Array 1 94555-96046 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLRU01000009.1 Salmonella enterica strain CFSAN044884 CFSAN044884_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94555 29 100.0 32 ............................. CCTGCGTATATCTGGACGGAAACGAACTGGTT 94616 29 100.0 32 ............................. ACACCCCGACTGTAGATGAAATTCCCGTCGTT 94677 29 100.0 32 ............................. CTTACCGCAGAACCGTACATGCGGCTCATTTC 94738 29 100.0 32 ............................. GTAATTCCTCGCCGTAAACGTAACGGAAATAC 94799 29 100.0 32 ............................. ATCAACGATGCCAAACTCGGTGGCGATTGGCA 94860 29 100.0 32 ............................. GCCGCGAAATCGCAGCGCCGCATGACGACTCT 94921 29 100.0 32 ............................. TAATATTCTTATCCAATATTTTATTGCTTGAG 94982 29 100.0 32 ............................. TAGATAGTGAACTTTATGAAGAAGTAATGAAG 95043 29 100.0 32 ............................. GGGATGTCACAATGATAAGGCGTTTTCCGTTA 95104 29 100.0 32 ............................. GCGGATAATTCAACAGCGTTGGGCTATAGCAC 95165 29 100.0 32 ............................. GTTGAAATCTTGGCCGCAGCGGAGGAAATGGG 95226 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 95287 29 100.0 32 ............................. AAATTTGGCTTGATGCCGCAAACAAAGAACTT 95348 29 100.0 32 ............................. AACTGCTTAAATCAAAAGGACTTCACTAATGA 95409 29 100.0 32 ............................. CCCGTGTGCCCTTTACCCTTGCCGTAGTCCAA 95470 29 100.0 32 ............................. ACATTGATTGATACGTGTATCAATCGCTGGTC 95531 29 100.0 32 ............................. TCGCGGATTTTCTTAAACGCAGCAATAATATT 95592 29 100.0 32 ............................. AGTTCAGTCCAGTTAACGCTGAACGGCGAACC 95653 29 100.0 32 ............................. ATCGTTGTCGTTCGTGTTGCTGAGGGTGCGAA 95714 29 100.0 32 ............................. GGGCCCCCACGATTTAGCCTTTGACAATTATA 95775 29 100.0 32 ............................. GAAAGCTACGACTTACCAGACTGAAGCCATAA 95836 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 95897 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 95958 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 96019 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTAGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112303-113798 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLRU01000009.1 Salmonella enterica strain CFSAN044884 CFSAN044884_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112303 29 100.0 32 ............................. TTACTTGATGTTGCCATAGAAGAATCTGACCC 112364 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 112425 29 100.0 32 ............................. TCATCCGTGTTGACAATAATACTGGTTATACC 112486 29 100.0 32 ............................. TACCCGCCTTTTATTTCGCTATATCAAAGGGG 112547 29 100.0 32 ............................. GCCGCGATTTGCTGCGCCTCCGGTACGGCAAC 112608 29 100.0 32 ............................. AAAATCACCAGATCCGGGCGCAAGGGCGCCGC 112669 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 112730 29 100.0 32 ............................. TTCTTTACAAAGAAGAGGGCTACCCGGTTGCG 112791 29 100.0 32 ............................. TTGTGACTTTGATAGTGATTGAAAGCACCTGT 112852 29 100.0 32 ............................. TGAGTTGCGCTTCATACGCTCTTTTTGCTCTG 112913 29 100.0 32 ............................. ATGCGTAGTCCAGCAGCTGCGCGGCGGCGTTT 112974 29 100.0 32 ............................. CCCATCCCCAGAATTTACCGATATGCTCCACA 113035 29 100.0 33 ............................. GGCCTAGATGATCCGTTGGCGTGGAACGTTAGC 113097 29 100.0 32 ............................. CAACTGCGACACATACCTCTCACACCATCACT 113158 29 100.0 32 ............................. AAAAAAGGGAAAAAGGGGGGGCTGTTTCTCCT 113219 29 100.0 32 ............................. CCATCCGAAAAAGCCGCGTTTACGCCGATGTT 113280 29 100.0 32 ............................. GTTTATAAAAAACACTCGCAAACAAGATGATT 113341 29 100.0 32 ............................. CTCTCAAATGCCTGCCACATCACGCGCGACGC 113402 29 100.0 32 ............................. CTGGGAACCCACTTCATCGGAGCGGCTTCACC 113463 29 100.0 33 ............................. CCGTATTGAGGCGCTATTCCGTGCTGTGCCGCC 113525 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 113586 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 113647 29 100.0 32 ............................. TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 113708 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 113769 29 100.0 0 ............................. | A [113796] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //