Array 1 33733-32112 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJWG01000006.1 Clostridium prolinivorans strain PYR-10 scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 33732 30 100.0 35 .............................. TTGGAATATTTTCATAATTTCTGAGCATAATATAA 33667 30 100.0 36 .............................. CTTGGCAAAACATAAAAATCAACTACTGCTGTGTTG 33601 30 100.0 36 .............................. ATCATCAGTTTATTTGTATAAGCCTTCATAGCTTCT 33535 30 100.0 35 .............................. ATTGGAAATTATCTTTCACAGTATTCAGGCAACTT 33470 30 100.0 37 .............................. TCTTAATCACTTAAGAGTATCTAAGATTTTAGGCAGT 33403 30 100.0 37 .............................. TAACATCCCCTTTGTTGATAGTTGTTGATAGAATTGT 33336 30 100.0 36 .............................. TTCTCTCTTTGCTTTCCACTTAGCTGTTTTGTAGAA 33270 30 100.0 37 .............................. CAGAGAAATCGAATATTATAACGGAAAAGTAGAAGAT 33203 30 100.0 36 .............................. TATGAAACAACCACAAACTTCAATTTCTAATCCCTC 33137 30 100.0 37 .............................. TTGTACAAGGTGCTAATAGTTATTATTAGTTAGTAAT 33070 30 100.0 36 .............................. ATACTGGTATTGCAAGCATAGGACAGGAGGCAGGAA 33004 30 100.0 37 .............................. AAAAAAATGTGACCAAATGAGTGTAATTGCTTCATGT 32937 30 100.0 35 .............................. CTGTATAAGCATTTTGCATTTCAATGCTTAATATT 32872 30 100.0 37 .............................. ATGCTGTATAAGGGGGGAAAATAATAATATGGTATAT 32805 30 100.0 37 .............................. ATTGCCACTACAGAAATAATCATATTAGATAGCATTA 32738 30 100.0 37 .............................. GCATTTAGGTGACAACTAACGAATAAATCAGCCTTAG 32671 30 100.0 37 .............................. AGTAACTGTTTTAACATTTATTTTTCCTCCTTAATTA 32604 30 100.0 36 .............................. AGGTCGTTTGTTACTGCCCAATTTATCACGTCAATC 32538 30 100.0 37 .............................. TTAAAAGAAAATGGAAATAAAATCAAAAAAACAGTCA 32471 30 100.0 36 .............................. ACTATCAACGATGATGATAGAAAAAATGGAATGACT 32405 30 100.0 37 .............................. ATAGACTTAAGATATTTTTCAACATTTTTATCTGATT 32338 30 100.0 36 .............................. TGTTTCCAGGAAAGTTATCTTAGCACTTCTTACCGG 32272 30 100.0 36 .............................. TCTTTTATATTCGCGGTGTCTATTGTTGCATTAGCA 32206 30 96.7 36 .............................A TTTTAATAACTAATTGGTTTAGCTACTGTACCTCAA 32140 29 83.3 0 ................C.A...-.....TT | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 99.2 36 GTTTAATCTTCTCCAAGATGGAATTGAAAC # Left flank : AATAAAAAAGAACAAGGATTATGGGTTGAAGCAAAGGATTTATTAGTAAATGTTAGGTATAATTTAATATTTGATAAAATAACAAATAAAAATGATGAAAATTCTGACGTAATAATAGTAGACTGTAAATATGATTCAGAAAGGGGTTTATTAACTGAAGAAAAAACTTCTAATTTTATAGGATTGGATTAAAAATAACGGTCAAATGGAACTAAATCTAAGATTAATATGTGAAAATAAAAATAAATGATTGAAATATACGCATAAAGACTATTGTGAGAAATATAGAATTTAATAGACGAATGTATGAATAGAATATAAAATTAATTATGAAAAAAATTATAAATTTTTATTTTCAATATCTCTATAATGTGGTAATATAGGATATATAATGAAATAAATTTATAAACACCCCCTAGTTTTCTTAACAACCATAGCTTTCAGAAAATATACATAAAATGAATACTCGGAGGTGTTTATTTTAGCGGCTTTACGTCGGT # Right flank : AGTTGGTGAGTTATATATAAAAGAAGATAAAAAGGGATCATATAATTTCAATATGATCCTTTGTATATTTTTTATTTTATTAAAGAAAAATTTAGAAATGAATATTTAAAAATAACAATCAAATCCATTTTTTAGAAAGATATTTTTATAATCTATTAAATCTTCTTCATGAAGCTGCTGAATATTTTGAAAAGCATATTTTTTATTTAAAAACTCATATTTTTTCTGCCCAAATTGATGAAATGGGAGAAGATTTACTTTTTTAGCATTGATAGATTTAAGTAATTTACAAAATTCTTCAGCATCTTTTAAACTAGAGTTTATATTTGGTATAACAGGTATACGAATAATAACTTCTTTTTCCATGTTTATAGCAATTTTTAAATTTTCAATAATTAAGTCATTATAAACATTTGTAGCTTTAAAGTGTTTTTCTCTATCATAATGTTTCATGTCAAATAATAGTAAATCAACATTTTCTATAAATTTTAAGAATATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTTCTCCAAGATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 42559-40729 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJWG01000006.1 Clostridium prolinivorans strain PYR-10 scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 42558 30 100.0 37 .............................. TGTTGCTGGTTACTTTCTATCTTAGAATATGTACTTA 42491 30 100.0 37 .............................. TTTTATAATTATGAATTAATGTCTTAAGCCACTGCGG 42424 30 100.0 36 .............................. TTTGCATAGTAGCTTGTATTACACTTAAATCTACGC 42358 30 100.0 36 .............................. TAAGTATGTTAAACATTATTTCATATTCTGCATTGA 42292 30 100.0 37 .............................. TTAGTTATCATATTGATAACCTTTCAATTACTATTAT 42225 30 100.0 36 .............................. TTACATAGCATAGATTCAACACCTTATTGCTTTCAG 42159 30 100.0 36 .............................. GCAATTAAGAAAAGATTTGAGGAAGTGCTAAATAAA 42093 30 100.0 38 .............................. AAACTGAAAAAGCTAAAGAATTTAGGGCATGGGTAAGA 42025 30 100.0 36 .............................. ATAAGTGATGGATTACCACCAGTAGGGGCTTGTATA 41959 30 100.0 37 .............................. TTAATCATTACTACTAATCTAGATATAGATCCGAAGG 41892 30 100.0 35 .............................. ATCATGCATTTTATTATGGCATGCATCACATAAGC 41827 30 100.0 35 .............................. TTATTTTTATTAAGCATATTTATATGCTTAATTTA 41762 30 100.0 37 .............................. GAAAAAAATCAAATTGAGATTGCGAATAGAGTACTAT 41695 30 100.0 38 .............................. TTTTATAGTGAAACATATCGTAAAACATTTGAACAACA 41627 30 100.0 36 .............................. TCTAAATACTTACTCCATTTCTTTTTACTGTATCTG 41561 30 100.0 37 .............................. CTGTCAAAGCTAAGAGCGCTAAGCGTAGAGGAATTAC 41494 30 100.0 37 .............................. GAAAAAACAATTAATTATGAAACACTTATTAAGGTTA 41427 30 100.0 37 .............................. TTATTACTAAAAAACATAATATCAGTGAAATTAGAAT 41360 30 100.0 37 .............................. ATATCAAGCATAAATTCGCACTTTTCAATCCTACAGC 41293 30 100.0 36 .............................. AAACAATACCAGTTTGTAGCTTGGTAAACAGTTCCT 41227 30 100.0 37 .............................. TTGAGTAGTTGTTCTTACAGTACCACCACCACTTGAG 41160 30 100.0 36 .............................. AAATTTAATTGATAGGGTAAATTGTTTAAGAAAGGA 41094 30 100.0 37 .............................. CCTATAAGACAAGCTATATAACACTTTTCATACCCCG 41027 30 100.0 38 .............................. GTAGAAGTAGTGAAAGAGAAGAAGCCACAAGAGCCCAC 40959 30 100.0 37 .............................. AATTGAGAATTGTATGTTAAATCAGGATTTAATTTTA 40892 30 100.0 37 .............................. TTAGTAGAATGACTGCTAAAATGCTGTACACTGTAAA 40825 30 100.0 37 .............................. TTCGTCCTTATCGTCAAGCTCATAAATAAAAGCCAAG 40758 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 28 30 100.0 37 GTTTAATCTTCTCCAAGATGGAATTGAAAC # Left flank : TAAAACACATTACAGGTTTAGAAAATTATGAAGGGTTTAAAGTTTGGTGGTAGTTATGTATGTATTATTAGTTTATGATATCGGAGAGAAGAGAGTTAGTAAAGTTTTAAAATTAATGAGAGGCTACTTAAATTGGATACAAAATTCTGTATTTGAAGGAGAGCTTACACAATCCCAACTTGTAAAAATAAAAAATGAGCTTAAAAAAATAATAGATGAAACAGAAGATTCTGTAATTATTTTTACATCACGAGATAAAAAATGGATATCTAAAAATGTTATAGGTAAAGAGAAAAATCCAGTAATAAATTTTATTTAATTTAGATAATATCATAAATTGTTCTTTTATCACTTGTAAATTTAAATACAATTTGGTAATATAGGATATATAATGAAATAAATTTATAAACACCCCCTAGTTTTCTTAATAATTAGAGCTTTCAGAAAATATACATAAAATGAATACTCGGAGGTGTTTATTTTAGCGACTTTACGTCGGT # Right flank : TCAAGAAACTAATATTGAATTTTTTTAAATTCTTCATGTTTAATCTTTTTAGAGGAGCATGAAAGTTTTTTAAAACAAGTGGAATCATCAAAAATTAAAATCATTTATTATTTATATTTATTAAATAAAATATTGCAAAATTATACCATATAATGTATAATTTTCGTAATAATTATCTTCATATTTATAATTATTATAACTAAGGTTGAAATTAGGAAGTGATTAAATGAGACTGAAAGTAAACTTAGAGCTTTTAAATGATAAAGCTATTGATATAAATTACAATTATTATATTACATCTTTAATATATAAATTTATTAGTAAGAGCAATATAGACTTTGCTAATACACTTCATGAGGAAGGATATAGTGCTGGTGGTAAAAAATTTAAATTATTTACTTATAGTACATTAATTTGTCATAAATATGAAATAAAAGAATCATACATTTTGTTTAAAGATATTATTACTTGGTATATAAGTTCACCTGTAAATGAATTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTTCTCCAAGATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA //