Array 1 2338128-2338615 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016091.1 Clostridium saccharobutylicum strain NCP 258 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2338128 30 100.0 35 .............................. GGCAATAAAAAAAGCCTTAGTATTAACTAAAACTC 2338193 30 100.0 34 .............................. TGTTTTCCATCCATTTCGTACTCATTCGAATTTA 2338257 30 100.0 35 .............................. GAAACTTTTTCTTTTTTATTTTTAGATTTAACGCT 2338322 30 100.0 36 .............................. AGAAATTTTATACACATAAGTTCATTCACTTCAAAT 2338388 30 100.0 36 .............................. ACTAGTGAAACTGCCATCAATACTTACATTGAATTC 2338454 30 100.0 36 .............................. TTAAATAATTATTAGAATTAGATATACTACTAGTTG 2338520 30 100.0 36 .............................. AAATTATAAGCATATACAAGTGTATTTGTTTTTCCT 2338586 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 100.0 36 GTTGAAGATTAACATTATATGTTTTGAAAT # Left flank : AGGGTGTTGAAACACAAGATGTTTCCTATATATCTACTTTGGATAGCTTGTTCTTAAAAGATTGTGTTAATATAAAAAAATTAATCAAACCTAATGGATTTAGACCTGTTAAAGCAGCACCAAGCTGTGGTTTAGAAAAAATGCGAGAATATGTATACCAAGAGTTTTTACCATATGCTTTGGAACCTAAGTTTAATACATATGATACTAGAAAATTTATTTGTACTAATAAGTCTATAGAGGTTAATGATAAAGAATCTATTATCTATAGTATTAATGATAAAAATCTATTTTTCTATTAAAAAGTAACAAGTATACAAATAATTTACCAGGCGATTTTAATAAGTAATTTGTAGCGAAATATCTATTTTATGAGCTTTTACTATTTTAAGTATTATTGTATTTAATTTTATAAAATAGCTGGTAAAATAATATGCAAATGTAGGTGAATGGCTGGATTAAAAGATATTAATATATATAGAAATGACTTATTTACTTTG # Right flank : TATAGATACAGTCCAACTAATTTAATAAAAATAAAAAAGGAAGAAGAGAATTTATGTATTTTGAAAATATAAAAATTATAGATATATCTACGTTATTAAAAGAGCCATCTGATATATATTCTCATACTAAGAGTGACATTTTAGAATATGAAACTCTAGCTGAGCATAATGAGCGGTGCATAAAATATTTTTATAAGATAGTAGATGTAAAAAATCTAGATAGTGTATTTAATAATTTTGAACAAAGACTATTAAAAGGCTGCTCAAGTAAATGCATTAATTTGTGGAAGGAAATTGTATTAAATACTGTATTTTTCCACGATGTAGGTAAGAGTAATCCTGGTTTTCAAAAAGAAAAAATGAAAAATGAAAAGTATAAAAATATAAAAGTAAATAATTCTAATCATTCCCGTGCATCAGGTATAGTTTTCTTTAATCATTATTATAATGAAGTATTTGCTGTTAATAATGATGAAGCTAAGGTGTTATTTGTTTTCCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGATTAACATTATATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 2367042-2367218 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016091.1 Clostridium saccharobutylicum strain NCP 258 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ============================== ================== 2367042 39 100.0 30 ....................................... AGGATTGGACATTTAGCGATTGTTATAAAT 2367111 39 97.4 30 ..G.................................... GAGAATATGCATTTGTTAAGTGCGTTAATT 2367180 39 94.9 0 .......C.........................G..... | ========== ====== ====== ====== ======================================= ============================== ================== 3 39 97.4 30 TAAAAAGTATAACAATACCAGATAGTGTAACAAATATAG # Left flank : GAATAATATATTCTGAAAGTTATGTTACAGTGCTATTGGGTAAAAACGAGAATAAGGGGAATGAATGATGATAAAATTGAAATTAACAAAAGTAATGGCAAGTTCATTAATACTAGCTTCAGTATTTGCATTAAATCCAATAGGAGCAAGTGCAGAATGGAAAAAAGATAGTAAGGGGTGGTGGTATACAGAAGGTGATTCGTGGGCTACAGGTTTGAGAGAGATTAACGGAAAGCAGTACTATTTTGACAAAACAGGATACATGGTCGAGGATAAAATTGTTGATAACTTGTATTTTGACAGTAATGGAGCAAGGACAGAATATATATGTGCTGACGGATTTGCAGTTGATAAATTAACTGGTACAATAATAAAATTTAGTAGACAAGATGCTCGGGTGAGGCCAGGCGAACCAGGTATTTCAGTAGTTATACCAAGAGAAATTGGTGGTGTTGAGATAAAAGGTATAGGAGGTAAGGCTTTTAAGATTTGTACTAACA # Right flank : GGAGATTATGCATTTTCGGACTGCAATAATGCTATTTTTTATGTTGGAAATGAGAAAACAAAACAACTTATTCTTAATTCAAATTCAAAGATAGATAGTAATAAAATAATAATAAAATCACAAATAATATAATAATTAAAGGTAAGCGTCAAAAATTTAGTAAATAGAATACAAGCACTTCCTTTGATAAAATATCGAAATATTCTATTTAAAAGGAAATTTTAGGAGATCCGTTTGTAGAGAGGGACATTTAGATTAAATGAAAATAGTAAATACATAATGTTCTTAAAAGGTGTGACAATTGGAGTTTGTACGTGTTGCACAAATAGAAAATTGAATCACTTTAAAATATAGGTAGGCTTTGTCAAAGTCTATCTTATTTTTTGTAAAAATATAGATAGAAAATAAAAATTATATGAGAGGAAATATTTTTATTTACGTTATATAATGTGTAAGAGCTTTTACGAAACTAATTGATTGGAGAAATTTTAATGAGGTGT # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAAAAGTATAACAATACCAGATAGTGTAACAAATATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 2726541-2725111 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016091.1 Clostridium saccharobutylicum strain NCP 258 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 2726540 28 100.0 36 ............................ TTGATGACGCTTGGTCTTCTGTCCAAAATAAAACCA 2726476 28 100.0 37 ............................ CTATAAAGGGGGAAACTAAATGAAAAATATAACACGA 2726411 28 100.0 36 ............................ AAATAGGTTGGTCGATAAATGAATCAACTGTAAGCA 2726347 28 100.0 36 ............................ GTGGAAAGAAGTATACTGAATTGCTTCATAAATCAT 2726283 28 100.0 35 ............................ TTCAACGATAATATTTTTTTAGCTAATTCAGTTTC 2726220 28 100.0 36 ............................ TTATTTCCATACACTTGATATGCTGTAGGTTCATCA 2726156 28 100.0 35 ............................ TCGATTTGCATTTGACTATCTGATGTTGCAAATGT 2726093 28 100.0 36 ............................ AATGATAACATTAATATGAATTTTATTAATGAAGAA 2726029 28 100.0 36 ............................ GAGATAAGAGATTCTGCTTTATTCAATGGATTAAAC 2725965 28 100.0 36 ............................ ACTAATTCATCAAGGCTAATATTATACACTTCACAA 2725901 28 100.0 35 ............................ TAGCTCTATAGCGTTTTGCATATCATTACTAATTG 2725838 28 100.0 36 ............................ AGAACTTGTCCTGGAACATTTGTTGCTTGCAAGTCT 2725774 28 100.0 36 ............................ TGCAATAACATTAACTTGATTCCATTTATCCCCCCA 2725710 28 100.0 35 ............................ AAGCTTCTATATATTCATCATTTTCACTCTGAAGC 2725647 28 100.0 35 ............................ CAATATACACCTTGAGCATTAACACTTCCCGACAA 2725584 28 100.0 35 ............................ CATTAAATAAAGCATCATACTTAGCTTTAACTTCA 2725521 28 100.0 36 ............................ GTACGTTTTTCCAATGTTGTTGTAAGATTTAATATT 2725457 28 96.4 36 .......A.................... GGAGAAGTTATGGATGTAATTGAAAGAGGAAGCACA 2725393 28 96.4 36 .......A.................... AATAAAAGAAAAGCTCCAATTGGTAATTCGTTAAAA 2725329 28 96.4 36 .......A.................... ACTATTACATCTAGTGCAACAAATATTCTGGCTTCA 2725265 28 96.4 36 .......A.................... TTAAAGAAAAGTAAAATATGTAAAGATTATCTTTAT 2725201 28 96.4 35 .......A.................... ACTAAAAAGGTTAAAAGTGTTAAAGAGCCTATACG 2725138 28 67.9 0 .......A......TATT...A.CG..G | ========== ====== ====== ====== ============================ ===================================== ================== 23 28 97.8 36 GTTTTATCTTAACTAGAGGAATGTAAAT # Left flank : TAAACATTTGATAAAAGATGAAAAATATAAACCGTTGAAAGCTTGGTGGTAATATGTTTGTAATAGTAACTTACGATGTTAATGAAAAAAGAGTAAACAGAGTTAGGAAAGTATTAAAAAAGTATATAACATGGTGTCAAAATTCAGTTTTTGAAGGAGAAATAACTGAAGGAAAATTAACAAAATGTATGGCAGAAGTTAAAAAATATCTAATAGATTCAGAAGATTCACTATATATTTATAGGATTCCTTATAGTAAAAATATAAAGAAAGATGTTATAGGCGTTGAAAAGAATTTAGATGAATTATTTTTATAATTGCATTAAGCGATTTTTAGTATTAAATCTATCTCAAGGCAGTTGTTAACAACGGTGTAATCAATTTTATTTAATTATTAAAAATCACTACTATAGCTTTACTGCAAAAGTTTATGCTATAATATAAAAAGATATAAGCTAAGATGGCTAATATAAAGGGTTTAAGTTATGTGTTTTTTCGGG # Right flank : CTATTTTTTCCTTCCTTAATAAGGTTCTCCATTGTGCATCTATTACAATAAAACGTTATTACAGATTCTAGACGGATGATCATATTTGTTACAACAAAAGTATAATTTATACACATTTGACCTTCTTTGTTTTCTAATTTCACAACAACTCTGCGATTTTTAGTTAATTTCTTTGCGTTATACATGAATTTGCAATATATGATATTATGTTAATACATGTTCCTTTTTTATAATTATTCCATAATTAATAAATTATTGATAATATTTATACAATATTGCATTTGCTTTTAGTCTTATGGTATATTTAGCAGCATGTTCTTCAGAAGCCTTGTAAAATTCTGGTAGAGAAAAACCGCTATTCCCATGAATGTATAGTCTATATAACTATATTTATTTGAGTATATTTTTAGTAATGGATCAATAAAAGCCACTGTTGTTCTTAATTTATAAACATTCCCAGATCTTAATTATGCTTTTAACAAATCACCTGCTAATCCATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTAGAGGAATGTAAAT # Alternate repeat : GTTTTATATTAACTAGAGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //