTTTTTAAACTCATTTTCACGATCCGTATGGAAAAGCTTTATTTTATGTAGATCAACCTTAATGGAGGCGAATGCACGATAAACCAGTAAGGCATCTTTGTTTGGGCGTGTACTGAAGCCTACGATTTCACAATTAAAGAGATCAACAAATACACATACGTACTGCCATTTTTTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 36285-34471 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPGC01000067.1 Bacillus sp. 7504-2 contig00067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 36284 32 100.0 34 ................................ TATCGTTCTTTATATAAGAAATTTTTAGAGAATC 36218 32 100.0 33 ................................ ATTATACCTAAAACAAAGAAACCAAATAATACT 36153 32 100.0 35 ................................ TTCTCCTTCTTCCCAAGCAACATGACGGATTACAA 36086 32 100.0 34 ................................ GCTAAGTTCCATTAATAATTCAATAATTGCGAGT 36020 32 100.0 35 ................................ CCGTCAAATGCCCCGAATTTTTTAAGATTAATGCA 35953 32 100.0 34 ................................ TTCGAAACTAGCTTTCCGGTAATCGTACAAGTTG 35887 32 100.0 33 ................................ CAACTAAATCAACTGTTTTTTTTACATCTACAT 35822 32 100.0 33 ................................ TTTAGATAAAGAAATGGAAAGAGATAATTTTAG 35757 32 100.0 36 ................................ AAAAGCAGTGCGGTATTTATTAAGTCCTAAAATAAT 35689 32 100.0 33 ................................ AAGGCGAAAAGGGGGCGAAGTAGGATGGCGAAG 35624 32 100.0 34 ................................ TTGATCTATACTGTTACGTAGAACTAATCACGCC 35558 32 100.0 34 ................................ TTCAGCCATTTCATTTGCTCCTTTCAAAAAAAGG 35492 32 100.0 33 ................................ TTGCATTCCAGGTTGAACTTGCAGAGCTGGCCA 35427 32 100.0 33 ................................ AGCAAAAGCTGGATCAAATCGATGCGGATATCG 35362 32 100.0 33 ................................ TATCCCGCCGCAATCGCCCGACGGGTGGCGTTA 35297 32 100.0 32 ................................ ATTGCGACCAAAATTTATATGTGCAGTTATCA 35233 32 100.0 36 ................................ TCCATCATCTAACCGCATAAAAGCATCAAAATCACA 35165 32 100.0 34 ................................ TCAGCAAGTAACTGCTATCAATGAACCTGGTCTA 35099 32 100.0 35 ................................ TGAAGCTATACCAGAAATTATCGAAATTACTATAC 35032 32 100.0 33 ................................ CTCTAGGATGATTTTGCGTTTACGTTTAATTGT 34967 32 100.0 34 ................................ ACTAATAGAGTAGGTGTTACCAAGCAATGCTCCG 34901 32 100.0 34 ................................ CACAATCAGTGATGGGAACAGGGAAAAAAAATAC 34835 32 100.0 34 ................................ ATCTAAAGGGCCCCAAGTCTTAAACTCCTCCACA 34769 32 96.9 34 ..................A............. GATGCTAACGAACAATTAGCAAAAGATGCATTAA 34703 32 96.9 35 ..................A............. CTTAAGTAAATCATAATCCCTCTGCAATAATTTTG 34636 32 100.0 35 ................................ AACATTGCTGCAGTCCTCAATACGTTTTTTACAAG 34569 32 100.0 34 ................................ TTTGTTTGTTTATTTAGTTCTCCAGGATACTCAA 34503 32 90.6 0 .............C.........A......T. | A [34476] ========== ====== ====== ====== ================================ ==================================== ================== 28 32 99.4 34 GTCACACTCTATATGAGTGTGTGGATTGAAAT # Left flank : AGATATTAGCAAATAAGACAGTTGCAATCTTCATGATTTCTAAATGCGAGCAAGCAAAGTCAAGATTGCAATTATAACAAACGAAAGTGGAACAGAGAATCCCTCTGCTATTCGCTATTCCAAGGTAGCCTAAACAGAAAAACTCAGCATATTCTGGTGTAAATTCGATTTACTTATAATATAACTGCTACCTGAAACCCTTATTATTATCTGATATAATGTTAAAAAAGGATTTGTTTTCTCAATCCTCACTTCTTTACCTAATAACAGCTAAACTTTTTACATAAAGAGTTTTTATATTAAAACACTTAGAATAAACTGTAATAATTCAGTGCGAATGTGAAGCGCACATGATTTTCCTAGGGGATTCGCACCTTGAAAATAGCAGCTATTTCTTTTAACCGCATGGTTTTATTCCATTTTTTACCTATATAACCACAAAAATAGCATTTTCCATACGACAATAAGTGTAATTTTACTTTTTTTGTTTAAAAATCGCT # Right flank : CTTCCTGCAAAAAAAGATAAACGGGTGTCCAATATTTTTTGGACACCCGCTTATCTTTTTAATTTAATTGCATGGTGGTTATACAAGTCCCATCATTCTCAAAAGTGGATAGCTCGGATTCGACTGTCTTGCCATCGTAAGAAATCGTAACAGTGTACGTTTTTTCCCGTGGAAGCCATAAATCAAAAAATCCATTTGGAAGGGACGTTATTTTTTCATCTATCATCACTTTTCCATCTTCGTCTTCAATATAGACATCAAATTCTTTTTCGACCAGTTCTCCTTGACAACCTGTCAAGCTATGATTTGTTCAAGGATGGGTCTCATGAATATATGGAGCGATCGATACAAAAAACTCCTCTTCCGGTAGCTCATACACTGTCTCTTCATCAGTTTCTTCATTCGTGACAATTAATTGTGTAGCAGTAATAGAGGCCGTTTCACCTTCAACACTTCCAGTACTGTACTCATTCACCAATTTTTTAATGTCTACCGAATCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACTCTATATGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTCTCACTCTATTTGAGTGAGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //