Array 1 96008-96358 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABENY010000012.1 Listeria monocytogenes strain 539 NODE_12_length_96358_cov_22.806279, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ======================================= ================== 96008 39 92.3 39 ..................G........A.......A... TAATTCTTCAAGGCTAGTACATCCATCAAACATGTAAGC 96086 39 100.0 39 ....................................... AAGCTCTCCAAGGCCAGTACAATTTTCAAACATGGCCTG 96164 39 94.9 39 ...........................A..G........ CAGCTTCTCAAGTGCTCTACAGGCATTAAACATGGCCTG 96242 39 100.0 39 ....................................... AAGCTCTTCAAGACTATTACAGCCAACAAACGTGCCATA 96320 39 89.7 0 .........A..G.....G........A........... | ========== ====== ====== ====== ======================================= ======================================= ================== 5 39 95.4 39 CATAGTAGTTACTGAACTCGTATCAAAGTTACTTACATC # Left flank : GCTGGAATAATCACCGTGTAGTTTTCTACCCATTTTGCGTAGATAGTTGCTGAAACAGTTGCTGGTAAAGAAAAATCAAACTTATTAGTGAAATTTTGATCAAGATACCACCCATCAAAATAATGTCCTTCTTTTACAGGAAGCATTTCTTCCCAGTACTCCCCAGAAACTTTATTTTGTACTTTTTGTTCTTCCATTTCTTCAAACTGCCCACCCATCGCATCCATTGTTAGGGAAAGGAAGATACCTTTTCTATAGCCAGTAGGTTCCCTTTGGTATTCATGATACATCTGTAGTTCCTTGTAATTCGAAAACTGTACCCAATTCTTTTCGTCATACCATCTTGTATTTGCTAGGCCATCAAAAGCTCTTAAATTGTGACTGGCAAACAAGTAGGTTAAGGCGGTGGTTCCAGTAAACATACCTGTCATAGTCTTTGGGGTAGTAAAATTATCCAGATATAAAGATTTTAACGCTGTACAATTTTGAAACATGTAAGC # Right flank : | # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATAGTAGTTACTGAACTCGTATCAAAGTTACTTACATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 374-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABENY010000042.1 Listeria monocytogenes strain 539 NODE_42_length_449_cov_19.869565, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================== ================== 373 32 90.6 45 .....G..A..G.................... CAGTTCCGTTACTACTATGAGGGACATGTTTGGTAGTAGTGGAAA 296 32 87.5 46 A...G......G........C........... CAGTTCAGTAACTACTATGCAGGCCATGTTTTATGGTTGTACTAGC A [288] 217 32 100.0 46 ................................ CAATTCAGTGACTAACATGAGCTACATGTTTTACAATTGCGCTGGT 139 32 100.0 46 ................................ CAGTTCCGTTACTACTATGTATGGCACGTTTGTTGGCTGTAATAGT 61 32 96.9 0 .......................C........ | ========== ====== ====== ====== ================================ ============================================== ================== 5 32 95.0 46 CTTGAAGAGCTTGATGTAAGTAATTTTGATAC # Left flank : TACGGAGCTTGATGTGAGTGGTCTTGATACGAGTGCTGTAACTAATATGAATTGTATGTTTAACTACTGTAGCGT # Right flank : CGAGTTCAGTAACTACTATGCAGGCCATGT # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAGAGCTTGATGTAAGTAATTTTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.75%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //