Array 1 38355-32552 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060827.1 Streptomyces sp. CRPJ-33 plasmid unnamed3 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 38354 29 100.0 32 ............................. TCGGCGGGCGGCGGCCCGGGCCAGAAGGTGAG 38293 29 100.0 32 ............................. GTCGGGCCACAACTCTTCCCGGACGGGTCCCG 38232 29 100.0 32 ............................. CGGGGGCCCTTTTCCCGGATCAGGCGATTGAT 38171 29 100.0 32 ............................. CAGGCGTGCGGGCGGCGCTGCGCCTGGTGGGC 38110 29 100.0 32 ............................. CGCGAGGGCCGCCCCGTCGGCCGGTTCCGCAC 38049 29 100.0 32 ............................. AACCGAGCCGTTGGAGCGCCACCCGCGTCGGC 37988 29 100.0 32 ............................. CGGGCGGGCAACATCATGTGGGCGACCTCCAT 37927 29 100.0 32 ............................. GCCCGCGGCTTGGCGCTCATGGCCGAGGCCGC 37866 29 100.0 32 ............................. AACCGAGCCGTTGGAGCGCCACCCGCGTCGGC 37805 29 96.6 32 ............A................ TCCGGCGGCGGACCGGCCGTGGCCGTACCGCC 37744 29 96.6 18 ............................C GCTCGGCGTGTGGATTCT Deletion [37698] 37697 29 96.6 32 ............................A ATGCGGGTGCCGGGCGGGGGCACGAGGCCGAA 37636 29 93.1 32 .............A......A........ CCGCGCGGTCGGCGGCAGTTGAGGCCGCCCGC 37575 29 93.1 32 ............AA............... TACTGCCTGGCACATCGCCAGCTCGTGGTGCC 37514 29 100.0 32 ............................. TGGTTGTGGATGTTGTGGCCGCCCTTGTTGTG 37453 29 100.0 32 ............................. GCCGTCTACAACGTGCTGGCGATGCACGTGAA 37392 29 100.0 32 ............................. TCGACGTTGGCCCGGCCGAACACGGTTGACGC 37331 29 100.0 32 ............................. TCGTGCGGCCAGTCCGCGAGGTGGAGCCGCAG 37270 29 96.6 33 ............................C GCCGCCGCCGGCCTCCGGGGCGGCACCGGCCGC 37208 29 100.0 32 ............................. CGCCTGTCGATCTCGCCGACCCAGCCGTTCAG 37147 29 100.0 32 ............................. CCGGCCTGTACCTCGGGGGACGCGAACGCCGC 37086 29 100.0 32 ............................. TCCGCTACGTCGTCGTCAGCCCGGAGTTCTCC 37025 29 96.6 32 ................T............ TCCGCTACGTCGTCGTCAGCCCGGAGTTCTCC 36964 29 96.6 32 ................T............ AAACAACAGAGTTTCCCAACCCCCTCCGACCT 36903 29 100.0 32 ............................. AAGTCGTTGCGGAACATTCTGCTGGGCCCGCG 36842 29 100.0 32 ............................. GCGGAGATCTGTCACACCGCCGGCGTGCTCGC 36781 29 93.1 32 ..................A..A....... GCCCGCGACAGGTGGGTCCGGCGCTCCGCGGA 36720 29 79.3 31 ............AA........C..CAA. GCAGAGTTTGTTGTCCGCGGACAACAAGCAC 36660 29 79.3 31 .C......G...AA.....A........C ACCAGCACGTGGGCTGGCAGACGCTGGCGTT 36600 29 93.1 32 ......T.............A........ CCATGCTGATGAGTGCGGCGATGCCATCGCCC 36539 29 96.6 32 .......T..................... CGACCGCCGTGCGAGCGGTCCTCACCGAACTC A [36522] 36477 29 100.0 32 ............................. TCCGCAGCACTGACATTTCTGTCCTACCCTGG 36416 29 100.0 32 ............................. TCGGTGTCGGCCATCGCGGTCGTCTCGACCAC 36355 29 100.0 32 ............................. TACGCCGAGTACGACGTCATGACGCGCTACCA 36294 29 100.0 32 ............................. GAGCGATGGGCAGGGTTGCGTCCGGTGTGCTG 36233 29 100.0 32 ............................. GCGTCGTCAACCCCGCCGGATCGTGACCGCGG 36172 28 79.3 74 ..T......A...A....C..-.A..... GAGCCAGCACGAAGGAGAAGGAGTGCCGCAGCCCCTCCCCGCCGCAGAGTTCGTTGTCCGCGGACAACAAGCGC 36070 29 82.8 32 .C.......A...A..........T...A ACCTGCGGGGTGGCGCCCCAGCCCAACCAACG 36009 29 86.2 31 .......T.....A.......C..T.... CGGACAGACGTGCAGCTGCTTGTCAGGCCCT 35949 29 86.2 49 .............C.........C...GC CGCCAGGGCTGCCCCGGTACAGAGTTTGTTGTCCGCGGACAACAAGCGC 35871 29 93.1 32 .C...........A............... GTCCGCATCCTCCTCGTGCGCGCGATCCTGGA 35810 29 89.7 32 .............C.....A....T.... CGCATAGTGGTCGCGGCCCTGCCCGCCGGCAG 35749 29 96.6 32 ......T...................... TCCGGGTTGACCCGGGCCCAGGCATGGTCGAC 35688 29 100.0 32 ............................. CCACGATCGGGCGGACTCAGGTGGAGCCGAAC 35627 29 96.6 32 ........................T.... CCCGTGGTCATGCTCGCGTGGACGGGCCTGGT 35566 29 96.6 32 ........................T.... TCTACTTCCGGGCGATTCCCGCCCGGCACCCG 35505 29 93.1 32 .............A..........T.... CAGGCCCGCGGCCGCGGCCAGGCCGCACCGAC 35444 29 89.7 32 .............A...A......T.... GCGAAGCCCCGGCCGCCGCCGCGTGCCTCACC 35383 29 96.6 32 ........................T.... ATCCGGTGCCCCGGGTCCGGGAGGAGCGCGCG 35322 29 96.6 32 ........................T.... CAGCAGTCGACGGCCTCGTCGACGCCGGCCTC 35261 29 100.0 32 ............................. CCGTTCGCGGTCGACCTGTCGAGCCTGCGCGG 35200 29 100.0 32 ............................. CTCCTGCGGGAGCTGGGTGACGACGTGTTCAC 35139 29 96.6 32 ............................T CGTGTTCGAGTGCAGTGGTGAGGTCGGCTACC 35078 29 100.0 32 ............................. CTGTTCTCTCCCGCACGGTGGAGGTGCCCGAC 35017 28 96.6 32 ........-.................... ATCCTGCCGTGGCCCTGCGGTGAAGAGGGCTG 34957 29 100.0 32 ............................. CCTTCGCTGGACTCCGACGCGCGCTCAGTCTC 34896 29 100.0 32 ............................. TCCGGCGGCGGACCGGCCGTGGCCGTACCGCC 34835 29 100.0 32 ............................. GTCGCCGGCTGGATGGCCATCGCCGAACAACT 34774 29 100.0 32 ............................. CTACCTGTTCGCTTTCAGCCATGTGTCCCCCA 34713 29 96.6 32 ..................A.......... ACTGGTGGGCGCAGCACGGCAGGCTCACCGTG 34652 29 100.0 32 ............................. CGTCGAGAACGCTCCCGCTCATGGCCGGGTAG 34591 29 100.0 32 ............................. GCGGCAGGGCGCATGATCAACGCGCTCGGCCG 34530 29 100.0 32 ............................. CCGCGGTGGAGTCCGCACGCGCGGTCCGCGAT 34469 29 100.0 32 ............................. TGGGTGGCCGACCCCGCCAACTGGTTGCGGGT 34408 29 100.0 32 ............................. CGCAGCACCGTGTGCTCGGGGTCGAGGGCTCC 34347 29 96.6 32 .................A........... GTGCCGGCGTTGTCGGCACACCCTCGAGGAAG 34286 28 93.1 32 .............G..-............ CGGCACCTCGGCGGCTCGGGCGGGACGACGCC 34226 29 100.0 32 ............................. CTCTCCAGCGCTCATGAACCCGTCGGACCGCC 34165 29 96.6 32 ...T......................... CCGGCCGACTCGGACTGACACCTCCGCTCCTT 34104 29 100.0 32 ............................. CGGATCAACCGGCGCAACGGCGGCTGGCGCAC 34043 29 100.0 32 ............................. CTGATGTCCTGGCGGACGCCGACGATGGCCTT 33982 29 100.0 31 ............................. GTGGTCTGGGATGAGGGCGCCCGCCACTCGA 33922 29 100.0 32 ............................. GTCATGGAATGGGACGGCGGCCGCTGGTGGCA 33861 29 100.0 32 ............................. TAGGCGAACGCCATGTCCATGTGCGGGTCCGA 33800 29 100.0 32 ............................. CCCGATCCTGGACAGCCGACGAACGGCGCGGT 33739 29 100.0 32 ............................. CCCCACGGTTCGACACCCGCGAGGATGCACTC 33678 29 100.0 32 ............................. CTCGCCGATCTCCCCTGGGAGGCCCGCGACTT 33617 29 96.6 32 .C........................... CGGGCGGGCAACATCATGTGGGCGACCTCCAT 33556 29 100.0 32 ............................. GCCCGCGACAGGTGGGTCCGGCGCTCCGCGGA 33495 29 79.3 31 ............AA........C..CGA. GCAGAGTTTGTTGTCCGCGGACAACAAGCAC 33435 29 82.8 32 .C..........AA.A...A......... GTGTCCCGGTCGTAGGCCCGGATCTGCGGCAC 33374 29 100.0 32 ............................. TTCCCAGGGCCCAAGCCTTCCACGCCGACCGG 33313 29 96.6 32 ............A................ TCCGGCGGCGGACCGGCCGTGGCCGTACCGCC 33252 29 100.0 32 ............................. CCCGGCCAGGGCGGCGGCACACCGGCCGCGTC 33191 29 100.0 32 ............................. GTGGGCCCGCTCCCGCTCGGCGTGTGGATTCT 33130 29 93.1 32 .............A......A........ CCGCGCGGTCGGCGGCAGTTGAGGCCGCCCGC 33069 29 93.1 32 ............AA............... TACTGCCTGGCACATCGCCAGCTCGTGGTGCC 33008 29 100.0 32 ............................. CTAGCCACGGGGCGCCCCGGGGGCGGGCGGGG 32947 29 100.0 32 ............................. CGCCGGCACTTCCGGCGAGCCTGACCAACACG 32886 29 100.0 32 ............................. TCGTGCGCGTAGTCCTCGACGAACACGCCCGC 32825 29 100.0 32 ............................. CTCATGGGCGAGCGGGACGGCGTGGACCGCAC 32764 29 93.1 32 ...........A............T.... ACCTGCGGGGTGGTGCCCCAGCCCGACCAACG 32703 29 82.8 14 .......T...A.A.......C..T.... CGTGCTGTGTGCTG Deletion [32661] 32660 29 75.9 51 ..........G..A.A......CC...GC CGCCGCAGGGCTGCCCCGATACAGAGTTTGTTGTCCGCGGACAACAAGCGC 32580 29 72.4 0 .C...........AA......C.C.GAA. | ========== ====== ====== ====== ============================= ========================================================================== ================== 95 29 96.1 32 GTCCTCCCCGCCGTCGCGGGGGTGCTCCG # Left flank : ATCCGCTCCCGGCCGCTGGCCAGAGCTGGACTCAGATGCGCGCTGCCGTGCCGCGAACAGAACTGGAACCCCGACACCTTGCCGATGTCATGCAGACCGGCACACAGCCCCACCACCGCCCGAGCGCGATCGCTCTCGCCCGCGAACCCCATCCCCTCCGCGATCCGCAGCCGCTGACTCTCCGACAAAAACGCATCCCACAGGTGCAACGCCATCGCGGCAGCGTCTAACAGATGCCGCACCAGCGGATAAGGCGGCAAGCCGGGATCGAGCCCCCGCGACTTCCCCCACACAGACTCGTCCGGCACACCCCAGACCTCAGACATCCCAACCCCCAACCAGCAGCACATCACCTACCGAAACCGGCATTCAACCAGCCCTCACCGACAACACCCTCCTCCCCAACCAGCCAGGTAGAGTCCCCACATGGACCACCCAGACCCCTCCTGCCGCCAGGCAAAGGATCTGCAAAGTCACTCCTAAGCCCCAGCTCAGGAAGA # Right flank : GGGCAGCGCCGGGCATGCACGCATCGGGCCAACGCTGCCCGCGTCGGGGAGTACTCCAACAACGCTCTCGCCTGTTCTTGCCCGCCGGAGTGGGCCAGGTCGTCACCTTTCCAGCAACGACGGTACTAAGGTAGCGCCATGACTGCTCCCTATAGCCCCGATGATCGGGAAAAGGTAGTTGCCAAGCTGCCGACTATTCTGCGGCGGGAACTCAAAGTACGTGCCGCAGAACTGGGTCTGGACATCCAGGACGCTGTCACGTCCGGGGTGACGTCCTGGCTGCAGCTCGAAGAGCATCCCGTGGTCGACACGAGTGGTGGTGCTTCGTTCGCCACGTACCTGCCGGCGGGGCTGTACGAGATGCTGAAGTCCGCAAGCAAGTCGCGCCGGCTGTCCTACAACCAGAGCGTGGCGCAGTCGATTCGGCACTGGCTGGACACCCATCCGTCGCCTCGCCCTGGGCCTGCTCGGGCGGGGGGAGCGCGGCGCCTCGTCTTCGG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.84, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGTCGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [43-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 41594-42725 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060827.1 Streptomyces sp. CRPJ-33 plasmid unnamed3 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41594 29 93.1 32 .......T...................G. TCTCGTGACCGCAGGCCGCTGGTGTTCGACAC C [41604] 41656 29 96.6 31 ...........................G. GCCCGCGCCGAGACCGGCCGGCCGGGGCACT 41717 29 96.6 32 ............................C CTGGCCCACACCACCGCGGCGGGACTGATGGC 41779 29 96.6 32 .........A................... GTTCGCGACGGACACGTTCCAGCTGTCGGGCA 41841 29 100.0 32 ............................. GCCGGTCGAGCCGTACAACCCGACCCGGGTCG 41903 29 100.0 32 ............................. GGAAGCCCTGGCCAACAGCAAGTTCGAGCAGG 41965 29 100.0 32 ............................. GTACGAGGAGACCGGGTCCTGGAACGCGGCGA 42027 29 100.0 32 ............................. GCAGATCCCCTGCCCGTGGTGCATGGGGCTCG 42089 29 100.0 32 ............................. GGCCGACCTCGACAAGCAGGCCGAACGCATGA 42151 29 96.6 32 ............................C CACCCGATGCCGGCGATCCGGGTGCAGTACCA 42213 29 100.0 32 ............................. CCCGTACCCGGCACCCCTCAGCAGGCGGGAGA 42274 29 100.0 32 ............................. GGACCGGCAGAGCGCGACGCCACGATCCTCAC 42335 29 100.0 32 ............................. CAGCGCCACCCGCACAAGCGGATCATCCGCGG 42396 29 100.0 32 ............................. GTGTGTACCCCGGCCACGATCAGGGGCGTGTC 42457 29 100.0 32 ............................. CCGCTCGGTCCGGTGGACCGGGCGATCACCCG 42518 29 100.0 32 ............................. AAAGCCAGCCCGACGCAGGCCCGGCGGCCGGC 42579 29 100.0 32 ............................. CGGCGATACGACGCCACGGTCCGCGTCAACGT 42640 29 96.6 29 ........................C.... CGATCGGGCGCCTCGCGTGCCCGGAAGGC 42698 28 72.4 0 .CGG.....-.C..T.........C...T | ========== ====== ====== ====== ============================= ================================ ================== 19 29 97.3 32 GTCCTCCCCGCTGCCGCGGGGGTGTTCCG # Left flank : CACCCAGACGGCACCCTCACCCTCGACCCAGCAGCCACACAACCCCTGCCCGAAGCCACAGACGGCAAGAAGATGCCCAACGCATCAGTCCGTGCCGTGATGCGCAGGACTCTCCCCGTCCGAGCAGACTGGCTCGCCGGAGCCGACCCCGACAGCATCGCACCACCCCCCTCCTGGACCGACCACCCTCTCCTCGGCGAACTACGCCTCCTGCGGCAACCCCTCCACTCAGGCACCGCCCAAGCCGTAACCATCGGCAAGCACAGACTCCGACTCGACGAAGACCTCGGCCTCACCCGTAAGTAGCCCGCCGGCCATCCGCATCGTCAACACACCCGGAAGGAAATCGAACACAGGTAGAGCCTCCATATCCTCAGAGCCGCTGACATCACCCCAGGCCTCAACCAGCGCCGGTACAGTGCGCACATGAGCCACCCCACCCCCTCCAACCGGAAAGCAAAGAAACGGCAAAGCCACTTCTAAGCCCCAGGTCAGGAAGG # Right flank : TGGATGCTGTGCCCACGGACGTGTATGTGCAGCACACCCCCACATCGGTGAGGAAGTCGCAGGGACGTCGACTCGCCCGTGCCCCTCGACAGAAACACCCCCGCGTTCGGCGGGGAAGGCGGGCGCTCTCACGAACGGTGCTCCCGACGGGCAGGCTTCATACAGGAAACGGCTGTCGCCGGGAGCGGCAGACGACTGTTCTGGGCTGCGTCGTCTGGCGACTCTACGCGGTGAGGCGGCGCTGGGCCTCGGCAGCACCAAGAAGTAACGCGGTGCAGGATCCGATGGTTGCCGAGTCCGGTTGCAGGCTGATGACGATCACGATGATGGTCACCACGAGCAACCAGGGCGCGGTGGTGTTCCAGGACAGGGGAAGGGCGGCTTGCATGTCTCTCCTTGCACACGGTGCCTGTGTGGTCACACAGGGCAGCGGACGTTGAGTTGTACCGGAGGCGCTGGGCACTTGGCAAGTCCGTCCTTCCCCTCCGAACCGCCCCTGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCTGCCGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGCCGCGGGGGTGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.90,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 49812-53388 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060827.1 Streptomyces sp. CRPJ-33 plasmid unnamed3 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 49812 29 100.0 32 ............................. CGGTGCCGCGTCTCCGGTCGGACACCCGGCAT 49873 29 100.0 32 ............................. CCGATCATCGGCCCGTTCACCGGATGGGACCT 49934 29 100.0 32 ............................. GCCCTGACCACGGGCACGCAGACGATGGACAC 49995 29 100.0 32 ............................. CACAGCTACATTGAACCCATGGGATTGCGTAG 50056 29 100.0 32 ............................. CGCACCCCCACCCGCCCCTTGGGCGGGGACAG 50117 29 100.0 32 ............................. TTTCACTGTGATGAATCACCACACATGAACCT 50178 29 100.0 32 ............................. ACGGGGAGCCGCTCCGCGCGGGACACGACGGA 50239 29 100.0 41 ............................. GCGGCGATGTCTGCGGTCTCGGTGGTGTCGGTCATGCGGCG 50309 29 96.6 32 ............................T CCGGACGGGACCCCGGCTCCCGCCGTGCCCCA 50370 29 100.0 32 ............................. CTGGACGCGCTGACCGCGGTCAACGTGCGGCT 50431 29 100.0 32 ............................. GACAACGGCACGGTCCGCTCCTGGCAGCTCCT 50492 29 100.0 32 ............................. GCGATCAGCGGCATGCCGTAGGTGATGGCGCG 50553 29 100.0 32 ............................. CACTCCCAGCACGGCGACCGCCTGTCGAACCG 50614 29 100.0 32 ............................. AGGACGCGCTGATCCTGTGGCGCTACGGCGGC 50675 29 100.0 32 ............................. CTGGCGTTCGCGCTGGTGATCCGTCAGGAAGC 50736 29 100.0 32 ............................. CTCCAGTCGCCGACCGCGCTGCGGGCCGTGCT 50797 29 100.0 32 ............................. AGGTCATCGTGCCCGACAGTGTGTGGGACGCG 50858 29 100.0 32 ............................. TCGCGTGCCGCGCTCGCGCCGGCGGTCACCTC 50919 29 100.0 32 ............................. ATCCTCGGCCCGGTCTTCGCCGAGCTCGGGCC 50980 29 100.0 32 ............................. TTGCGCGGCAAGAGCGGACGCCGGGTGGTCAT 51041 29 100.0 32 ............................. TCGCTCTGCCGGTCGGCGACGGCTCGGCGGCG 51102 29 100.0 32 ............................. CCCGGGCTGCTGTCCTGGATGGACGAGGTCGA 51163 29 100.0 32 ............................. CCGTCATCTCCGCCCTCCGGCAGGCCGGGGCC 51224 29 100.0 32 ............................. GCAGCGGTCTGGTGGATCGGCCATCGTGAAGG 51285 29 100.0 32 ............................. GTGGCCGACCGCCTCGCGCAGCGCCTCAAGGA 51346 29 100.0 32 ............................. ACCGGCGCCACCTACGCGCGCGACCTCGCCGA 51407 29 100.0 32 ............................. TTGTCCCAGCGGGACATGCAGTTCGCCGAGCT 51468 29 100.0 33 ............................. CCGGCCGACCCTGGGCCCGCGGTCGCGTCCGAG 51530 29 100.0 32 ............................. CGGTCGAAGCCCGCGGACTGGGTGCCGCCGGC 51591 29 100.0 32 ............................. GTGTCCCGGTCGGTCATCGCGCGTCCTGGGTC 51652 29 100.0 32 ............................. ACGGCCGGGCCGGGCGCGAAGTGGCACGGCGA 51713 29 100.0 32 ............................. CCCCTCACGCTGGCCGCGCTCCGCCGCCGCAT 51774 29 100.0 32 ............................. ATGGTGACGACCCCGCTCGCCGGGGCGGCTGA 51835 29 100.0 32 ............................. ACGAGCGCACATGAACCTCGGCGAATGGGCGG 51896 29 100.0 32 ............................. AGCATCCGCGAGCGGACCCCCGTCATGCAGTT 51957 29 100.0 32 ............................. CTCGACAAGGACTTCGGGTCGCTGACCGGCGC 52018 29 100.0 32 ............................. TTGGCCCACCTCACGCATAGACAGCTGGCTGA 52079 29 100.0 32 ............................. CCTCCGACCGCCACCCGGCCGCCGGCCAGGCC 52140 28 96.6 33 .....-....................... ACATCGTGGGCGTGCACGGTGACCCGCTCCGGT 52201 29 96.6 32 ...............T............. GTGGTGTACATGGGCACGTTGCTGGGGCCGGT 52262 29 100.0 32 ............................. CTTCCCGAGGCGCCGAAGCTGCTCGCCCGCGG 52323 29 100.0 32 ............................. CCGTCCGCACCCGCCCGGCCGACCGGGACGCC 52384 29 100.0 32 ............................. TACCAGCGCACCGTCTGCTCTTGCCAGGGGCG 52445 29 100.0 32 ............................. CCGGTCGACCCGCGACTCGACATGGACCAGTT 52506 29 100.0 32 ............................. CTGGTGGACTGCTGGCAGGCGCTCAACGCCAT 52567 29 100.0 32 ............................. CCCTCGGCTGGACCACCGCACCCACCACAGCC 52628 29 100.0 32 ............................. ATCAGACCCCAGACATGGCAACGGCTTAGAGC 52689 29 93.1 32 ..T....T..................... GTGACGGCTGGGCCGCGCCAGGGGAGCATCAC 52750 29 100.0 32 ............................. CCGGCTCCTCCCGGGGTTGCGGGGCTTGCCCA 52811 29 100.0 32 ............................. ACGAGCGCACATGAACGTCGGCGAATGGGTGG 52872 29 100.0 32 ............................. AACAAGGCCCTCGTGCAGAACGCGGCCACGGC 52933 29 100.0 32 ............................. CGCCGCTACGACGAGCACGCCACCGCCCTCAA 52994 29 96.6 32 ..........................T.. GTGCGGTCGGCGGGGGCGTTGCGGACCGAGAC 53055 29 100.0 32 ............................. TACGACACGGGCGCGGTCGCCAAGCTGTTCGG 53116 29 100.0 32 ............................. TTCGCGACGACGCTGCCGGACATGACGACGGC 53177 29 86.2 32 .....T........T...........TT. CTGTCCTACTCTGGGGCCCAAGCGCAGCCATG 53238 29 89.7 32 ..T..........TT.............. CGAAGCGCACGGGCATAGCTCGCCCCCAGAAA 53299 29 93.1 32 ................T.......A.... CTGGCCAAGGAGCAGGGCGACTCCGCTGCTCA 53360 29 86.2 0 .CG....T........T............ | ========== ====== ====== ====== ============================= ========================================= ================== 59 29 98.9 32 GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Left flank : CCGCGACACCCAAACCCTCCTCACGACCACACCCGACACCCCCCACGCCGACGACGACACCGACGACGACCCCGCAGAACGCCGCGACGTCCACATGGTCCACCTCTGGGACCCGAAAACCGGCACCCTGCCCGCCGGCGTCAACTACGCAGCAGGAACCGACTGATGCCCTCCATGGTCGTCATCGCCACCACCGCCGTCCCCGACCACCTACGCGGCGCACTCAGCCGCTGGACCAGCGAAGTCGTCCCCGGCATCTTCGTCGGCAGCGTCTCAGCACGCGTCCGCGACGAACTCTGGCGCGCCGTCACCGACACCGTCGGCAACGGCGCAGCCGTCCTCGTCCACCCCGCAGCCACAGAACAGGGCTACGCCATCCGCACCGCCGGCACCCGACGCCGCGTACCCGTCGACTACGACGGACTCACACTCATCCGCATGACTGGCGCACCCAAGGCAAAGGAAATGCAAAGCCCTTCTTAAGGGCCAGGTCAGGAAGT # Right flank : GTCGAGGCGGCGGCAACTGCACCGGCATGTCCCCTCGCCGTTGCTGGGCTGCTGGGCGCAGCACCGTGTGGCAAGGGACAGGTCGACGTTCGGCCCGGTTCGCTCGTATGAGGGTTCAGTGGTGCGGCCCGGCGATACCGTGGTGACACACGTCAGACAGAAGCCCAGGAGTTGCCGATGAGCGAGCAGCCGGCCCTCGTGCCCGACCGCCAGCCCCTCGACGAGCAGGCCGCCGCGTCGGCCCGCGCGTACGCGGCCGACCAGCGCGCGAAGGCCGACGTCCTCGCCTCGGTGCTGGAGGACATCGCCGCCCACGGTTACCCGTCCCCGGAAGCGGGCGTGCTGTGGGAAGACGCCCGCGACGCCCACCTGGACCGCCTGGCCGGCGAGGAGCCCCGTGTCGCCTGAGCACGCACCGCGCCGGTCCCAGGTCGTCATGGTGGAGCCCGCGCTGAGCCAGCTGGCGAAGCTCACCGCCCGCGAGACGCACCGCCTGGACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //