Array 1 1010304-1011430 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022419.1 Klebsiella sp. STW0522-44 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1010304 29 100.0 32 ............................. CAACCTAATTCTGCAACCTGGTTTACGTGCGC 1010365 29 100.0 32 ............................. GATTGAACGATCCCCGCATCCAGGCGAGCAGG 1010426 29 100.0 32 ............................. ATTGCAGATGTAGAGAAAAAGTGTTGACAGTA 1010487 29 100.0 32 ............................. GCTATGAAGCAAAAATGCAGTCTATGGTGAAT 1010548 29 96.6 32 ............................T GTACGCGAGTAGTCTATTTATTGATGCGTCTC 1010609 29 100.0 32 ............................. GGATTTCAGGCATAAAAAAACCGCCTTCAAGG 1010670 29 100.0 32 ............................. CATTATCGCCACGGTTGAGCAGGACGAAACGG 1010731 29 100.0 32 ............................. TGAATACTATCACCGACCCATTAGGCCAAACG 1010792 29 100.0 32 ............................. GTTCGTCCGGCACTTCAATATCTGCTGGCTTA 1010853 29 100.0 32 ............................. GCAATAAATATCACGCTTACAGCGCAGCATAT 1010914 29 100.0 32 ............................. TTCCCACCTGACGACGGGCGTTAGGCCCGTAA 1010975 29 100.0 32 ............................. CGGTCGCTCTTCTTTTCCTGCTCCTTTAGAAT 1011036 29 100.0 32 ............................. CTGATTCTGGCGTTGCTCATATCGCGCAATGA 1011097 29 100.0 32 ............................. TCGCGCCTTATTTCGTGAAAGTGGAAACACTG 1011158 29 100.0 32 ............................. ATAGTAGTCTCTATAGCGTGGATAACCGAGGG 1011219 29 100.0 32 ............................. CGCTAACGTTCGTCGGCTTTTCCGGTATCTGT 1011280 29 96.6 32 ............................T AAAAATATACAAAAAGGGATTGTATTGAGGGC 1011341 29 100.0 32 ............................. CAAGCTGGTCTGAACGGTGATGCTTTCATCGG 1011402 29 75.9 0 ............CC.....A...GGGT.. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.4 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTACCAGTACCTGCAAAAGCACGGCCTGAAGTACCATCCGCTGTGGGATCAGGGCTATCTGTCGGTAGGCGATACGCACACCACCCGCAAATGGGAGCCGGGCATGGCGGAAGAAGAGACCCGCTTCTTCGGGCTTAAGCGCGAGTGCGGGCTGCACGAAGGGTAATGACTCTTTACTCTATTTAACGCCTCTTGCTGTATAGCCGGGGGCGTTTTTATTTGTCAGCAACATGTCTCGATACAGATGGCATCTGCAGAAATAATCATATCAGGGATAAAATAGCGTTAGCAGTTCGGAGTAAGCAGATTCGCAACTCTCACCATCTTGGTGAAAGCTTGAGATACCCGATAAGAAGGTTTTTCGGTGGAATGTGAGATGCATGATAATGATTTTTTTAGTCTTTTAAAATCAATGTGTTAATTTTTGCTTTTGAACTCTGAAAGTTGGTAGAAATTAAAGCGGTATAAAAATATAATGAATTCAATTGGTTATTTTTAGA # Right flank : GAAAGGATGGGTAATTATTCACGCCTCAAATGATTTGGTAAGCATTAATTATAATGAGTCGGTTATTGAGCTATTAATAATAGGCCTTATTACCTGGGCAATACGACTTTAAATGCCATAAAATCACTTTTTCTTTTTGCTAGTTACATTGTAGATGATTAGCATATCCTTTGTTATATATGGTTTAACTATATAGATAAATTTTGTTTTGTGACGATAAATAATACACATCTATTAGTCATATTGAAAAATAATGTAATAGGATGTTTTATATAATGATGTTTTGAGGTATATCAAAAAATAAATATATGAGTTGCCCAATATAGGCAGATATTCTTGTCACCAACTTGAGGCTTTTGTGACGATATTTAAGTATTGGGGAAAAAGCGCACGTGGAGACAAAAACGGTGGCGACGATTATCACCTGCTGTGCTGGCACTCGCTAGACGTTGCTGCGGTCGGGCATTGGATGGTAATAAACAATATTTATTGTATCGACA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1020340-1021407 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022419.1 Klebsiella sp. STW0522-44 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1020340 29 100.0 32 ............................. GACGCAGTAGGCGACCATACCCACAATGAAAC 1020401 29 100.0 32 ............................. GTAGCAATGCATAGAGTATAACGAGGCTCCAG 1020462 29 100.0 32 ............................. AGCCCGAGTGGTAACGACCAGGCACCATTTAT 1020523 29 100.0 32 ............................. GAATACGCGCCAACATGGACTTTTTCGCCTTC 1020584 29 100.0 32 ............................. CCGCATACATCGAGCTGGTGGGGGGTGATGAT 1020645 29 100.0 32 ............................. GGGGCGAAGCATAACCCGTTAATCGTTCAGAT 1020706 29 100.0 32 ............................. GCGCAATTCTTCGTCAATACTGCCGAGGGCCA 1020767 29 100.0 32 ............................. TTTTCCTGCATGCGCTCATCGTTCCGGCCTGC 1020828 29 100.0 32 ............................. GCAGCAAAGACAAAGCAGCTACGCAGTCTTAC 1020889 29 100.0 32 ............................. TTGTAGTAGCCCTGGACGGTCTGCATGCGTAC 1020950 29 100.0 32 ............................. CAAAAAAATCCCCGACTTTCGCCAGGGATTCA 1021011 29 100.0 32 ............................. GTTCTATTACTCCCGTTAATCATAATCGCATC 1021072 29 100.0 32 ............................. ATTCGGCGACCTATCGTTTCTTTTCCCATGTT 1021133 29 100.0 32 ............................. CGTTCCCAGCTCGGAACTCGTATCCGCGCCTG 1021194 29 100.0 32 ............................. ATCGTGGATATGTCAGAATCCGTGTTTATGGG 1021255 29 100.0 32 ............................. AAATAGTAAAACGCGCAATTAATACTGGTGAT 1021316 29 93.1 32 ................T...........T GATCTGGATAATCTGGAAAGTTTAAGAAACCA 1021377 29 93.1 0 .......T.................G... | T,T [1021390,1021403] ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGATCCCCCGCAGCCCGCGCCAGATATGTTGCCACCTGCAATACCGGAGCCTGAATTATTAGGCGACGGCGGTCATCGAGGGCGTAGTGGATGAGTATGGTTGTTGTGGTAACGGAAAACGTTCCGCCGCGTCTACGAGGGCGTCTGGCTATCTGGTTGCTGGAAATCCGTGCAGGTGTTTATGTAGGTGATACCTCAAAGCGAATTCGGGAAATGATTTGGCAACAAGTCACGCAATTGGGCGGAGTGGGAAATGTTGTGATGGCCTGGGCGACAAATACGGAGTCCGGTTTTGAGTTTCAAACCTGGGGTGACAATCGACGTACTCCGGTAGATTTGGATGGAATCAGACTGGTGTCTTTTCTTCCTGTTGATAATCAATAGGTTGAGTGTTCTTTAATAAATTGGAATTGTTGCTGATAAGTTGGTAGGTTGTTTCTTGGTAAAAAATGTAATAGAAAACAGTTATATACGTTTAGA # Right flank : GTTAACAGCGGAGTGCCCCCAGGGTGTAATGCGAAAAAGGTCAAGCAGGGCGCCTGACCTTGATAGTATCAGCTGCGCGCCTTCGCCAGCTCGCGCATCAGCGGCATCATCACCCGTACTACTTCACGGCTGCGGCGCTCAATACGCCCTGGCAGCGCTTTATCGAGATACTGTTGATTATCGATATGGGCGTTGTGCCAACTGGTGCCATCAGGGAAGCTCGCGCTCTTCGCCCGCTGCTGGTAGCCATCTTTTTTACCGAGTGACCAGTTCGTTGCCTCAACGGACAGCACCGGAATTCCGGCTTTATCGAAAATCTCGGCGTCGTTGCAGCAGCCGGTTCCTTGCGGATACTCCGCATTCAGGCCGGGGTTGGTTGCCGCCGCAATACCGCGGCTGTGGGCAATGGCCAGCGCGCGGTCGCGGGTCAGTTTACGAACCGACGCGGGGGTTTTTACGCCACTGTTGAAATAGATTTTATCGCCGACCACCAGGTTATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //