Array 1 162487-160705 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETQ01000009.1 Salmonella enterica isolate STY127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162486 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162425 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162364 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162303 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162242 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162181 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162120 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162058 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 161997 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 161936 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161875 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161814 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161753 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161692 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161631 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161570 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161509 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161448 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161386 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161283 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161222 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161161 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161100 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161039 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160978 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160917 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160856 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160795 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160734 29 96.6 0 A............................ | A [160707] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16563-15070 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETQ01000047.1 Salmonella enterica isolate STY127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16562 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 16501 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 16440 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 16379 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 16318 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 16257 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 16196 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 16135 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 16074 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 16013 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15952 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 15891 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 15830 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 15769 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 15708 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 15647 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 15585 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 15524 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 15463 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 15402 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 15341 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 15280 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15219 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15158 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15097 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //