Array 1 984618-985848 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010892.1 Pseudomonas sp. MRSN12121 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 984618 28 100.0 32 ............................ TGCTGGACCTGATCAAGATGCCGCCTCGCCCG 984678 28 100.0 32 ............................ TGAATGGCAAGCAGGCAGCTATCAGGGCTGGA 984738 28 100.0 32 ............................ TCGTTCTATCACCCGGATGCCGCCAGCAACCC 984798 28 100.0 32 ............................ GCAATGAGCGGTGCCAGCTTCGACTTCAGCGA 984858 28 100.0 32 ............................ AATCAGGCCGACGCTGAAGCCGCACGCAAGGC 984918 28 100.0 33 ............................ TGGCAAAGCGCGTCAAGGTGAACGGAGTCTGGT 984979 28 100.0 32 ............................ GCACAGTCAACCAGGTCAGCGGTGAATGAACG 985039 28 100.0 32 ............................ AACTCCCGTCCGATGTAATCGGCAATCTCGCG 985099 28 100.0 32 ............................ TTATCGGTACGGGTGGTGATGAAAACGAATGA 985159 28 100.0 32 ............................ AGGACCAGGTCCACGTCGAACAGATCGTTGTC 985219 28 100.0 32 ............................ TGCCAGACCACTTTCGAGCGAGGCCTGCGCCG 985279 28 100.0 32 ............................ TGGGCAGGAAAGGGCCTTGGACCACTGTTGAC 985339 28 100.0 32 ............................ GGATCCGTTTTACTTGGAACGGTCAGCGTCGA 985399 28 100.0 32 ............................ AATCCCAAGCCGCTGGAGAAGGAGGTTTTTGG 985459 28 100.0 32 ............................ GACAACTACACGCAGATCCCCTGGCGCGGCAA 985519 28 100.0 32 ............................ AGGCTTGGCATCCGGCGGCGCCCGCAATACGA 985579 28 100.0 32 ............................ AGGAAAGCATCGCATTTGATGAACGCCTACAG 985639 28 100.0 32 ............................ CGCATGAAGCCGGAGAAGTTCGAACAGTTCTG 985699 28 100.0 32 ............................ TTGAAGTTTTGGATTTTCCGGGCTGGAGCGGG 985759 28 100.0 32 ............................ AGAACTTGTTGATGTGCGAGTTCGTCGACGAG 985819 28 96.4 0 ........................T... | G,G [985841,985843] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.8 32 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AGGAGAGGTGGTCTTATTGCAGTCATTGGGGGCCACTGCGGCCAGTACGATGGGCAATAATTCGTTGTTTTCGGTGCGTGAAGGCATCAGCGCCGAAGAAGCGTTGCTACACGTTTCCATCCTGCTCAAGGCCGCCGAAGAGGTCTCCGACGAAATCACCGAGCGCGCCAGCGGCGTGGAGCGAGGGCTGATCTGGTCGATGATTCATTCGGTGGAGATGGCGCGGGGTGTGGTGGACGCCTTGCTCGACGGCAATCGCCCCTGATCGACAAGCGCCGCCGAAACCCTCGCGCCTCGTTGCTCGCCGGGCCAGACAAAACAGCCTAACCGCTATAGTCTGAGCGCCGGCGAGCCGCTCCTTAACGCTGACCCTTTTTTTCGAGCAGGCTGCAACGCCATGTAAAATCAAGCATTTACAGCGGTCGCCACAAAAGAGGGTGAAATACGCTAATCGGCAGGATTTCTTTTTGAAATCATGAGGATGTAAAGATCTCTGGCTA # Right flank : ACGCATTGAAGGTATGGCCCAACTCGCTTTAACGACTGGCGTTAATGGTCGGTAGAGTGGGAACTCGCCTCGATCCCGGTCGGGGCGTTTTTTTGTCTGTAGACCCGTAAGAGGCGAGCTACCAAAACAGCCACGTCATCAGAGTTCAGAATCGTCTTACAGCCTTGCCTTTCGCCACTTGCTAGGTTCGGGGAGTTGCAAAGAATCAGAGCCTCCCTCACGGATCAGTTAACGCAAGGATGATAAATGCTCCCCTCTGCTCGCCTGGGCGACAAACACATCTGCCCACTTCCCGGTCATGGCACCACCCCGATTACCTCCGCTTCCGGTGACATAAACATCAACTTCATGGGTGCCGCCCGAGTCGGTGACATCTGCGGTTGTGGTGCGGTTATTACCACGGGGTTTCCCTCGATCATCTTGAACGGGCGCCCAATGGCTCACCTGGGTAGCCCTACCAGTCACGGCGGAACGATCATCTCGGGCAGCCTCGATACCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5618291-5618772 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010892.1 Pseudomonas sp. MRSN12121 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5618291 28 100.0 32 ............................ AGGGCCAGGAGGCGCCCGGGGTGGCCAGTGAA 5618351 28 100.0 32 ............................ AACCCCGACGGCCCCGGCCAGAAGTGGGTGAT 5618411 28 100.0 33 ............................ CGAGAACAATGACCCGGTGATCATTATCGAACC 5618472 28 100.0 32 ............................ GGGCGCAGCGGGAAATCCTGCCGCTCGATCTA 5618532 28 92.9 32 ............G.......T....... TTGTGGGTGTACTTGCCGGCCAGCGCTTCGTC 5618592 28 78.6 3 ............G........C..CCGG TGA GG [5618613] Deletion [5618623] 5618625 28 92.9 32 ............G...A........... AGTTCGCCGTCGCGCAGGACGGAGGTCTCTTT 5618685 28 89.3 32 ............G.....CA........ AGATCCCCGTCCGCGTCATACAGGCCGAGTTC 5618745 28 75.0 0 ...........C....C......CTCCC | ========== ====== ====== ====== ============================ ================================= ================== 9 28 92.1 29 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : GGCGCTCGCCAGCCTGCTGGCGCTGAACTGGCTGAGCGGCATGCGCGATCACGTGCAGGTGGGCAAGCCAAGCCCGGTGCCCGCCAACGTGCGCTACCGCCACGTCAGCCGGGTCCAGGTGGACAGCAACCCCGAACGCCTGCGCCGCCGCTTGATCAAGCGCCATGCCCTGAGCGAAGCCCAGGCGCGCGAACGCATCCCCGACACCGCCGCCAAGCACTGCAACCTGCCCTTCGCGCAACTGCGCAGCCACGGCAGCGGCCAGGTCTTTCGCCTGTTCATCCGCCACGGCCCCTTGCTCGACACCCCGCAACCCGGCCGCTTCGGCAGCTATGGCTTGAGCAGCACGGCAACCGTCCCCTGGTTCTGACCCTCTTTTCCCCCGACCGAAATGCCCCACGTAAAATCAAGGACTTACGTGGGGTCTCAAAAAAAGCCTGAAAACCTGGTTTTGGGGTAGTTTTTCTTCGGGAACAAATGGTTAGGGAGTTTATGGTCGA # Right flank : CTACCCTATAGAAAGCCCCCCAATCCCCAACCAGAATTTTCATACTGACCCCCGCACTTTATTTCGTTTGCGACCCCACCTCGCTCCTGGCTTAGATAGCTCCCACGTTCCAGCTAGCCAGAGCCTTTAGTCCATGAGCAGCGAAAGCATCAGCCAGTCGATTTCCATCGTGCATCCCATCCGCCTGAGCCATGGCTGCAATGCCGAGGTGTGGGACGAGGATGGCAGGCGTTATATCGATTTTGTCGGGGGGATTGGCGTGCTCAACCTGGGGCATTGCCATCCGCGGGTGGTGGCGGCGATTCAACAGCAGGCCACCCGGCTGACTCACTATGCGTTCAACGCGGCGCCCCATGGGCCTTACGTGGAATTCATGGAGCGGCTGGCGCGGTTCGTGCCGCTGGGGTATCCGGTCAGTGGCATGCTCACCAACAGCGGCGCGGAGGCGGCGGAGAATGCCTTGAAGATCGTCCGCGGCGCCACCGGGCGCACGGCGGTGA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.35, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //