Array 1 3889693-3888149 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021909.1 Salmonella enterica subsp. enterica strain ST1120 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3889692 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3889631 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3889570 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3889509 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3889448 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3889386 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3889325 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 3889258 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3889197 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3889136 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3889075 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3889014 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3888953 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3888892 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3888831 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3888770 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3888709 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3888647 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3888544 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3888483 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3888422 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3888361 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3888300 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3888239 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3888178 29 96.6 0 A............................ | A [3888151] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3907806-3905825 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021909.1 Salmonella enterica subsp. enterica strain ST1120 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3907805 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3907744 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3907683 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 3907622 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 3907561 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 3907500 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 3907439 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3907378 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 3907317 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 3907256 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3907195 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3907134 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3907073 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3907012 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3906951 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3906890 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3906829 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3906768 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3906707 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3906646 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3906585 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3906524 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3906463 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3906402 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3906340 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3906279 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3906218 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3906157 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3906096 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3906035 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3905974 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3905913 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3905852 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAACCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //