Array 1 8197-14002 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNOD01000188.1 Xanthomonas oryzae pv. oryzae strain PXO112 scaffold187, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 8197 31 100.0 36 ............................... TGCGTTTGATGCATCTGTCGGCGTCATGCAGGCCGC 8264 31 100.0 33 ............................... TTGCGGATGAGCCGGAACACATACGCCGTGGCC 8328 31 100.0 35 ............................... CCGGCAAACTTACCGTGGTCTAGCTTACGCAGGCC 8394 31 100.0 35 ............................... CTTCTGTTGGCGGAGGCCTTTCGGGCCCGTGTGTT 8460 31 100.0 34 ............................... CAGTAAACTTAACGTTGTCCAGCATGTCAAACAC 8525 31 100.0 35 ............................... ACGAGCTGGACTCAGTACCACAGAGACTCAACCGC 8591 31 100.0 34 ............................... TGGAATGTTGTGGACAAGGTAAGGGGCGTGGGTG 8656 31 100.0 35 ............................... TAGCTCGCTCATGTCGATGTCCTCCCGCGGTGTCG 8722 31 100.0 36 ............................... GCGCCATAGAGCGCGAATCTCAAATGCGGCCTTGCC 8789 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 8854 31 100.0 35 ............................... GCCATTGCCGCATACGCCGCGTTGCGCATCGCTGT 8920 31 100.0 34 ............................... CTGCACTGCGTCGCCACGCGCATCGACATTACGA 8985 31 100.0 34 ............................... ATAGCAGCCGCAGATTACTTCAAAGGATCTTGCC 9050 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 9116 31 100.0 35 ............................... CCAGGGCAGCGGAAATCGTTCGTCTGGCTCAACAA 9182 31 100.0 34 ............................... ATGGCCTTGCGCCCGATCTTGCGGCACGCGACCT 9247 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 9312 31 100.0 35 ............................... GTGCCAAGTGTCTTACCAGCAACGGACGGCACATC 9378 31 100.0 34 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGACG 9443 31 100.0 35 ............................... TATAATGTCGCGTACATGACGTTTAATGACTCCGT 9509 31 100.0 35 ............................... TTGTCCTCATCCTGGAGCGCACCACCCGCCTGGCT 9575 31 100.0 35 ............................... CAGCGCAACATGGTCACGGTGCTGGCCGAAGAGCG 9641 31 100.0 35 ............................... GGCCAGACGCTGGGTGTCAGCCAGTCCGGTAATGA 9707 31 100.0 35 ............................... TCCGTAGGGGGTTCCCCCCTACACCCCCGGATCGG 9773 31 100.0 35 ............................... ATGAAGTCCGGCATGGGCAATAGGCTCAGCACGTA 9839 31 100.0 36 ............................... TGTGGATTTATGGGCGCGCTGTGTGGTTGGGCAGGC 9906 31 100.0 36 ............................... CTCAAAATTGCACAGTATCCAGAGGAGGTGACCACA 9973 31 100.0 35 ............................... GGACACGTTTCTTTTCCTTGCGGTATTTGTAAATG 10039 31 100.0 35 ............................... ATCAACGGCCCATTTGACATTGTGGCCTGGCAGCC 10105 31 100.0 34 ............................... AGCACTACTGCTGCATACTGCCCAGCTATGCCCG 10170 31 100.0 36 ............................... TCGCCTGTGGACCCGGACCTGGACACGGTCGCGAAG 10237 31 100.0 34 ............................... GTTACTCGTGTCGAAGTACCAAGTCTTAATCCCA 10302 31 100.0 34 ............................... TTAATCCGCATCTTGGCATACCTATAGGCATTCC 10367 31 100.0 35 ............................... TCCGCCCCATCTAAGTCAATCCAACTTGTTGGTGC 10433 31 100.0 34 ............................... ACACAACTTCGCGCCATCATCGCCGGCGTAACGC 10498 31 100.0 38 ............................... AGGGTGTTAGCTGGCACAAGCTGAGAAGCAAATGGAGG 10567 31 100.0 35 ............................... ACTGTAAGGGCATTGATCCAGGGACAGGCCAATAT 10633 31 100.0 35 ............................... CTGCGAGGGCGAGCTCGCGTACTTGCTCAATATAC 10699 31 100.0 33 ............................... TTGGGCGGATAGGCGAAGCCGTGCGCATTGACC 10763 31 100.0 33 ............................... TCGAGCGCTTGGCGCGCGGCGAACGGATCGCGC 10827 31 100.0 35 ............................... AGACCGTTCGGGGTGATGCCGAGCAGCTTGACCAG 10893 31 100.0 34 ............................... CTCCGGGACGGTCAGCTAGAGACCTTCCGCTACG 10958 31 100.0 34 ............................... GCCCACACGCCGATCGCACAGAAATCCGATGTCT 11023 31 100.0 34 ............................... GCACATGACGCTGCGCGCATCGCGCAGATTCGCC 11088 31 100.0 35 ............................... CCATTTACAGACAGACCTGAGGGCGAAGTGGCGTA 11154 31 100.0 33 ............................... CCAAATCGGAGGTCTGCACTGGCATATGCTGAC 11218 31 100.0 33 ............................... GTTAAGGAAGCTCATGCAGTTGCCCAGGCTCGT 11282 31 100.0 36 ............................... GTCCTGGGACGCCTCGCCGGCAGCGTCGCAGGCATG 11349 31 100.0 34 ............................... ACCTTCCCCGCGATGCGGCCGATGCGCTGCAGGC 11414 31 100.0 34 ............................... TATTTCGCACGAGATGCGTGCAGCACCTGCGATC 11479 31 100.0 35 ............................... AGCTGCGTTGGTCCGACCACTCTGGTGCGAGGTTA 11545 31 100.0 35 ............................... TCGGCGACGTGGAGCACAAGACCAGCAAGAGTGGC 11611 31 100.0 33 ............................... CCATGCGGCGAGGTTTCCACGCTGACACTCCCG 11675 31 100.0 34 ............................... TTAGCCACGATGGCATAAATGTCACTTGGCAGAT 11740 31 100.0 35 ............................... TGAGACTTGTCTCTGAGGCACCAGATATGCAGGTG 11806 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 11871 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 11937 31 100.0 35 ............................... TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC 12003 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 12069 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 12134 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 12199 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 12266 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 12332 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 12397 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 12464 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 12530 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 12596 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 12663 31 100.0 35 ............................... TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC 12729 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 12795 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 12860 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 12924 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 12989 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 13054 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 13120 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 13186 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 13251 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 13316 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 13382 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 13448 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 13514 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 13578 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 13645 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 13710 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 13775 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 13842 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 13907 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 13972 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 89 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //