Array 1 331185-330438 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLUH01000020.1 Providencia sp. wls1921 308, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 331184 28 100.0 32 ............................ AACACGTTGCATCACATGCCAGCGGCCATTGT 331124 28 100.0 32 ............................ GCGGCTAATGCAAATACAGCGGCAGCTAACGC 331064 28 100.0 31 ............................ TGATCCCGTCTCCATTAATGCCTCATTGGGC 331005 28 100.0 32 ............................ ATGAGAGAAATCCAACAATACACGGATAATTA 330945 28 100.0 32 ............................ TTATCTATGTAAGTTATTCGCAACCATCATCA 330885 28 100.0 32 ............................ TTAAAATAATGACCCAAGAACTCCAAGACCAC 330825 28 100.0 32 ............................ ACTCTGTATCTTCAAATATGGATTTTATTACA 330765 28 100.0 32 ............................ AATCGGTGATGCTGCGCTGTCAGTGAAAGAGT 330705 28 100.0 32 ............................ GCTATAAACCCAAGCGCCAAATCTAGCCAACC 330645 28 100.0 32 ............................ TATCACGTCGATGGTGTCGACGAAATCTCAAT 330585 28 100.0 32 ............................ TGTTAAAAAAATGCTCGACAGAACTACCGAGA 330525 28 96.4 32 ...........C................ ATGCGTAGAGCGTAGTATCTGTGGTGTCCATC 330465 28 82.1 0 ...........C..T......A..T.T. | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.3 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : ATAAAGTCAATACAAACGGTTCCTGAAAATGCTCGTCCGGTAAGTTATATCCGTCGGCAAGTTAAAGGGACGTCGCGCATTGAGTCGGATATGCAGAAAAAAGCGATGCTTTGGGCAAAAAAATCGGGGCAACCGTTAGCTCAGTGTTTAGCGGATCTCGAAAAATCTCGCCCGACTAAACACAGTCGATTGCCATTTATCTGGGTGGAAAGCCAACAGAGTAAGAGTGAACAACGGGGGAATCGACCTTTCCCGTTATTTATTCAATGTATCGAAGTAGATAAAGCGGTTGAAGGAACCTTTAATTGTTATGGATTGAGTCAGCCTAATAATGATGGACAAGCCTTCGCTACCGTTCCTCACTTTTGACCTTTGTTTTTTGCTCTTTAATAACAAGATATAAAATCAATAAGTTACAGTAGTCAGCAAAAATAAAGGGTATTTTATTAAAAATGCCCTTAACTGATTGTTGTAACTTATTTTTTGTTTGATATTTTATT # Right flank : GAAAATAACTTCATATAATGGAATAACAAAATTGTACTAGAGTGCAATTTGCATCATAATGCAATTTACTGAGGGGGAATATGTATACAGTAAAATATCATTTAGAAGCTGAAAAAGAAGCAAATGCATTACCTCTAAAAATAAAAGTAAAGTATGACCGAATAATACAAAAGCTTGAAAAATTTCCAAATTATTTACGGGAACCGGATACAAAATCGTTAGGAAATGGGCTTTTTGAACTTAGAACAATGGGCAGTGAAATTGCCAGGGGTTTGTGGGTATACCATAAAGGCAAAACAATCATTATCTTGAGGGTTTTTATCAAAAAGTCGCAGAAAACCCCAAAGTCAGAGTTTGATTTAGCTAAAAAACGTTTGCAGGAGTTATTAAATGATGAAAACGCATAAAGAATTGCACGCGGAATGGATGAAAGATCCTGAATATCAGGCAGCATACGAAGAAGAAATTAGAACTGAAAAATTACAAGCGATGCTTAAAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 343028-342278 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLUH01000020.1 Providencia sp. wls1921 308, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 343027 28 100.0 32 ............................ TTTAGGTGCGGCCATGTCCATATCCTCATAAC 342967 28 100.0 32 ............................ CGAAGAACATTCTTGACGACACTTACCAACGA 342907 28 100.0 32 ............................ CGCTACGGATGCACCGCTTGCCTGAGTTGCTA 342847 28 100.0 32 ............................ GTTGAGCAAATATGCGCAATTAGCGAAAACCA 342787 28 100.0 32 ............................ CGAAAAAGCAAATCGAAAGCCAAACCCAAAAA 342727 28 100.0 32 ............................ GCATGAGCCAGACACGGAAGAAAACATTGCCG 342667 28 100.0 32 ............................ GCTAACCGCTGCGCTTCTTGGTCAGTGATTTT 342607 28 100.0 32 ............................ TGGCAAAGCAGACCGCAACGATATCGCCTACG 342547 28 96.4 33 .........T.................. CTCCATCTTGTCACGGACGTCATAATATTTGTC 342486 28 96.4 32 ..............G............. GGAAAACCTGCTCGCTGTAGTGGATAGATTGC 342426 28 89.3 33 ..........GT.C.............. TGTCGCAAAGACAATGCCAGCTCGCTGCTCAAG 342365 28 85.7 32 ..........GT.C..........T... GAAAGAAGATGAGCAGAAAATCGCACTGTAAT 342305 28 89.3 0 ..........GT............A... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 96.7 32 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : GATACCCGTTCAATCCAGAATTCGGCACGTAAAAGTGAGTTGTTAGAGACTAACTGGACCGCAGCCACAACGGATTATTATAAAGAGAAGGCGATGTTCCAAGCTTCTCAAGATATTTTCAAAGATCTAAACAGCATGTCATTATTTGGCGGCCGTTAATTGATTTTTACCGCACCCTGTAGCAGTGGCATGTGTATCGGGTGCGGGTTTTCTTCTGAGATTATTTTCAATTTTCCCTTCTGATTTTTCTCACCTAATTTTTTAGCGTTTTAATATTTATATTCCAATCTATATTTCCGCTTTTCTCGTTCGAAATAACAGAGTTTATTTTTCTGTTGTTGGCTTATAGTATTTTTCACGATAAATTTGACCTTTGTTTTTTGCTCTTTAATAAATTGCTGAGTAAACAATAGGTTATTTGTTAACTGAAAACGGAAGGTATTTTAGTGTATTTCGAGCTAATCGGTTGTTGTGATTTGTTTTATCTCTGATAAGTTATA # Right flank : GGATGTAACTAAATCAGTGGCTATTAGCTCTCATCATTAACAAATCTTTTGATCTTAGCGGCTTGCTTGGATAATCCATCAAAAATGGCGTTACTTATATGCTTAGGAAAGTCTGTGGGTAGCTGAGGCAATAGGGTAGCTATAACAGTATCTGTTTTATCGGCCATATCAATCATGAGTTGAGTTGCTATATTTTTTGAAAAACCGACATATTCAGCGGTGCTAATGAAATGACGAGGTTGAATTTGTGAAAAATGGTATTGCTTATTTTTCCCTTGTAATGCCATCGCCATTTTGGCCTTTCTGACCTCAATCCCTCGTGCAGCAAATATCGGGAACGCGGACATAACATCATACAAGGGCGTTAAACGAAAAGATGACCCAAGTTCAATGAAGAGAGAAAAATTCTTGTCATGTCCGTCGATTGCACCCAGCATCCAGAACAGAATTTGTGATTTAAAGAACATTTCCCTGTCTTCTTGTGGTGTTTTCGAGCCCAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //