Array 1 432-2290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWD010000192.1 Cuspidothrix issatschenkoi LEGE 03284 NODE_200_length_6394_cov_4.97575, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================= ================== 432 23 100.0 54 ....................... AATTATTCGATATCGTTGTCGTCGTCTTTGTCGTCGTAATGTTTCCACATATCT 509 23 100.0 49 ....................... ATGAAATTGTGAGGAATACAACGGGATCTGCTGACGTTTCCACATATCT 581 23 100.0 48 ....................... ATTGAACATCATGGATTAACTCTACTGAACCAGCGTTTCCACATATCT 652 23 100.0 51 ....................... CTCCTTCTATAACTAAGTCTGCTGAAAGACTGCTTAAGTTTCCACATATCT 726 23 100.0 48 ....................... TTCCTTTAATTGGTTTGTTTTGTCTTCTGTTAAGGTTTCCACATATCT 797 23 100.0 48 ....................... GCTGATAGCAACCACATATTTTTGCGGTTTGGGAGTTTCCACATATCT 868 23 100.0 53 ....................... TATCTCTGACTGGCACTACCCCTATTGAGTAGTCGTTTGGTTTCCACATATCT 944 23 100.0 51 ....................... TTTCCTCATTGAGGAATAACGTTCTTCAATAATCTTGGTTTCCACATATCT 1018 23 100.0 48 ....................... ATATTTAGCCTTGGTTGCTTCGGCATCATACTCTGTTTCCACATATCT 1089 23 100.0 55 ....................... TTTGGCTAACCCCCTTTGCTTGGCAATTGCCTTGAGTTGACGTTTCCACATATCT 1167 23 100.0 50 ....................... TATAGAAGATAGCCACGTCAGGATTTCCGGTTACGAGTTTCCACATATCT 1240 23 100.0 50 ....................... GTTTCTCTTGCCACACAACTTGTGTGGACTTAATTAGTTTCCACATATCT 1313 23 100.0 49 ....................... CTAGGATCTGATAGCTGAATTAAATAAGAATAAGAGTTTCCACATATCT 1385 23 100.0 51 ....................... TTACCAGGAGTGCGATCGCCGTAATGGATTGAGTAAAGTTTCCACATATCT 1459 23 100.0 51 ....................... ACCAGCGTATTGCTGGCAATTAATGTTAATTTGCATTGTTTCCACATATCT 1533 23 100.0 47 ....................... ATTCAACTTCTACAATAATCTGACCTTTGTTAGGTTTCCACATATCT 1603 23 100.0 50 ....................... AGCAATACCAACTTGAATTAATGCTTGTTGTAAAGTGTTTCCACATATCT 1676 23 100.0 51 ....................... GGAATTTATCCACTCTTTACCTGATTCATAATTATAAGTTTCCACATATCT 1750 23 100.0 51 ....................... ATTTTTTCCTTTCTAATGAGTAGGGTGTAAGAGAGAAGTTTCCACATATCT 1824 23 100.0 50 ....................... CATAAAGCGATCGTACTTTGTCCCTTGAAATTCAATGTTTCCACATATCT 1897 23 100.0 49 ....................... GATCTAACCACGCTTGAATCATCGTTGCTATACCCGTTTCCACATATCT 1969 23 100.0 49 ....................... GTATAGCCACCCACATTTCTAGTCATAGGTTCTTCGTTTCCACATATCT 2041 23 100.0 51 ....................... AATAATAATGCTGATTTTTTAAACTGGCATTTAAGGAGTTTCCACATATCT 2115 23 100.0 54 ....................... ACTTTACCTTTCTCCTTGAGGTCTACTACTAAATCACCTGGTTTCCACATATCT 2192 23 100.0 53 ....................... TATGAATGGTTGATTAATAGCGCAGAGCAAGCAATGTCAGTTTCCAAATATCT 2268 23 91.3 0 ........T.............G | ========== ====== ====== ====== ======================= ======================================================= ================== 26 23 99.7 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : GGGGATGGCATCCCCAAAGTAACGCTACAGGAGTTGAAGCCTCTACTCTACTTGGTGCAAACCTGGTTGAGCAAGTTTTAACGATGAATGTAGAATCCCCGCGTCTTTAGACCGGGGAGTGTCAACGGATATAATTGACTACATTGGTAAATATAATGCTTAAATATTTGTAATATCGTAGATCTTGACAAGTAACTTGCTAAATTTTACACTTATATAAAGACAAATTTGGCAGACCTAGAGCGAGGTCAAAAACCCCAGGGGTCCGCCAAATCGCCAGAACCTTGACAATTGAATACTTTCAGCGTTTCGTTAGTTTCAGTTTGTGCTTGACCCAAAGCCTGAAATGAGGTTTTTTAAGAGGTCCGCCAAAATCGCTCCTGGATTCCGCCCCCAGTTTATGTTTCAGATGGCGGGGTTTCCACATATCTA # Right flank : GAAAGGTTGTAAAATGTAGATCATCAAAATCATGTAGCATCAAAAAAAATGCCAATATCAGCTACATCCAGGAAAAACCAAACCACAGTAAAAAACGTTCCTCTCACATGGACAGATGATACAGAATTAGTTGGTTTAGTATTTGACTTAGAACCAGTCAACTCTGCATCTCTATACTCGCAATATACCATTGGACTTCATGCTTGGTTTTTAGACCAAGTACGCCAAATTAACCCAACACTATCAGCATATTTACATGATGGTGAATCCGAAAAACCCTTTAATATTTCATCCCTAGAAGGTCAACTACTTCCGACGGGAAAACAACTGCAATTACAAGCAAATCAAACTTATCATTGGCAAGTTAACGCCATTTCCCAGCCAGTAGTTCAATTCTTGAGCCAGTGGTTAACACAACTTCCACCCGTTATAACATTACGGGATGTTGCCTTACAAATAAAACAAGTCAACATTATTCATCTACCAACTACTTATCATCA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7396-5873 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWD010000179.1 Cuspidothrix issatschenkoi LEGE 03284 NODE_186_length_7527_cov_5.87486, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================================================================================= ================== 7395 37 100.0 34 ..................................... CTCCTTATGTTCGATTTTGTCCTTCATCCAATGG 7324 37 100.0 34 ..................................... AGATTTGAACAAGATAAATTTGACCATAGATTTG 7253 37 100.0 33 ..................................... CACAAAATCAGTTAAGCTCAAGAAAAGGCTCAA 7183 37 100.0 35 ..................................... TTGTTGTAGATTGGTAAGTTAAATTTCCATCTTTA 7111 37 100.0 37 ..................................... GGCGCATTGGGAATGGCAGGACTTGGGGCATCATTAA 7037 37 100.0 35 ..................................... ATAATAATTATTATTTTATTTATTTATAGGGAGAA 6965 37 100.0 33 ..................................... ATTAGTTCCATAGTTAGTAAACTTTATAAATTG 6895 37 100.0 37 ..................................... ATAAATTTTAAGCCTCCTAGCAAATGCTGAGAGAGGT 6821 37 100.0 35 ..................................... ATACCTGACAATGTTTCTACAGTAGCTTGCTGTAA 6749 37 100.0 34 ..................................... TTGAATATTGCCCAGAAGTATAAATATATCCCTG 6678 37 100.0 33 ..................................... TCTGAATGTTCTAGACATAAGATAAGAAAAGTA 6608 37 100.0 37 ..................................... TGGTCTTTCAAATGCTTTAGACATGGCATTATTTTGG 6534 37 100.0 40 ..................................... TAAAAATAGACAAGTCCGTAATGCTATGAGTAGCAGTTGG 6457 37 100.0 33 ..................................... ATTAAATCGCCAATATTTCAGTCCATAAAAAAC 6387 37 100.0 34 ..................................... AGCATTAAGTATGTCTTGTGCATCAGAGTCAAGT 6316 37 100.0 40 ..................................... GTGATGCTGTACTGAGTACATTGTATAAAATTGTACAGGC 6239 37 100.0 33 ..................................... ATCTCTCCCTCTCCCAAGAGTACGGCAAAAGAT 6169 37 94.6 221 ..............................C.T.... ACTTTTGAGGAAGAAATAAGCCTCAAATCCTTCCGGCGTAAGGGAAATACATTAAACACCCAAAAACGCCTGTAACCTAGATATAACAACAAACCAATCAAAACGAGGTAAAACCCTTTTGGAATATAAGTTTGAGGATATTTTAACAGTGTTTTTTGCCTAAGTCCCGTTAGGGATTGAAACCCAGTTTTTGAAGCAGTCTAGAACTGTGATCATTTCAG GC [6141] 5909 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================================================================================================================================================================================================= ================== 19 37 99.7 46 ATTGCAATTTCTACTACTCCCTATTAGGGATTGAAAC # Left flank : TCCGCGCACCTTACACAGCAAGGTTTTTCGCTATTTTGCCTCTTGACATATTTCCTGAAATGGACTATCATAATACCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCAGCACCCCGC # Right flank : TAAAAAATTCAGTTGCGTAACAACTTAGAAATACTAGCGATTTATCCTAATTCCTCAAAAACAATATCCTCATAAACCGACTCAATGGGAAAACTTAAATCAATACTTTGTAGCTCGATATTATCCCCCACCTGATAATTAAAAATCTCCCAATTACCGCGATCATTTTTGCGGTATAAATCAATCGCTATTTTCTCAGCATCAACCAAAACATAATCTTGCAAACTAGGATTGCGACGATACAATCTAAATTTATCCTCTCGGTCATAACTGGCTGTACTGGGAGATAAAACCTTAACATTGAGCGAAGCCGAAATGTCAACAATTAGACAGGGATATTGAATGGCGTGGATTGCAGTCCTATCTCTCTCGTCCCAAGTAACGCTCACATCAGGATAAACATAATCTTTCGTTTCCACAATATTTACACGACAATCGGAATTACCAACCTGATAACCACCGCCCCGTAAATGACCTTTAACAATGAAAATAATATTACT # Questionable array : NO Score: 8.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-1.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTACTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 2974-4598 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWD010000221.1 Cuspidothrix issatschenkoi LEGE 03284 NODE_241_length_4651_cov_3.0546, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 2974 23 100.0 49 ....................... ATGAGAACTAAAGCTAGTAATTGTTCTCCAGAAATGTTTCCACATATCT 3046 23 100.0 48 ....................... TTACCTTCAGAATTAATGTTAAACTCCTTTAGTTGTTTCCACATATCT 3117 23 100.0 49 ....................... TTTTCTAATTGAACCCTAGCTCTATACTCCATTTCGTTTCCACATATCT 3189 23 100.0 48 ....................... TCTGATTTTGTAATGTTTCCAATTCCCTAGATTGGTTTCCACATATCT 3260 23 100.0 50 ....................... GTCTGTTGTGGCTGTTCGGATTGTGGACTACCTACCGTTTCCACATATCT 3333 23 100.0 50 ....................... GTATATCCTGTTGATCAACCTCGACTAATTTAGCTTGTTTCCACATATCT 3406 23 100.0 48 ....................... ACCAATAATTGATGATATAGTCACACCATTCTTGGTTTCCACATATCT 3477 23 100.0 50 ....................... AATGAATACTGAAATGAAAAACCTTTAATTAAATCAGTTTCCACATATCT 3550 23 100.0 49 ....................... TTCACTGAACCCATAGTGGATTTCATTATCTTCTGGTTTCCACATATCT 3622 23 100.0 51 ....................... ATCTAAGTTAAATGACTTTTTGAACTCAAATTCTTCTGTTTCCACATATCT 3696 23 100.0 52 ....................... AATAGGAAGTCCCACTCTTCAGTGGTTTCTACAATTAGGTTTCCACATATCT 3771 23 100.0 54 ....................... ATTCACGCCATAACTGTATGGGGATAATTACAACGCGGGTGTTTCCACATATCT 3848 23 100.0 51 ....................... ATTGATTGACTAAGATTGACGCGATAAAAACTTTTGTGTTTCCACATATCT 3922 23 100.0 48 ....................... TACCAACTTCAAATTTAAAACTCATCTTTTAATTGTTTCCACATATCT 3993 23 100.0 51 ....................... ATACCATGCAATGCAAAACGATACGGAAATTTCCGAAGTTTCCACATATCT 4067 23 100.0 50 ....................... TATTGTCACAAACTAATATTAGTTCTTTATTAATGGGTTTCCACATATCT 4140 23 100.0 51 ....................... ATATATTTTTGCCAGGAGTTGGTGACGGATTTAGTTTGTTTCCACATATCT 4214 23 100.0 49 ....................... TCTATATTTAATTCGTTGCCCATCAAAGATAGAAAGTTTCCACATATCT 4286 23 100.0 50 ....................... ATTTCAGCTAACACCATAGCAGAAAATTATGTTAAAGTTTCCACATATCT 4359 23 100.0 49 ....................... AGCGATCGCTAATTAAACAAAAAGCAGATGGGGATGTTTCCACATATCT 4431 23 100.0 49 ....................... TCCAATATTATTTGATTTGAGCCAGTTTAGCCATCGTTTCCACATATCT 4503 23 100.0 50 ....................... ATCATCAGAATCACGGGATAGGCTTCCCGTCTTTGTGTTTCCACATATCT 4576 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ====================================================== ================== 23 23 100.0 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : TGATTATTTACGATTTACCTGACAGTAAAGCAGCAAATAAACGTCGGACTCGTTTACATAAAATGCTGGGTGGTTATGGTAAATGGACTCAATATAGTGTGTTTGAATGTTTTTTGAATGCTGTACAATTTGCTCAGTTGCAAACTAAGATAGAAAAACTAATCAAGCCTGATGAAGATTCTATTAGAATCTATGTACTAGATGCTGGGAGTGTGAAAAAAACTATTACCTACGGTTCGGAAACTCCTAGACAAGAACAGGCTATCATTATATAATTGATACATCAGCTTAAATTTTTGGCAAACCTAGAGCGGGGTCAAAAACCCCAGGGGTCCGCCAAATCTCCAGAACCTTGATAATTAAATACTTTCAGCGTTTTATTAGTTTCAGTTTGTGCTTGACCCAAAGCCTGAAATGAGGTTTTTTAAGAGGTCCGCCAAAATCACTCCTGGATTCCGCCCCCAGATTATGTTTCAGATGGCGGGAGTTTCCACATATCT # Right flank : AATTGATTTTCTGCATATACGTCAAAGCTGTGGGGGCATAGTTTCCACATATC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 28041-31072 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWD010000003.1 Cuspidothrix issatschenkoi LEGE 03284 NODE_2_length_79556_cov_4.95755, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 28041 37 100.0 34 ..................................... TAAAACCTTCCTGCCCCCGCAGAAAAAAAAAGAA 28112 37 100.0 34 ..................................... GGAAAACTTACGCCCCTCTATCTCGATATGCAAA 28183 37 100.0 42 ..................................... GTCACTAAGTTTGAATATAGATCGTCGTCCTGAAGCGAGAAA 28262 37 100.0 38 ..................................... TCTTGACATCTTCAGAGTAACTATCAAAGAATTGATAA 28337 37 100.0 33 ..................................... ATATTTCTGAAGAAATGGCAGCAGAAGCAAAAA 28407 37 100.0 35 ..................................... ATCTATCAATAAACTCGGTCTAGGGTCTATGTGCG 28479 37 100.0 34 ..................................... TGACTAATTCAACTACTCCAAAAAGAATAAACGG 28550 37 100.0 37 ..................................... AGAATTGTTGAAATCTAAACGAATATACATATTTTAA 28624 37 100.0 34 ..................................... GTTTGCCCCGGTTTATATAGGTGTCCTGCGGGGT 28695 37 100.0 35 ..................................... TTCCCTGCCAGTCTAGAGGCATCAACGGATTCTAT 28767 37 100.0 36 ..................................... AATATCTGCGGCTAATTCAACCTTCTCCAGATGAGT 28840 37 100.0 36 ..................................... CCCAAGGTTAGGGACTAAATTATATTACAGACTCGC 28913 37 100.0 34 ..................................... ATGTCGCTGAGTGCTTTATTTCTGGCTTCTTCAT 28984 37 100.0 40 ..................................... ATTAGAATTGTTGGTGAGTCAGTTCTTAGACAGAATTTAC 29061 37 100.0 35 ..................................... TTCACCGCGCTATTTGTAAGGAATTGGAAAGATAA 29133 37 100.0 35 ..................................... CCAAATATCCCAACAATTGAAAAAGTCAAAAAAGC 29205 37 100.0 34 ..................................... TTTCCATAGCTCTTCATTACTCATCCCTTCCCAG 29276 37 100.0 36 ..................................... TTTTAATAGTTTTCCCATTGTCTAGAACTTCGACAC 29349 37 100.0 32 ..................................... ACCAATGAACATCAGAGACATATTATTTAATT 29418 37 100.0 35 ..................................... GCACCTGGAAAGTTAAACGGCTGCTATATCCCCAA 29490 37 100.0 34 ..................................... CCCAAAATTAAAAGCTGGTGACAAAAAATCATCT 29561 37 100.0 38 ..................................... CAGGCCTATGATTCAGGTGAGGTATCACTTTGTGCGCA 29636 37 100.0 41 ..................................... TGTCTGTATCGCGGTCTGCCTCTTCGTGTGATGCTATCCAA 29714 37 100.0 42 ..................................... GGCTGAAATAAATGATAAGCACAGTGATCACAAGTACAGCAA 29793 37 100.0 34 ..................................... TTAATAGCAGCATAACCAAACCAGATCACAGATG 29864 37 100.0 38 ..................................... AATTCTACCACCAGCAAACATAGTATGGTGAGTATCAG 29939 37 100.0 37 ..................................... TTTAATCTTGGTATCTTTATTATTTTTTCTTAGTAAA 30013 37 100.0 33 ..................................... GCCGAAAAATGGGAGAAAGGGGCGGTTTATGAA 30083 37 100.0 39 ..................................... TTAATTTTCAGCGTGATCAAATGTCATTGATGCGTCCTA 30159 37 100.0 39 ..................................... TTAATTTTCAGCGTGATCAAATGTCATTGATGCGTCCTA 30235 37 100.0 36 ..................................... CTGCTCAGGTTCTAGGATAGATAAAGAGAAACTAAT 30308 37 100.0 34 ..................................... TTAGTAGATGGTCTTAAACCACGTCCAAATATTT 30379 37 100.0 37 ..................................... AGAAGCTAGAGATGCACAACAAGCTAAAACTGTAGAC 30453 37 100.0 43 ..................................... AAGCCCGTAATAGGTAATAACAATTCTGGTGAAGTCTCATCAA 30533 37 100.0 39 ..................................... TTAGAGCTATATCCTTAGCCCATTTAATCTGCTTTTCAG 30609 37 100.0 34 ..................................... AGCAGTAGACGCTAGTTTCTTGATTTTTGACCAG 30680 37 100.0 35 ..................................... AACCAACTGTTTAAATACTTTTCAGATGGTGAGTT 30752 37 97.3 32 .............G....................... GACAACGTTATTCAATAATGATGATTCATCAT 30821 37 100.0 36 ..................................... TTATGCAGACTAAGATTTGAAGAAGACCGCGCTTTA 30894 37 100.0 38 ..................................... ATTCCCACCTCTCTAGCTAGTTGTGCAATATTGATTTG 30969 37 97.3 30 ....A................................ ATCCCAAAAAGCAGGTAATCAGATATAATA 31036 37 97.3 0 ............................A........ | ========== ====== ====== ====== ===================================== =========================================== ================== 42 37 99.8 36 GTGACAATTACTAATTAAGGTAATTGAGGATTGAAAC # Left flank : TGTGTGACTGAACGTGATTTAGAATTGTTTTGGCAAGCTTTAATTAAGGCTTGGGAGTTTGACCGCTCTTCTGCACGGGGTTTTATGGCTTGTCGGGGATTGTACATTTTTAGTCATGCCAGTAAGTATGGTAATGCTCCCGTCCATGAGTTATTTGATAAACTGGAAATTAGGTCTACTGTTGATGTACCCCGCAGTTTTAGCGATTATCAAGTGGTACTTCATGATGAATTGAAATTACCCAATGGTGTCACTTTAACAAAATTGGCCTAAATTGCGCGGATGGGTGGGTGTAAAAACGGAGTGAGTATGATTAAGCTGGAAACTCTTGCAATGTCTGGATTTCAGTTAATAGGTGTTCCCAACCACCCGCGCACCTTACTCTGTAAGGGTTTCAGCGTTTTTCGCTCTTGCTCTATGTCCTGGAATGGGGTATCATCTGACCATCCGCGCAAATCTCTCTGGAAATTCCCTATTTCCAAGGGTTTCCCGGATCTGCT # Right flank : CATAATATTGCTCCAACTCGACGCGGAAAACATAAAATATTCATTGGTATGGCTCCCGGTGTCGGTAAAACCTACAGAATGTTAGAAGAAGCACATCAACTTAAACAAGATGGAATTGATGTTGTTATTGGCATTTTAGAAACCTATGGACGTAAAGATACAGCACAAAAAGCTGTAGGATTGGAAATAATTCCCAAAAAAACCATAATTCACAAAAATATTAACCTAGAAGAAATGGACACCGAGGCAATTTTAGCCCGTTGTCCCCAATTGGTTTTAGTTGATGAATTAGCCCACACAAATGTACCCAATTCAGCTAGAGAAAAACGCTATCAAGATGTAGAATTAATTTTAGCAGCCAACATAGATGTTTACTCAACAGTTAATATTCAACATATAGAAAGCCTAAATGATTTAGTAGCAGAAATTACAGGGGTTGTAGTTAGAGAACGTATTCCCGACCGGTTGCTGGATGAAGCGGATGCAGTAGTTGTAATTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACTAATTAAGGTAATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 304-1312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWD010000255.1 Cuspidothrix issatschenkoi LEGE 03284 NODE_310_length_3541_cov_2.96368, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 304 36 100.0 35 .................................... GACATCACTCTCTCAACTAGGTAATCAGGAGAAAT 375 36 100.0 48 .................................... ACCCATGCTCTACTAAGAGCTTAATGGGTCTTTGTTTACCTATACCAA 459 36 100.0 37 .................................... TTTCAGGGAATTGTTGGATAAGATGACAATGATTGGA 532 36 100.0 36 .................................... ATATCTGGCTGCCTTTAGTTCCTCAGTAGCTTTTTT 604 36 100.0 38 .................................... GTGTACATGATTCTGACTTTGGCTCTAGCCAAGAAACC 678 36 100.0 42 .................................... TCAAGTAATTGTCAAGGGGACTGACAAGCGTAATGCAGAGAA 756 36 100.0 41 .................................... GGTGTCTTAAAGTCACCAGTTTCGTAGATAGTTGTGTGATA 833 36 100.0 37 .................................... TTAGATAGAATTGTGGATAAGTTTGAAAGAAAGGAAA 906 36 100.0 37 .................................... TAGAAGGTGTCGAAGTCGAAGCTGTGCTTACGTTCCC 979 36 100.0 38 .................................... CCATTTAGTAGCTTTGTCAAAGCTACCATCTATAGCTA 1053 36 100.0 41 .................................... ACAATAAGGAATTCTATGAGGATTGAGCACGAGACTAACGT 1130 36 100.0 35 .................................... TGCAACGAGTTCGCCACTTTGGGTCACGTAGGAAG 1201 36 100.0 40 .................................... GGCAGAAAGTTGTAGAGAACGTCCCCTTGTAGCAAGATAA 1277 36 91.7 0 .....C............G..............G.. | ========== ====== ====== ====== ==================================== ================================================ ================== 14 36 99.4 39 ACCGCTTCCTTTATAGGAAGTGGAATTAATGGAAAC # Left flank : GTTTTTGGGTATTTAATGTATTTCCCTTACCCCGGAAGGATTTGAGGCTTATTTCTTCCTCAAAAGTGTTTAAGTCCCGTTAAGAAGACTAAAACAAAAATCGGGGATCTTTTTTTCCCACTGCGGCCGGGTACGCTAGGAGGTGCAAATGTTGATTCTTTCGTTGACCCGGCCGATCTCTCTCTGGGTAAGGGTTTCAGGTGTTTTGACTGGTCGGTTTTTGCTTCTATATCCTCTGGGTTTGATACCCGGCCGAAAATGGCATCTAGACAGTAGACAGGGTAAGGGTTTATAATGGGGGCTA # Right flank : CTTGCTGCTGTGATTGCAGCAAAATTTTCAGTTGTACTGATCTCTGAAGTATTTTTTAATAAAACTTCATTTTTGTTAACAAACCTACCTAAAACTTATTAAACAAGTTGAATTTTCTGTTTGTTTGTAACAGTTAATTGATATATGTTGTCAAAATCATTCTTTTAGTTAGAAACTAAGAAGACAACAAAGCAATTATTTTTATGAACGCTATTTCTAATCTGGAATTTAAACGATCAACCTGGCAAACCGCCATCATATTGACCCTAGGTTTTTGGCTGAGTGGGAGTCTAGTTTTAGATTGGGTAATTATGCCTAGTATGTACTTTGCTGGCATGATGAAAGAAGCTAGTTTTGCCACAGCAGGTTATGTGGTTTTTTGGAATTTTAACCGCCTAGAATTATTAGCTGCCGGTGTGGTTTTAACTTCTGTCTTGGCCATTAGCAAAACACAATCTCCTTGGCGTTGGAGTAGTATCATGTTATCTGCACTACTTTTA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCGCTTCCTTTATAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1032-1808 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWD010000271.1 Cuspidothrix issatschenkoi LEGE 03284 NODE_368_length_2986_cov_4.58727, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 1032 36 100.0 50 .................................... GCGTATTTGTTTTGAACGATGAAGATTTCTCTCCAATACATTTCTGTGGA 1118 36 100.0 33 .................................... TTTTACTTTACTTTTGTAGCAATATGAGTGGGA 1187 36 100.0 33 .................................... TGAGGCTTCTTGAAATCAAGTACAGGTCTTAAA 1256 36 100.0 37 .................................... ATGCAGGTCAGAAAGATTGAATGTTAGTGTCGACATA 1329 36 100.0 34 .................................... TCAGAAGGTTCAATTTCCTCAATTTCATCTGAGT 1399 36 100.0 34 .................................... CTTTCTTACAGTAGACTTTAAGTGTTTTCTTATT 1469 36 100.0 47 .................................... TAGGTAAGATAACTTTACTTTCTTAGGATAGGAATTTTCTGATTAGA 1552 36 100.0 42 .................................... TATCTGAAGATTAAGTTTCCTAAAGAGAAGAAAGTTAATCAG 1630 36 100.0 36 .................................... ATAAGGATAGAATGTTGACCATAAGGACGGTCAATA 1702 36 100.0 35 .................................... CCCCGTTTCACGGGCCCCCACATTCTGAGGGCGAT 1773 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 11 36 100.0 38 ACCGCTTCCTTTATAGGAAGTGGAATTAATGGAAAC # Left flank : AGGGGGCAATTAATAAAATAATCAGTGTAATTGCGCCGTTGCAGATAGCAACTCCTAAGTTTCTAACTAATGCTGCACGATGGGAAATGTACATATTTTTAATGTGTGTTGTTGATGTTTTTTAGGTTAGGTATTGGTGCGTCAGATGTTACAAATCTGTTCATTGATAGAATTTATGCAGTCTGATGCACCCTACGGATGGGAAATGTACATATTTTTAATGTGTGTTGTTGATGTTTTTTAGGTTACTTACTAAGGGATGGTTTATACAAGGGGTTTGATGCGAATGAGGAATTTTTTTGTTGGTGATGGTTTTTTTGCGGCCGGGTAGGGGAGGAGGTGCAAATGTTGATTCTTTCGTTGACCCGGCCGATCTCTTGCTGGGTAAGGGTTTTAGCGGTTTTGATGGGAGGTTTTATGGCGCTGGTTGACTCTGTTTTCAGACCCGGCCGAAAATGGCATCTAGACAGTAGACAGGGTAAGGGTTTATAATAGGGGCT # Right flank : CCAAAGAACAAAAATAATAGATAAGATCCCCGACTTCTGTGATGAATTCTCTGTGATAGAGAAGATTTGTCTAAGAATGCGGGGATCTTTTGCATCAATATAGATACTAAAAATGACATTTTCTCATTCGCATGAAAAGTATTGAAAGATAACAAAATAGAGAGTAAGGTGTGATCCGTGATGTAAATAATACAAGCGTCAGGGTGAGGAAAAATCTACCATGTCACAAGAGAACAAAAATCAAGAACTGTTACGACAATATTTAGATTCAATAAATGATCAGGAAGAACGCAAAAAAGCCGAACAAATTGTGCGTCTTTCTCGGTTAAATATCGGTCTTGCTGTGTTATTTTCCATGCTAATTCCCATAGCAGGATATTGTTACACCCGACGCTGGAAAGCTTTCTTGTGGATGTTGTGCAGTTTTGGTTTAATGGGGGCAATAATTGGAGGATTTTCTCGTACTGAAAAAGAAGCCATGGAAAGAGCTTTTACTATAG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCGCTTCCTTTATAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 12770-11048 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWD010000035.1 Cuspidothrix issatschenkoi LEGE 03284 NODE_35_length_37738_cov_5.08035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 12769 36 100.0 41 .................................... TTTTTTAGGAGTTAGTTATGTCAGCGATCGCAACAATCAGA 12692 36 100.0 43 .................................... TGGCAAACTATCAGCAGGCTTCAGGCGATTATTATTTTGACTA 12613 36 100.0 38 .................................... CCGTGCAGTAAGCTTTACTGATAAATCAGTCTACTTTG 12539 36 100.0 38 .................................... AAGCAGCTAAAGTTAGTAGAGTGTTAGTAGATGATGAA 12465 36 100.0 36 .................................... GTCAATGGCACAATGGATTGCTTTGAAACTCAGAAT 12393 36 100.0 32 .................................... GTTCAGTTAGATTATTGGAGGGAGCTTATAGA 12325 36 100.0 35 .................................... ATAAGTTAATCCCCCACGTATGGACAAAGGGAAGA 12254 36 100.0 39 .................................... TTAATGAGCGATCGCAATTAATGAGCGATCGCAATTGCA 12179 36 100.0 38 .................................... TATATTGTTGTGTCATTGTCTGTACCTCGCTTGTTCTC 12105 36 100.0 36 .................................... ACTGCATTATCAGGTGTGATTGCACTTGGTTTAATT 12033 36 100.0 35 .................................... TACTATTATGAAGCAGTTGATGGACTAACTGATGT 11962 36 100.0 41 .................................... GCAATGAAAATCTATCCATATCTTATCTGCACTGCTTATAG 11885 36 100.0 41 .................................... ATTGAGGTTTATCATGGCTTACACAACAGTTCAAGTTTCAA 11808 36 100.0 36 .................................... TGCTCATGAGAATTACCCTATGTGGGTGGCATCAAT 11736 36 100.0 38 .................................... GGTATAACTATTACTGGAAAATGTGAAATTAACGGATC 11662 36 100.0 37 .................................... GTGGATATCAAGATAATCTTTCTTTATTTAATGGAAG 11589 36 100.0 39 .................................... TCGCACCTTTGCAGATGGTTGGACAATCGGAACTTGCAA 11514 36 100.0 34 .................................... TTGGTAAGGTAACTCCTTTCAGTTGTCTGAAAAG 11444 36 100.0 34 .................................... TTCTTGCAGGGATGGAGCAGTTGCACCATTAGTA 11374 36 100.0 35 .................................... CTCATTTGACACTTCTATAGTAGAACCTTCTGAAC 11303 36 100.0 37 .................................... ATTAACAGAATACTATGAAGATAAAATCTACTTAGGT 11230 36 100.0 36 .................................... TTCCTACGGATGTTCTTGTTCATTACTATATTCATA 11158 36 100.0 39 .................................... TTTACCTTCTCCTACATAACTGTGTTGCGGATCAATGAA 11083 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 24 36 100.0 37 GTTTCCATTCAATTAATATCCCCAGCGAGTGGGGAC # Left flank : ATAAGCCCGACAGCGACCCCGATCACTTAAACAAGCTAATGCACAATCACGGGGAGTCGTGGCGGGGGAGATGACACGATAGTCACTGCCATAGCGGTCTACTCCGTCAACCTGACTAATTGGGGGTAATCGATAGGATGGGTCTAATAAAATATTCGGGTCAATCCTATCCGGAATCAATGGATTAATCTGGCTAATGGGAAGGGACTTCTTTTCAAGTAACCCAGTTGTGCGGCTTCCCCCGCCTTCGGCTTGGGATGGTTGTGCCAGTGAGGGGACTAGCATTAAACCCACCATTAATAATGGGGCGATCGCGATTCGTACCATTTTATACCTCATAAAAATACATCTAAGCTACCACTGACCCCAACGGTTCGTCCATAGTTTCCGCCCAATGATTTTTTTGAAAACAAGAAGACCTCTAAAACTGAACCGCCCTGAATAGTCTTATTTAAGATTATTGGACTCGTCGAACGAAGCTTTAAGTAATTTTCCCAAGT # Right flank : CCCTCAATTTTAAACCCTTACCCAGTAAGGTGTCCAGAGACAGTTTCCGAAGGTCAGGAAAAAAAGTGTTAAAACCACCAACCGACAGCGGGAAAAAAACCCCAAAACCCTTACCCAGCAAGCGACCGAAGTTCGCAACGAAAAAATCAACATTTCAGCCATTTTACCTGACCTTCGGAAAAACTACACAATAATCGAACCCGGAGGTTCAATCACAGGCACACCCACCCCCCAACTTTCCACCTGAGAAAGAGTATGTCGAGACAAAGGATAAAACCTGACATTATCCTCCTCTAACTTGACAATCTTCCTTAACCGACGACGTAAATCATTGTACTTTTCCGTATTTAACTGACATTCAAACACAGAATACTGTACACGCTGACCATAACCTTCTAATAAATCAGCTATCTTTTTACGTCTTTTATCATCAGGAAGATCATAGGCAATTACATAAAATAACATAACATAAACATCGGCAAAAATCAATCAATTCGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATATCCCCAGCGAGTGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 23502-25361 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWD010000047.1 Cuspidothrix issatschenkoi LEGE 03284 NODE_48_length_33114_cov_4.74554, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 23502 36 100.0 34 .................................... GGAAGTATTCAAGGTGGCGCATTTCAGACTTACG 23572 36 100.0 34 .................................... TTCAAAGGCAGATGGATAATATAAGCTTTGAAGA 23642 36 100.0 34 .................................... TTCAAGATGATGGTACTTGGTTGTGGACTGGAAA 23712 36 100.0 32 .................................... TATCCAAGCCGCACCAATGGGTGAGTTTAAGT 23780 36 100.0 44 .................................... TTAGACAACCAAGAATACACAGTATTGGCTTCAGGACACTTCTG 23860 36 100.0 34 .................................... ATGACTGGAACTGTGGTCTATCTGATGATATGAC 23930 36 100.0 36 .................................... AGAAGACTCCATAACTATCAAAAACACTCTTAATTG 24002 36 100.0 38 .................................... AAGAAGTACGGATGCACCAACGCCAGCAAGTTTAATAA 24076 36 100.0 37 .................................... AAGTAATAGTAACGCAATGAGCGCGGGTATTGAATGC 24149 36 100.0 40 .................................... GTTTTCTCCCTACGCGATCGCTTATGACGGCACTAAATAC 24225 36 100.0 34 .................................... GCTATATATGTGGTGAGGAGTTACCCAAAGCTAA 24295 36 100.0 35 .................................... TCAGAACCGTAACAATTGGGAAGAAGGAATTCTTC 24366 36 100.0 35 .................................... ACTTATAGAACAATTTGGTAATGAGCTAACCCCAC 24437 36 100.0 41 .................................... GATAAAAAAATCAATTTTGCTACCATCAACAACGCTTGTAA 24514 36 100.0 36 .................................... TAAGCGAGTAAGTGACAAAAATTTTAACTACTTTGA 24586 36 100.0 36 .................................... ATTCCTAAAATCAATAGTTCTCACTAATCTATAAAG 24658 36 100.0 41 .................................... ATCAACAATATCAAAGTGTAATCTATGAAAAATGTTGCAAG 24735 36 100.0 35 .................................... TGATACTCTTTGGAACTATGGTATCCATTGGATAG 24806 36 100.0 36 .................................... ATCAGCGTGGAAAATCTAAGATGGCATCCAGACAGC 24878 36 100.0 36 .................................... GCATTCCAGACACCCTTGTTAAACGCTTCTAAGTAG 24950 36 100.0 38 .................................... TGTTACTGCAAGATCCCCAGTCAGTGCATCGGCTAATG 25024 36 100.0 41 .................................... GTTAACAGGTAGGGATACTCTAAGCGAAATAAATGATTTTG 25101 36 100.0 39 .................................... CTCAATGCTGCTACTTCTTTCAATTTCACTTAATAACTA 25176 36 100.0 40 .................................... TTGAGCTAGATACCATTCATGAGCGAGAGTTAGACGATTT 25252 36 100.0 38 .................................... CAGTCTGTACATTTAGCGGAGTCTTTAGGTAGAAAGAG 25326 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 26 36 100.0 37 GTTTCCATTCAATTAATATCCCCAGCGAGTGGGGAC # Left flank : TATAAAGGGGGACTTTGATAGATTTATTCCCCCCTTATTAAGGGGGGTAAGGGGGGATCTCGATCAAATATGACACTTATCAGACATCCTCTTAGAATATCAGGCAAAATTAGTAAGTATTGATGGTTTCTTTACTCAATATCCTGAACTCAATAATTATTTAATGAAATAGTTTGCTCATTCTATAGGGTGCGTTAATGAAATGTAATGCACCGTTTTCTATTAATATTTAACTGTCTGAATCAGGATAACCAAGATTAAAGGATTAACAGGATAATATTTGATTTTGATATTCACAGAATATTACAATTAGCGCAATTTTGTGAAAATGTAGATGAATCTTAAAAAACATCCTGTACATCCTCAAATCCTGGATATCCTGATTCTGACAAAATGCAACTTCTGAAGATATAGATTAATTTTAATAAAACATCCTGTACATCCTCAAATCCTGGATATCCTGATACGTTTAATTTATCTACAGAGAATAGAGAAGAATT # Right flank : CCCCTCAATTTTAAACCCTTATGTAGCAAGGTGTCCAGAGGCAGTTTCCGAAGGTCAGGAGAAAAGACCAACAAAAGGACAAAAAACCAACAGCCAAAAACCCTGAAAGCCTTACCCAGTAAGCGACCGAAGGTCGCAACGAAAAAATCAATATTTCAGCCATTTTACCTGACCTTCGGCCAACGCCACGCCACGCTATCGGCCAACGCCACACGCTAGTATCATAAATCACTAAACAATAATCAAACCCGGAGGTTCAATTGAACTCCCACCCCTCAAGTTTTGTCACCTAAGTGGACGTGAGATAACCAAAATGTGTGAAGAAAAGTAAAATCTCTGAAAACTTCTTCACTCTTGCCTCTTGCCTTGCCATAACGACAATTTTTAAAGCCCACCTACTTAATTAAGGAAATATTGCTAACTCGGTTTTGGGATCAAAGAAATGTATTTTCTCAGGAGTTAAAGATAGCCAAAGCTGTTCACCTGTATTTATAAATCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATATCCCCAGCGAGTGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 73800-74205 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWD010000004.1 Cuspidothrix issatschenkoi LEGE 03284 NODE_3_length_77077_cov_5.58537, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 73800 35 100.0 38 ................................... TTTCTACTACAGATATATCTACTGATTTAGCAAAGGTG 73873 35 100.0 36 ................................... TCTTTGTATATTTCCCAAATTCGAGGCCACATAGAT 73944 35 100.0 43 ................................... TGGAAACCATTCGCAGTTACTGTAGGATTTGATTTTGTTGCCA 74022 35 97.1 44 ...........................G....... GTTAGATACCATGCTGTTAGGATTTCTCTGGAATACCTAAGTAA 74101 34 88.6 36 ..........G.-......C...........C... GAAAGAAACCTTCTGTTAAAATGGGGTATTCTTTAG G [74110] 74172 34 91.4 0 ..-.........T................A..... | ========== ====== ====== ====== =================================== ============================================ ================== 6 35 96.2 40 CCGCTTCCTTCACAGGAAGTGGAATTAATGGAAAC # Left flank : TTAACATGAAGCAAAACACAAGGAAGCTAAATACTAGTAATTGATTGCCACCACACTAGAGCAGGAGGTACAAACTCTAATGAGAAATTCTTATTTAAGGTTTAACTCTTAACCTTCTTGTACCATGCTTTCAATTTAGCATGACTTTTTTCCCCTGTGTAATATATTTACGAAACGTGAGATTCATTAATATATTGCAACAATTGTGAAATGTTTCTTAAAATTGCCTTGAATTTTCAGGTTGTATCTGATTTAAGTGCATACAGCTATATTTTTGATACTAGATTTATACTGTTGGCCGAAGGTCAGGTAAAATCGCTGAAATGTTGATTTTTTGGTTGTGATAGCGAAGCGTGGCGGTAGCCATACTTCGGTCGCTTGCTGGGTAAGGGTTTCAGGGTTTTTTCATCGCTGTCGGTTAGGGGTTTTGCCTCTTTTTTTCCTGACCTTCGGAAACTGCCTCTAGACACCTTGCTGGGTAAGGGTTTAAAATGAAGAGG # Right flank : CCACTTATGGAAATTATTATTGGTTGGCTGTATCCCAAGTTGATGAGTACCTACGGCGATCGCGGCAATGTGATCACCATCGAACGACGCGCCCAATGGCGGGGTTATGATGTCACAGTATTACCCCTGGATCAAAATTCCACCGCAGCAGATATTAAATCAGTAGATATAATTGTTGGTGGTGGCGCACAGGATCGTCAGCAAGAAATTGTTATGCGTGATCTGCAAGGGGCAAAAGCCCAAGCCATGCGGGATAAAATCGAACATGGTACGCCAGGGGTTTTTACCTGTGGTTCTCCCCAACTGCTAGGCAATTATTATGAACCTGCCTTTGGACAAAGAATTGAAGGTTTAGGAATATTAGATTTAGTTTCCGTTCATCCTGGGGAAAATACGAAAAGATGTATTGGTAACTTAGTGATAGAAGTTACAGCTTCTCCGTTAGCCCAGGAACTAGAAGCAATGACAGGAACAAAACCTTATTTAGTGGGGTTTGAAAA # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTTCCTTCACAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 47003-47402 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWD010000006.1 Cuspidothrix issatschenkoi LEGE 03284 NODE_5_length_72549_cov_5.40971, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 47003 37 100.0 36 ..................................... CTTTTTCAAGGCATTCTGCAATTGATTGACTTTGCC 47076 37 100.0 34 ..................................... TTTTCTGTTCCGCCCAAAAAACGGGAACTCTCTC 47147 37 100.0 37 ..................................... AATTGATGATTTAGCCTGGGAAGTGTAGGCTATAAAG 47221 37 100.0 36 ..................................... AAATACAATAAGCAGTATTTCCAGTTGTATATAAAA 47294 37 100.0 35 ..................................... CCAGCAGGTGCAGATTTACCAGAAAAAGCAATAGA 47366 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 100.0 36 CTTTCAACCCGCCCCACTCCGGGAGGGGTGTTAAAAC # Left flank : ACTCCGGGAGGGGTGTTGAAACGCATCTCATCTAAGCTGGTAAACGGTCTATTCTTCACTTTCAACCCGCCCCAATCCGGGATTAAATGTTCTGTTGGTTTTCCTACAAAAAATTCCTCAAATAGATATAATGGGGCGCTTAAAAAGCCCAATCCATTTAAGATCATTGCTTTTATTACTTGTCCTGGGTTGAGGGTTTCTTTTGTTTTTATTCCAACTATTTTATTCACTTCTTCTACTAATTCCATCTCGTCTATTATTCCCGCTACTATTCCTAAATGGTCTATATTTAGGATTTCCATGGCTTTTTTTGACTCTTTCATGGTTTCCCCCCTCTCTATTTGATTACACTATTTTAACAAATAAAAGCCTGAAATCTTTGCTCGGCAATCTTTTCAGGCTTTACTTTCTCTAAATTTTTAATTCCTAAATTTGCTTTAGTATCTGCGGAATGTGGGTTAAAACTACATCATCAGTATTAGAGGCGTGAACAGATTCGA # Right flank : CTCCGCCCGACCAAACCCTTACCTAGTGACACTTCCAAAAGCAATTTTGGCGGATGTCCTAAATTTGCTCTTAATTTCTCTCTCAAAGGAGAATTATCAAAGCATTTCAACATCTGAAACACAGACTAGACAAGGGATTTGGACTTTTGGCAGAACCCCAGGGTTTTTGACCTCGCTTATGGTTCGCCAAAAATAAATAATTAAGGTGGATTCCTCCTTGCTCGGAGGTGATTCGGTAGCCACCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTTATTCCTGTTCACAAGGAACAGCAGCATCAAGGTAGGCAGCTACCAGGGTCAGAAAGCACGACTGTCTCACAACAGTCAACCTAACCCGCATTTATCACAGAACAGAGGTTTATCAAAAACATGAACTGCGGCGCTATTGTTATTTCCTATTCTATTATCAAAGTTCAGTATTTTGTCAATCAGGCTTTTCGGGATTGATAGGCGCTTATCGCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCCCACTCCGGGAGGGGTGTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 8620-10042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWD010000089.1 Cuspidothrix issatschenkoi LEGE 03284 NODE_91_length_20949_cov_5.57175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 8620 37 100.0 37 ..................................... CCTAGGTCTGTTTGTACCCATGCCTCTAGTTCGGCGG 8694 37 100.0 34 ..................................... TACCGTCAAACCCAGTGGTGAGCTTATCGTTAAA 8765 37 100.0 38 ..................................... ACGGGATTATTTACCCCACGTTTGCCAGTGTTGGCGAT 8840 37 100.0 35 ..................................... CTATTTACAAAGAACTGCAACAGCCCAATTAGGAA 8912 37 100.0 38 ..................................... CACACAATCATAAAAGATTGTCAATACTTTCCAGAAAA 8987 37 100.0 37 ..................................... GCTAAGAAAGATGACCCTTGGCAGATTATTCCAACTG 9061 37 100.0 33 ..................................... GGTTGGACGTGCTTTTTTCGAGATTGGAGTAAC 9131 37 100.0 35 ..................................... GCCGTGCATTGCTTTTAGCTTGTTGAGTAATTCTC 9203 37 100.0 34 ..................................... AGGGGCTTCGATTTCAAAGATTAAAAAGTTTCAA 9274 37 100.0 37 ..................................... CAAAAGACGGCCAATGGTTCATTCAAAGCCAAGCAGC 9348 37 100.0 33 ..................................... TGGCAAGGGCTGAAGAAGGGCGAGGAATATGGT 9418 37 100.0 41 ..................................... CTCATCTATGTCAGGATAATCAAAGCAGCGAGAATCAGCAG 9496 37 100.0 34 ..................................... AGTTAATCTTTAAACAATACGGTAGCAATGACAG 9567 37 100.0 35 ..................................... CCTAGTTCTGGGTCTGCCCAAGGACTTGCCTACTT 9639 37 100.0 39 ..................................... ATAGAAAGAGATATAGGTTTCTAAAGCTGCATCTTGGAT 9715 37 100.0 37 ..................................... TTCTATATCAGTTGTACCAGCAATGATATACACTGCT 9789 37 100.0 39 ..................................... TACTCGCTCTCCAATAAGCCTGATTAGTGCGATCGCTTG 9865 37 100.0 33 ..................................... CCTAACTATATCCCGACTGACTAGGGCATTAGG 9935 37 100.0 34 ..................................... CAGAACCACAATCAGGTTTCAATCCAACCCCAAT 10006 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 20 37 100.0 36 ATTGCAATTTCTACTACTCCCTATTAGGGATTGAAAC # Left flank : TGTCGAATGTTGTCTCCTGTGGTGGAAGAGGTAGCGACAGAATATGACGGACAAGTAAAAGTAGTTAAATTAAATACAGATCAAAATCCTACTGTGGCGAGTCATTATGGTATTCGCAGCATCCCAACTGTAATGGTGTTTAAGGGCGGACGACAAATTAACACTGTTGTTGGGGCTGTACCTAAAACTACTTTATCGGCTGCTTTAGACAAGTATGTGGCTTCTAAGGCATAGTGCATGATATGGGAATTTCTCTGGTAAATCTGTTTTTTATGCGCGGGTGGGTGGGTGTAAAAAACCCCGGTTGTAAAAAAATGGCTGAAATGATTTCTCTGCAAGGTTTTTATGACTTTTTTGTTAGTCAACCATCCGCGCACCTTATACAGCAAAGGTTTTGGCTATTTTACCCCTTGACACAATTTCTGAAATGGACTATTATAATGTCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCAGCACCCCGCT # Right flank : CGTAATACAACCAAATGCAAATTATATCTAGTATCAGCTTGTAAATAACGTTCTTGTAGAGGTTGCCATTGTAGCCATAATTGATAACGATTGGCAGCTAATAGAGTCATTAACCCAGATAATTGAGTCTCAAGTTCTGATTTAAAGATATTCTCTAACCACTGGTGTAAAACCATATTATCTTGAATCATCCCCAAGATTTCTTGAATAGTTTTGATATCATGAATAGATGCGGCAAAAGATTGATCATATAATTCAGTAAATAACTCCATTTGGTAACGCAAACGTTTTGCTTGTTTCCGCAGACTATGGAGAGTTTCACCTTCTGTTTTCAGATGTGATTCTAATTCATTAGGTGTCCATTTTGTTTCTAATTCTATTTTTGATTCCGTAATTTTAGTCCCAATTAACCAGCCTGGATGTAGGCAAAATTGACTAATTTCTGGTGAGAGTAAATCAGGTAATACGTGATAGATAGGTACAGAGGCAAAGCTTTGATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTACTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 28364-28541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWD010000010.1 Cuspidothrix issatschenkoi LEGE 03284 NODE_9_length_59212_cov_5.45737, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 28364 37 100.0 33 ..................................... AGAGAGCTTCTGTCGGTTCTCGCTCCCCCGCAC 28434 37 100.0 34 ..................................... CTCGCTCCCCCGCACCGGTCGTGCGGTATGTTAC 28505 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 100.0 34 CTTTCCCGATCTGTTTAGATTGGAATTAATGGAAACC # Left flank : CAGCTATAGCACTTGTTGATACCCAGATCCCCGACTTCTTTTATTTACAGGACTTACGCAAAATAGAACGAAAGTAGGGGTAATACCCTTCGGGAAGCAAGCTACATAAATTACCCCTACGAAATAATCAGGGTTGCAGTTACATCTTGCGTAAGTCCTAATTTATTATCTCCATAAATGATAAATTGATCTCAGAAGTCGGGGATCTTGAAACTGTTTAATGTGGGAATATGGGTGATTTTTTTAGTGTTACAAAGGCTGAAAATATCACCTATTATGAGTTTCAGCGATTTACACACAAAAATTGTATCATCAACTTCGACGCACCTCAGCAAATCCCCGAAACCCTATATTTTTCCTTGAGGTGTGTGGAATGTTTACTAGGTAAGCGTTTGGGCTATGTACTTGACGTTTTTTTTTGGCGATGAATATACTGTTTTTTAGAGATGCGTCGAATTGGTAGCTGAAACCTTTACTGGGTAACGCTCCCTAAACGAACT # Right flank : CTTTCGCCTTTGCCCAGATCCCAACAGAGTTGGGAGGCTTTCCTGATAGCCTAAAATCCAAGTTAATAAAACTCAGATCCCCGACTTCTAACATCAGTTCATCATCTATGAACAAGATAAAAAAGAAGTCGGGGGTCTTGTATGAAAGTAGTTTTTAAAAACTTTTTATTTAATATATGACTTACGCACAAGTCACGGAATAATGAACCACGAAGGAACGAAGAGAACGAAGAAAAGAGGGTTTGAGAGATATTTTGCGTAAGTCCTGTAATAAATAACCTAAATTCCAATTAATTAAAAATCAAAAATGTAGGGGTTTAGCAGTGCTAAATCCTCCTGTTTATAGAGATTACAGTAGTTTTCATGTCTTTAGACCAGAGTAAGGGCGAAGCATTCGGACAATTAATTATCGGTGTTTACCCAAGACTATCATCCGAATGCTTCGCCCCTACTGTGATAAAATTTTTATTCTGTAAAGCCTCAAATCGTGGATATCCTGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCCGATCTGTTTAGATTGGAATTAATGGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 3813-3635 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWD010000101.1 Cuspidothrix issatschenkoi LEGE 03284 NODE_103_length_18483_cov_5.36658, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 3812 37 100.0 32 ..................................... AAAAAACAGCGCACCATTGCGATGGCTGCGGG 3743 37 100.0 35 ..................................... TGCTAATAGTGGAATAGTAAAATCCAAATAAATCA 3671 37 97.3 0 .............................A....... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 99.1 34 GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Left flank : TCAGTCTAATTTAGTTTACGAATCCGAACCTTGAAAATATAATATGGATACAATAGCGCCGTAGTTCATGCTCCTTGGAGTCTCTGTACTATGAAAAATCTGGCTTAGTTTGGCAGTTGGAAGACTGTCATGCTTTCTGAGCCTGGTAGCTGCCCGCTTCTGATGCTGCTGTCGCAAGACAGGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTTAGCCATGGTCGTTATTTATAACGATGTGGATTTCCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAATCCTCTCAAATCTTTTTTTTGGCAAACCATAAGCGGGGGCAAAAACCCTGGGGATCTGCCAAAACTTTGAATCCCTTGTCCAGTATTGATTTGACTCATTTGAAGAGTGATGAATGTCCTCCATTGAGAGCAAAAAAACAGATTTTTTAACAGGTTTGCCAAAATCGCATCTGGAAACCTGTATTGGCAAGGGTCTAGACGGGCGCG # Right flank : ATAACTAGAATTTACTTGCGTTAACCATTCAAATAAAATAGTTGCAAAATAGAAATGATCATGGGAGGGTTGAAAGGAGTGCTGCGATCGAACACATATCAATAATTAAATAATGCCCTTGCAGCAATAATTTATTGTATAGTAAATGTTAAGTTCATGCGACATTAATTTGCGAAAACTCAGCATCATTAAATTGACTCCAAAAAACAGCATCCGCGACATTAATTTGCGAATAACGACATTAATTTGCGAAATGCGACATATAATTTGCGAATGTACAAGTGACAAATGGAGAATAGGAGACTCGAACCCCTGACCTCTGCGGTGCGATCGCAGCACTCTACCAACTGAGCTAATTCCCCTTATGAGTGCTTAAATTAGCAACTCTCAAATACACTTTACATATTAACATTCAGGAACAGCAGATTTCACATCTTTTTCTAAAAAAACTTCCTGCACCCGTTGTAAATCTAAATCAATCAAATAATCAATTGTCCAAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 4870-8986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWD010000150.1 Cuspidothrix issatschenkoi LEGE 03284 NODE_154_length_9896_cov_3.51786, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4870 37 100.0 35 ..................................... AGTTCAAAAGCATTGAACTAAAGTTGTGCTATTAT 4942 37 100.0 35 ..................................... AATCAAGATCATGGGTTAAGAGAAATAGAGTTTTT 5014 37 100.0 33 ..................................... ATAGATGGATATATCGAAATATCAAGATTACCA 5084 37 100.0 38 ..................................... CAGGAAATTCACCTGATTTGATGGAAGTTCGCCGTGAA 5159 37 100.0 35 ..................................... AATTAGCAACGCTGCGGGGTTTTTGTTTTCAACCT 5231 37 100.0 38 ..................................... TGATTAATTGTAATTGCATTCTTTTACTCCTTGGTTTG 5306 37 100.0 37 ..................................... GAATTTAGATGATGAATTAAAACTCTATTTCTGGTAA 5380 37 100.0 33 ..................................... TCTTCATTTCTTGTTCCTTAGCTTTTGTTTCCT 5450 37 100.0 34 ..................................... AGATTTACTGCTTTTCTATCCCATCGGTCATCAC 5521 37 100.0 32 ..................................... TCACATTTTAGTAGTTTCTTGCTAATCAAATA 5590 37 100.0 34 ..................................... TTCATCATAAGGTCTTCTTGAGTAAACTTCAGGG 5661 37 100.0 36 ..................................... CCTCTAATTCGTTCTCATCGGTTTTATAGTCTTCAA 5734 37 100.0 37 ..................................... AAATTAACTGAAGTGCGATCGCCTCCCTTAGCTAAAA 5808 37 100.0 34 ..................................... ATGAACCCTGCGCGATCGCCTATTCTTATCTTTC 5879 37 100.0 41 ..................................... AAGTTGGGCGTGAGTGTTTAGAGCGTGAATACCATATAGAC 5957 37 100.0 35 ..................................... TTAAAGTCTCAGCAATTAGCAAAACAAGAACTCTC 6029 37 100.0 40 ..................................... AAAACAATCGTCTGTCCTGTAGGGTAGGCATCAAGCACAG 6106 37 100.0 35 ..................................... CCTAGTGAGTTGCCCTTACTTTTTGGGATATATTT 6178 37 100.0 35 ..................................... CTTCCCCTTTCTTGAGCTTGCGGAAATCAGGGACT 6250 37 100.0 37 ..................................... TGTTATTCAATGAAATAAAAAGGCAGATAATACTAAT 6324 37 100.0 37 ..................................... GCCGTCTTTATCACGCTTAAGCCAAGGGCGATCGCTA 6398 37 97.3 34 .......................C............. CTATTTTGCATCTCTTAATCAAACATCCAGGGAA 6469 37 100.0 41 ..................................... AAGTTTATCAAATAGGAACAGAAAAACAATGTTAAACACAA 6547 37 100.0 38 ..................................... TATTCTTACCAGATATTTTATCTATTTTACGTTGTAGT 6622 37 100.0 33 ..................................... CCGTGAGTTAATACATGATTGCCACCTGCTCAT 6692 37 100.0 34 ..................................... TAGACTTTTTTGGATAGCAGATATTAGATCAGTG 6763 37 100.0 35 ..................................... ACAAAGTGAAATGCCACCAACATCACCAGCTTCTT 6835 37 100.0 34 ..................................... AACTGTTAATCTGTAACCGTTTTGAGCAAAAGCA 6906 37 100.0 35 ..................................... GTTGAATCTCTGCGTGTTTGAATTGAACGATGAAG 6978 37 100.0 35 ..................................... TCCTCAAGATACCCCGCAGCCTCAAGTAGGTTTTG 7050 37 100.0 36 ..................................... TTGTTGGTGGTGCTAGTATTAACCCAAAGCTGGCAA 7123 37 100.0 37 ..................................... CGTACGAAACTATTCAGGCGTTAGCCCCGCACATCCA 7197 37 100.0 35 ..................................... TCCTAATACTCCTATAGAACCCGATGTAAGGAATT 7269 37 100.0 32 ..................................... TTGTTCTTGTCGCGCTTGCCGTCATGGTCGTC 7338 37 100.0 37 ..................................... TTCAATTATTCATACCCACAAGTTTAAGTTTTCAGAC 7412 37 100.0 38 ..................................... AAAAGTAAAGCCACTTTTCGCAACTCTTGGGGCGTTAG 7487 37 100.0 34 ..................................... GTCGTAACAGGGCTTGAAATTAGTAGCTGCCGGA 7558 37 100.0 37 ..................................... CAACCAAGATTACAGGCGAGGTGCGTTCTACTCCTGT 7632 37 100.0 34 ..................................... TAGTCTACTCAAGGTCAGGGCGAGAGTCAATATC 7703 37 100.0 35 ..................................... CCAACTCAGGGGACACGCCACTGTTTTGTAGTTGA 7775 37 100.0 33 ..................................... TTATCGGTGGTGTTAGTCTTTTTTAGCGATCGC 7845 37 100.0 34 ..................................... CCCCTGTGGCTACAACGCCATACGGGATGGAAAA 7916 37 100.0 35 ..................................... AGGAATTGAATCTTGGAAAAACTGTTGCCCAACGG 7988 37 100.0 35 ..................................... GCCCGTAGGCGCTACATAAATTCCTAGATCCACAT 8060 37 100.0 39 ..................................... AATTCCTAGTCTTAGACACACCTTAGACCCAATCTTGAG 8136 37 100.0 38 ..................................... GACACACCCCAAAATATAGATAATTCCCCTCACTTGTG 8211 37 100.0 36 ..................................... AAACAGACTCTTGTCTTATTATCTTCATAAGGGAGA 8284 37 100.0 41 ..................................... GATCAACTTGTGAGTAAACAAATCTAGCGAACTTCTTACCC 8362 37 100.0 41 ..................................... ATCCTTACCCCATAAGCTTTTCACCCCTTGGACGCACGAAA 8440 37 100.0 33 ..................................... CTCACGTCATTAGATAGCATAGGCAGTTCTCAC 8510 37 100.0 34 ..................................... AACTTAACCAGATATCAAGAAACTCTTTAGGCAG 8581 37 100.0 33 ..................................... TCAGCCGCTTTATATACCCCATATACCCCAGTT 8651 37 100.0 37 ..................................... TTACCCGTCAACTCCAAGCGGGTCAAATTACCGTTAG 8725 37 100.0 34 ..................................... CCAGACGTAACTTCCACTTGTCCACACTAGACAA 8796 37 100.0 43 ..................................... GTAAATTCTGCCTAAGCACGGATTCTCCCACAATTCTCACTAC 8876 37 100.0 37 ..................................... GCACCTTTAGGCAACAAAAAAATAACTAAACCAGTAG 8950 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 57 37 100.0 36 ATTGCAATTTCTATTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAACGTTGTTGTTTCTTACGATATTTCTGAGGATAAGCGGCGGACTAAAATTCACAATATCCTCAAATCTTATGGTCAATGGGTGCAGTATAGTATTTTTGAATGTGAATTGACTGATACTCAGTATGCCAAACTGCGATCGCGTCTCAATAAGCTGATCAAGGCTGATACTGACAGCATCCGTTTTTATTTCCTTTGTGCTTGCTGTTTTGGTAAAGTGGAAAGAATCGGTGGTGAACAACCCCGTGATCATACTGTTTTCTTTGCTTGATGCGCGGATGGGTGGGTGTAAAAATTTTAGGTGAATAAAAAATGCTGGAAATGCTTTCTATACAATATTTTCAGGGCTTTTTTTTAGTTCACCCATCCGCGCACCTTACACAGCAACAGTTTCAGCGATTTTACCCCTTGACACAATTTCTGAAATGGACTATGATTATTTCATCCGCGCAACCGAACCTTGAAAACTACATATATACAGGCTTTCAGCCGCCCGCT # Right flank : CCACAAACTTGCTAGAGATTTGCTGCTAAAAACTGTCACCTATCAACTGTCACCTGTCACCTGCATTTCTACCTTTTGCCCAATTTTGGGTTCTGTACCTGCAATTAATCGCTCAATATTAGTCCGATGACGGATAATTACATATAAACCACCAGCAAGACCAAGTAAAATATAAGCTAAGGGTTGATGAAAAATTACCATTAAAATAGAAACAGCCACAGCCCCAGCAATAGAACTTAAAGATACAATTCTCGAAATAGCAATTACAACCCCAAAAACGCCTAATGTTGATAAACCGACTTGCCAACTAATAGCTAATAAAATACCCACACCAGTAGCAACAGATTTACCACCTGTAAAACCGAGAAAAATAGATTTACTATGTCCTAAAAGGGCAGCTAAACCAGCTAAAGTAACTAAATAAGGTTGCCAGATTTCGACATTTACAGTTGATGGCATTAAATTCTGGCTAGGTGCAATATTAAATAAAAAATAAACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //