Array 1 91500-92915 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNWO01000001.1 Escherichia coli strain MOD1-EC6410 MOD1-EC6410_1_length_554969_cov_36.0703, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 91500 28 100.0 32 ............................ ATACAGTAGCGAACAACTGGCAAGGGGGGCTA 91560 28 100.0 32 ............................ TGATGAAAGTATCCTTTGCCACGTTTTTCCTC 91620 28 100.0 33 ............................ TGGACGCTGATGATCTGAGCGACGAGGAAAAAG 91681 28 100.0 32 ............................ CCGACAAGTAAATCCTGTGCGCCATCCTGCGG 91741 28 100.0 32 ............................ TGAATCCCGGAAAGAAAATTTTGCAAATCAGG 91801 28 100.0 32 ............................ CCGCGTCATCCACCGCCAACGCTGGAAATTCC 91861 28 100.0 33 ............................ GTATACGGCACATTTATAGACCCCGAGCAACAG 91922 28 100.0 33 ............................ CCAAAAACTGGTGAACGCGGATTACCCGGTCAA 91983 28 100.0 32 ............................ ACATCATGAACGCACAGCAAAATGCCGCGATT 92043 28 100.0 33 ............................ AAATACGGCATTTGATGGTTTTGTTGTCGCCAT 92104 28 100.0 32 ............................ GCAAAAGCCGCCCCCATGAACGCTGCAAAAGG 92164 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 92224 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 92284 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 92344 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 92404 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 92464 28 100.0 32 ............................ CGTCATGACTGCATTACCGACGCCGAAAACTT 92524 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 92584 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 92646 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 92706 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 92766 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 92826 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 92886 28 85.7 0 ....................A...C.CT | T,C [92906,92910] ========== ====== ====== ====== ============================ ================================== ================== 24 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 101974-102943 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNWO01000001.1 Escherichia coli strain MOD1-EC6410 MOD1-EC6410_1_length_554969_cov_36.0703, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 101974 28 100.0 32 ............................ AGTCGACAATGTGGCGCATTATGGCGGATGAA 102034 28 100.0 32 ............................ GGGAAAAGTTTAGAAGGATTTAAAAATGGCTA 102094 28 100.0 33 ............................ CTGAAACGCATCAAGTGAATTTAACGCGTACTG 102155 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 102215 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 102275 28 100.0 32 ............................ TGAGGAAGAAAAACCAGCAGCGCCACCGGAAG 102335 28 100.0 33 ............................ AGGCGGCGTTTGAGGAACGCATGGCGCTGTGGA 102396 28 100.0 32 ............................ AATCTGGATGCGCTGGTGCTCGCCGTTCGTCG 102456 28 100.0 32 ............................ GCATATGAGATGAGCGAGCGATAACGCCTTTA 102516 28 100.0 32 ............................ ACGCCCAGCGACTGACACCGATTGTGGTCCCG 102576 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 102636 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 102696 28 100.0 33 ............................ GTACACATTCGCAATCAAAATATATCTGCTAAA 102757 28 100.0 32 ............................ GCGCTGAAAGGTTGGCATGGACAGGAAGCAGT 102817 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 102916 27 85.7 0 ...G...A...............-C... | T [102936] ========== ====== ====== ====== ============================ ======================================================================= ================== 16 28 99.1 35 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //