Array 1 3520456-3523662 **** Predicted by CRISPRDetect 2.4 *** >NC_016633.1 Sphaerochaeta pleomorpha str. Grapes, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3520456 32 100.0 35 ................................ AATGACCATCACCCAATAGGAACAACACCAATGAC 3520523 32 100.0 36 ................................ CTTTACGGGCAATGTGCTTTGATCGATATGCACATA 3520591 32 100.0 35 ................................ CACGTCCAGTGCTTGGAGTGATTACAAAGGTACGT 3520658 32 100.0 34 ................................ CTCAGCCGTTATGACCGAAGATGTTTCACACGAA 3520724 32 100.0 33 ................................ AACCACCAAGCGTACCAATCATTAAAATAACTA 3520789 32 100.0 33 ................................ AACCACCAAGCGTACCAATCATTAAAATAACTA 3520854 32 100.0 35 ................................ CGCGCATTGCACCCGGTGAACTGGACAACGAAGAA 3520921 32 100.0 33 ................................ CACATATTCGTAAATGAGGCACTGCTCAGGACC 3520986 32 100.0 35 ................................ ACAACTACCAGGTGTAGCTATAACGCTCAAATACT 3521053 32 100.0 36 ................................ ATCGATTACGAGGGGTCTGTCACTCTCAAAAATGAA 3521121 32 100.0 36 ................................ CACCTTTTACCCTGTCGGTAACCGCACCAACTCCAA 3521189 32 100.0 34 ................................ CCGTTGATCAGATAGAAGAAATGTTTTCCCGCAA 3521255 32 100.0 34 ................................ ATCTCCACAGAATCGAAAGGTTGAGGTATCTCGT 3521321 32 100.0 35 ................................ CGCTCGGTGACATTGTGTTGCAGGGTGATGATATC 3521388 32 100.0 34 ................................ ACCATGTGGGCGCAGGATATCGCTTTTACGACTA 3521454 32 100.0 33 ................................ TGTGCTCTATTAAGGACAAGGAGTTAACAAATG 3521519 32 100.0 33 ................................ ATTAGAAACAATGAATCCGATAGCGGCGGCAGT 3521584 32 100.0 34 ................................ AACGGATTGAGCATATATCTGCATCCAATGAGTT 3521650 32 100.0 34 ................................ CAGTAGTCGTCAATGCTATCATAGTCATATGCGT 3521716 32 100.0 35 ................................ CCCGATTGGAACATATCTAAGTTGGCAGACGTTCC 3521783 32 100.0 36 ................................ GCATCAAGAGAGATAAAGACAGAGCACGACCGCCTG 3521851 32 100.0 34 ................................ TCGTACCAACCGGAAGTGTAGTGAGCGTCGTATG 3521917 32 100.0 33 ................................ CATCCATAATCAACAAGGTTTCCGAGATTCTAA 3521982 32 100.0 34 ................................ GATTTATCAGATGGATTGGAAATGCAGACTGATT 3522048 32 100.0 33 ................................ ATGGGCATCCTATGATGTCGGTGGTTTGATAGA 3522113 32 100.0 34 ................................ TAAAGTACCCACCGCCACCCCCGGCAACCTTGCT 3522179 32 100.0 34 ................................ CTGCTACTACAGCGGCTATTAGATATCAACATGC 3522245 32 100.0 36 ................................ ACACAATCCTATGTGATTAAGCTAAGCAATTTTGCA 3522313 32 100.0 33 ................................ CAAGTGTTGGGAATTTTTTAGCATTCAAGGTAT 3522378 32 100.0 35 ................................ TCCACACTATCACTCAACTGGAAGGTGAACCATGA 3522445 32 100.0 32 ................................ GCATTAATGAGCAAAGGGCTAGGCAAGAAATT 3522509 32 100.0 34 ................................ CAGCCGGATATCACCAGCGAAGCAGAGACTGTTG 3522575 32 100.0 36 ................................ ATATACACCGCAAAAATTAAATGGGATTATTTTTGT 3522643 32 100.0 33 ................................ TAGCTATGTAAGATAAGTGGTATAGTGCGAAGC 3522708 32 100.0 37 ................................ AATGGGTACCATGCCACCAAGCCTTGCGAGACGTGAT 3522777 32 100.0 34 ................................ AAACTGGTGGATCGGATAGGCGCTGGGCTGAATA 3522843 32 100.0 33 ................................ CCTGTATCCTTGGTGTTTACAGACCAGATGAAA 3522908 32 100.0 33 ................................ TTGTTATTAACAGGCATATCATACCCTCCGTTG 3522973 32 100.0 35 ................................ AAACAAGTTGTGGATGAGATACCAGGAGTAGATAC 3523040 32 100.0 35 ................................ GGTAGCAACCCCAGAAATGAAGCTACTCTACGATA 3523107 32 96.9 35 ......................A......... CCCACATTGATATTTCGGGGGTTTGCGAGTGGAAA 3523174 32 100.0 34 ................................ CAGTCGAACAAGATACCGGCGTTGGAACTTGAAC 3523240 32 96.9 34 ..T............................. CCATTGTAGCAACGCAATCATCCCCGACACGCAT 3523306 32 96.9 32 ..............A................. CTGTACAGCCGGAGACAGCTGTTCCTGCTCAC 3523370 32 100.0 33 ................................ TTGCTCAGACTTGAGAGCATCTTGTAACTTCTG 3523435 32 100.0 32 ................................ CGATGGCTATGACGGTAGAAGAAGAGTTGTAT 3523499 32 100.0 33 ................................ CCACTTGACACTCGATTGTGCGCACTATATAGG 3523564 32 100.0 36 ................................ AAGAACCAGATCGAAGCAGCAAAGGTTTTGGTCAAC 3523632 31 78.1 0 .....................-.GG.G.GTG. | ========== ====== ====== ====== ================================ ===================================== ================== 49 32 99.4 34 GTCGCACCCTTCACGGGTGCGTGAATTGAAAC # Left flank : CTGGAGGTAAATCATGATGGTTCTTGTCAGTTATGATATTATGGTTTCGAGTGAGGATGGACCTAAGAGGTTGAGAAGAATTGCAAAAGAATGCACAAATTATGGGCAACGTGTTCAGTTTTCTGTTTTTGAATGCATTGTGGAGCCTGCCCAATGGATCTTCTTGAAACATAAGCTTGAGTCAATCATGGATAAAGAGAAGGATAGTTTGCGTTATTACTATCTTGGAGCAAATTGGACGAGAAAGATTGAGCATGTTGGTGTCAAAGAATCAATAGATTTACAAGGCCCAATTATTGTTTGATATTTCAAAGAAAATGATTTTGCGAACCCTAAGCATACATAAATTACCATTAGGTTCGCAAATTAATTAATTACCTATAAGTTAGATATTTGAAATTTTTCAGCGTAGGATATGACATCTAAAACTATCCTTGTTTCCAACGTTCGCAAATAAGTAGTTGTAATTCCATTTCATGTAATATAATATTTTTAGTACC # Right flank : CGTGGGGGCATGGCGCGAGCAGTAGTATTAACTGTCCACTAAAAAAAGGACGAGATGCAGAAAAAATAGAATCCCATGGGAACCGTGCTATCTTTGGTTTAACCACAAATCAAAAAACACACGGAGACACCATGGGACGTAGGAATCTTACACTGGGAAAGCACTGCAGGGGAAGCCATTTCTCTTGGGGCGAGAGGCTTAAGCTGCAATACTACTTCGCAGGTAGCAACGGATACAGAAAAGAGCGAAGCCCTACGGTACTGGGAATGATTTTCCAGAAGAGCGCCAAAACGATAGGCAGGGAACTGCAACGGGGTATGGTGGAGCATGTGCTCGGAGAAATCCCGTTTTCCCGGGCGGAGTACAATGCGGACCATGCCCAGATCGATGCAGAGGAGAAGATGAAGTACAAGGGCCCGTTGCCCAAGTCGGGCAGGCACTACGCACTGGTGCAAAGGATATCACCCCTGATCCTGAAAGACAAATACAGCCCCTATGCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //