Array 1 284473-285584 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RCJB01000002.1 Moraxella catarrhalis strain MC1 NODE_2_length_346998_cov_62.490580, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	============================	===================================	==================
    284473	    28	 100.0	    33	............................	ATTGGGCGGATAAGCCGTTCAAGCTTTGAGCGT  	
    284534	    28	 100.0	    32	............................	GTTACTCACTGAATTAACATCTGCTATGTTAA   	
    284594	    28	 100.0	    32	............................	ATTTACAGCTTCATCAATACCAGTAACTTCAG   	
    284654	    28	 100.0	    32	............................	ATAATTCAAATAATCTTGATCAAATTCCCCTG   	
    284714	    28	 100.0	    32	............................	TAATATTGCACATTTGAACAAACGGAATAATA   	
    284774	    28	 100.0	    32	............................	AAAAGGATCGGGCTATGATCTCTTAGGTGCTT   	
    284834	    28	 100.0	    32	............................	TAAGCTATGCAGGCGGTCAAGCATATGACAGC   	
    284894	    28	 100.0	    32	............................	TTCAGTAGTGATTTTACTGTCAATAGCTGCAA   	
    284954	    28	 100.0	    32	............................	TGGTGATGTGCTATATGCTAAGTATGTTTGAT   	
    285014	    28	 100.0	    32	............................	ATTTGCCATCAGAACCTTTGACGGCGTTCATA   	
    285074	    28	 100.0	    32	............................	CAGCGGCTCTATGGAGCGATGTACACTAATAA   	
    285134	    28	 100.0	    35	............................	CCAGTCGCTCAGTAGCGAGTTAAGTTTCAGTTTCA	
    285197	    28	 100.0	    32	............................	TAGAGGGTTCGTAGTCTTCCACTGAAATAGTC   	
    285257	    28	 100.0	    32	............................	ATTTTCACGGTTCTGCTGACGCAACGCTCCCC   	
    285317	    28	 100.0	    32	............................	AGCTTGCAAATAAAGCAAGTACAGCGTCAGTT   	
    285377	    28	 100.0	    32	............................	ATGCCTGACACCACACCGCCTGACTGCACTTT   	
    285437	    28	  96.4	    32	..........A.................	TAGCACCGCCCAGCCGCCCACACACGCACATC   	
    285497	    28	 100.0	    32	............................	AAGCGATTAATCCGCTCACCAATTGTTCTGTT   	
    285557	    28	  96.4	     0	..........A.................	|                                  	
==========	======	======	======	============================	===================================	==================
        19	    28	  99.6	    32	CTTCACGACCGCACAGGTCGCTTAGAAA	                                   	       

# Left flank :   TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT
# Right flank :  ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACGACCGCACAGGTCGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-7.40,-7.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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