Array 1 93977-92599 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIG01000001.1 Phytoactinopolyspora halophila strain YIM 96934 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================== ================== 93976 28 100.0 33 ............................ GTTGGTAGCTTGGATCGCTGAGGCGATGGAAGA 93915 28 100.0 33 ............................ TCTTGCGATGGATTTTCAGGTACGGGGTTTTCC 93854 28 100.0 33 ............................ CCGTTACGGGATGCGGAATCCGACCCGTCACGG 93793 28 100.0 33 ............................ CCTCTACATTCTTAACAAGACTGACACTGACCC 93732 28 100.0 33 ............................ AGCAGGGGCCGGGAGCGCTGGTTCACGATGAAC 93671 28 100.0 33 ............................ GACGTGAGCCTGGTTCCCCCGCCAGGCCCCGTA 93610 28 100.0 43 ............................ ATCGACCATGAGACAACCGGGGTAGGGTCCGCTGGTGCTCCGA 93539 28 100.0 33 ............................ CGAACGCGCCCTAGACCACCCCGGCGATATCCA 93478 28 100.0 33 ............................ CAGACCTCGACACAAACGCAGACGACAAATAGT 93417 28 100.0 33 ............................ CTGTATTCTTGCTCAGTGAAAAAGAAGGACTTC 93356 28 100.0 33 ............................ CCAGAGGGGAATTCACCATGCGTACCACATTCA 93295 28 100.0 33 ............................ TTGCTCAAATCATCGACTTGTTGAGTGGATTAC 93234 28 100.0 33 ............................ GTCCTTATCAAAGAATCATTTTCACAGCCTTCT 93173 28 100.0 33 ............................ CCAGGATCTGGCGCGCATCCTGCAACGCAACCC 93112 28 100.0 33 ............................ GCGCCCCTTTCGGGGTAGACGTGTGAGATGGGA 93051 28 100.0 33 ............................ TCCGACGATCGCCGAGATCCGGCGAGCAATGGG 92990 27 96.4 33 .................-.......... GTTCGACGTGGACCCCGATTACGAGTACCAGCA 92930 28 100.0 33 ............................ GCAGCTTTTGGGGTGGAGGCTGTCGGTATCGGA 92869 28 96.4 33 G........................... CTCACGCGACTTCTGGGAGCTGCGGATGATAGC 92808 28 100.0 33 ............................ TGTCGCCCGCCGATCTGGCTGGGTCGATCCCTC 92747 28 96.4 33 .....................A...... CGAATTGCGACCGGGGTTCGGGTACGGGTTGTG 92686 28 96.4 33 .....................A...... CGGCGCCACGCTCGACATCACCACCGAGAAGGG 92625 27 85.7 0 .....................A.T-..G | ========== ====== ====== ====== ============================ =========================================== ================== 23 28 98.8 34 ATGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CCGAGCACGCCGAACTCTTTGGCTGGAGTGATGAGGAGCTCGCGGAGCGGCTCAAGGAGAAGCGCTCAAAGGTGACATTCGACATCGAGCCCCAGGGAGCAGGCGTGCGGGCGGTGAAGCTGACCGTGACCCACGATGAATTCGAACCCGGCAGTGCAATGCTCGAAGCCGTCAGCAAGGGGTGGCCGGAACTCCTGGCAAGCATGAAGACCCTGCTCGAAACCGGTGAACCCTTGCCCATGCTCGAACACTCGGGTTCGGACAGCTGAGAGACGCTTGAAAACGTCGGGCGAGGGGGCCGTCTGTATTCGATCATGTGGGATGGCCTGCCCAGAAGGTTGCCTGCGCGGCTCTCAGGCGTTCGTAGTCGTTGATCTGCAATCCTCTAGCTGGGAACGGGGCGATGTGTGTCTTTGTGCGTTTCACCGATGGTCCGACGACCCTCGACGCAAGTGACTCAAATTCGGTATTCTCCGCTGAATCGTTGCTGGTCAAGAAGT # Right flank : AGGTGTGGGGGCCAAGCGTGAGCGGAGCTGCGAGACCGGCGTGAGGACAGTCGATACCTGTGTCTGATCGCCGTGAGGGCTGCCCTGGGTCCTGAGGCGAGGTGACCATGATCGTGGGCGGAGAGCCTTGCACGGTGAGTCCACGTGGGAAAGCGCTTTTCGTGCTCGATCGACGTGGTTTCAGCGTGCACGGAAGGTGGTTTCAGCGTGCACGGAAGGTGGGTTCAGCGTGCAAGGGACGTGGACTCAGCGTGCATGGTCGGTGCTCCTTCGACGTGCAAGGCGCAACACCAGACGTATAGAGGTGCGCAGACAGAGCAGCCGCTCCACGGACGACGAAGCCATGGACAGGATCGACGAACGACGAGGTCACCACAGGATCGTCGGCGGAGAGGAGATGCTCGGCCGGCTCCATGGTTCGGTGGGCCAGTCGTCGTCGGAGCCGTGGTGAGGGAGCCATGGGAAGGCAGCCCGTCGCCGTGCAGGGGGCGGCTCCAGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 16793-22582 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIG01000031.1 Phytoactinopolyspora halophila strain YIM 96934 Scaffold28_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 16793 35 91.7 36 A.T...........................-..... CTTCGAGACCGGCGAGATCATGAACATCGAGGTCCG 16864 36 100.0 36 .................................... AACCGCGAAGCGGTGGCAGCACGGATGGGAGCTCCA 16936 36 100.0 37 .................................... CTGAGAGGGCTGTGGGACGGTGACCTCACCCAGAGGG 17009 36 100.0 36 .................................... GCAGGCCGCGTCGGAGGCGATCCTCGACACGGCACG 17081 36 100.0 36 .................................... TCGTCATCGTGCGTGAGCCCGTCGCAGAGGGCACGG 17153 36 100.0 37 .................................... CTCGTGATGAATATGGTCGAATGCTCAAGCTCAGAGT 17226 36 97.2 36 .....................G.............. GAGGTGCGATGTGGTCGCCACTGAGGCTGATCACAT 17298 36 100.0 35 .................................... GACCTGCTGGTCAACGGCGGCACGCAGCCGGACGA 17369 36 100.0 37 .................................... CGGAGATCGGGACGCTCACCGTCACCGACGAGGGCCG 17442 36 100.0 36 .................................... CAACTGCGCCCGCCGCCCGAAGACAAATCGTGGCTG 17514 36 100.0 35 .................................... CTCGAGCATCACTACTACCTCACGTGGGCGTCGCT 17585 36 100.0 35 .................................... CACCGAGTGCTGATCGAGCTTGACAGCGGCGGCGA 17656 36 100.0 35 .................................... CGTACGGCAACCGGGTGGAAATCGAACACGACGGG 17727 36 100.0 37 .................................... GGGTAGAATTCTGCGACGTTGTATTCGATCTCTCAAA 17800 36 100.0 35 .................................... CCAATAAGGGGGAACGCGAACGACTGCTCGCCCGT 17871 36 100.0 35 .................................... GACCTGCACATCACGAACATCCGCACTGGACAGCG 17942 36 100.0 35 .................................... TCGCCCATCCTGGTGTTGCCGCACGTGCGGATGAT 18013 36 100.0 36 .................................... TGCCTTGCAACGTGGACGTTCCGGAGCTGAAAGCGG 18085 36 100.0 35 .................................... AGCAATCGCAACAACATGGCCCTCACCCAGGCCGC 18156 36 100.0 34 .................................... ACCTGGCGGATCCATGCCGACTTCGAGGCCTGGG 18226 36 100.0 35 .................................... TCTCTTTCGCAATGGCCCACCAGTCACGCGTTGAC 18297 36 100.0 37 .................................... CGTCGTATACGCTCTTGCGCAGCAGCAACCGGCACGC 18370 36 100.0 36 .................................... AATGGAGCCGATGCGGTAGCGGTCACTAGCCAGATC 18442 36 100.0 35 .................................... CGCCCGTTCCTCGGTGACATCAACGACTTAAACGA 18513 36 100.0 35 .................................... GTAGGTGCGCATGATTCCTCCCCAAAGGTTGTGCT 18584 36 100.0 36 .................................... TCCGGCACAGCAAACGGCGGCACAGTTTGCTGATGA 18656 36 100.0 36 .................................... GCGCAAGAACTCTACGCGGCCTATGACTCCCTCCAG 18728 36 100.0 37 .................................... GGCGCTGCATACGGCCGGTTGGCTGCCCCTAGAGGAG 18801 36 100.0 36 .................................... GGCGCACCAATTTGGGCACGACACTTACGTGCGCAA 18873 36 100.0 36 .................................... TCGTACGAGCCCGCGTTGGCTGGCGCATGTCTCCTC 18945 36 100.0 36 .................................... CCCTCACCGGAGACCCCACTCATCACACGCACACAT 19017 36 100.0 36 .................................... CGCCGATCGCGATGCTGCTCCCGGAGGGGCAGAATC 19089 36 100.0 37 .................................... CGATCGCCTTGGCTGTCTGTCTCTTGCCGGCATCCCC 19162 36 100.0 36 .................................... GCGCGTTCGCGTGGCACCGTTGGAATACATCGTTGC 19234 36 100.0 36 .................................... AAATTGGTACAGGATTCGCGCAACTGAAAGACAAAG 19306 36 100.0 37 .................................... GGCTCCACCGCTGGTACGACGGCATCCCGCCCGGCGA 19379 36 100.0 37 .................................... CACACAATTCTGTGGCCCGCATCGCGACCCTTTCATC 19452 36 100.0 39 .................................... GACAGAAACGCGTGACTCAATATTAGCAATGAGTGTTTT 19527 36 100.0 37 .................................... GCGTATTTGTAGCCGCCATGAGCGGTTGTCCGAGCCA 19600 36 100.0 35 .................................... GCATCGGCACTCGCAGCGAGCACGGACGCGAGAGG 19671 36 100.0 36 .................................... TTACGGTTGATGGTCAACGTGTCCCCGCCGGAGATG 19743 36 100.0 37 .................................... AGGCTCGCCGCACGTCAATCTCGACTCGATCGAGGGC 19816 36 100.0 36 .................................... AGCCAGATCTCGCAATCTCCCAGGGTCGGCGTGATC 19888 36 100.0 35 .................................... TCATCAACCTGACCCCGCACGAGGTCCGCGTCATC 19959 36 100.0 35 .................................... CACCGCACCCGCGAAAACCTGCACATGCGAGCTGT 20030 36 100.0 36 .................................... GGGTGCTCGCCGCAGGTCGCCCCGGCCGGTCTACCT 20102 36 100.0 36 .................................... GATCTGGCCGACGTCGTCGGTCTGCCAGTCCTTCAC 20174 36 100.0 36 .................................... GCGCTGAGCGTGTGGCGGCTTCTCGCTGGTGACGAA 20246 36 100.0 35 .................................... CGGGTGCAGGCCGGTGTCGCCCCGGAACGCGACGA 20317 36 100.0 35 .................................... CACCCGGACGAGTCGCAGATGGTGATCCGCACGGT 20388 36 100.0 36 .................................... CACGGCGGCGCCTTCCTCATGATCGTGGGCAACGAC 20460 36 100.0 35 .................................... GACCTCGACGGCGTCGAGGCGTTCGCGCACGCACT 20531 36 100.0 35 .................................... CACAGGCCCTCGGAGAACGAGTCGATGATGTCGGC 20602 36 100.0 36 .................................... CCAGGCGACCACGCTGTCCGAGACGCCGGTGCCGGT 20674 36 100.0 35 .................................... CGAGGTGCTGTCCACCGCGTGGATCGCACGCCAAG 20745 36 100.0 35 .................................... GGCCGCCCGTCCCTGCGGGTCGTCGCGGCGCGGTT 20816 36 100.0 37 .................................... GGGCACCGCGCTCCTCGTGTACGTCCTCGCCACCTAC 20889 36 100.0 37 .................................... CGTTGGCGCGCCGGAGGAACATTCGCATGGTCTCACC 20962 36 100.0 35 .................................... GACTCGATCGGGACGGGTTCCTCCCCGGTCGGCTG 21033 36 100.0 37 .................................... GCGGTGGGAGACGAAGGACACGGTGTGTTTCCAGGAC 21106 36 100.0 36 .................................... CGCATACGACGGCGAATCCCCAGGCTGCGCAGCACA 21178 36 100.0 37 .................................... CTATCCGGAAAGGGGCAAAGATAATGAGTTGGCCTCT 21251 36 100.0 35 .................................... TTCGTTTGTTTCATCATGCGTATCATCCCTATTCG 21322 36 100.0 37 .................................... GTGAAGGATGCGACGAGGCTGTTGCTGGCCACCATCG 21395 36 100.0 35 .................................... CATCGATCGTGCTGCGCTACCTGCGGACGATGGCG 21466 36 100.0 36 .................................... GTGACACGACGCAGATCCCCTTTGGTGCGAGTGAGG 21538 36 100.0 36 .................................... GTACTCCGTGCCATCGGTGGCGCACATCCGCGGGCT 21610 36 100.0 36 .................................... GGGACGCCTGGCGCCGCACCGCCGGGGCGGCGCCCG 21682 36 100.0 36 .................................... CCCCCAGGCCCACACAATGAATACGGCCGCTCCGCT 21754 36 100.0 36 .................................... CCGATGGTGTCCGACGTACCTACGAACTTCCCGCTG 21826 36 100.0 36 .................................... GGCCCCTGAGGGCCGTCTCTCACAAGTGCTTAATTT 21898 36 100.0 35 .................................... CATGAGCGTATCTTTGGAGAGATTTCCATCTGCCC 21969 36 100.0 37 .................................... CCGACGGGCTGCAGATCACGATCGCGGCGGACCGGGA 22042 36 100.0 36 .................................... GCCGCTCTCCCGCAGTTTCCCCAGCGGGACGTACTC 22114 36 100.0 35 .................................... GCGGCGGTGAGCATGACGTTCTCGCGTGTCAGCTC 22185 36 100.0 39 .................................... AAGGCCAGCCAAGTTGTTTGATTGGGCGCGCCCTGTATC 22260 36 100.0 36 .................................... TTACTTCAAGAAGAAGTATTGTCCGTTCCATTGACA 22332 36 100.0 36 .................................... CTTGACCTCCCTCACCTCCGACAGGAGCGTGCCCGC 22404 36 100.0 35 .................................... GTGACGGACTAACTGACGATGATCGGGACGTGATC 22475 36 100.0 36 .................................... ACTGGTCTGTCTTTAAAAATGGATCGTACATTCCTT 22547 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 81 36 99.9 36 GCCGCAATGGAGTCCGGCCGTAGAGGCCGGAAAGAG # Left flank : CGGCGACCGGTGCTCAGCAACGCGCGACCCGCTCGGTGTTCGGCCAGTCTGGCCAGCGTCGTGACATTTAGGGCGGCGATTCCCGGTCCGGACTCATCTGAGCCTCGCGTTAGGGAGCGTCGAGCCCTAATACCGATTCTCCTATCGGGCACGATCAACGTGACAGGTGTAAGCGGATCGTCGCCTTTCGTTTCGGCGACCGCTTCATGCAGGCGCCGATATGCGTCCGCTCCGTATGCCGTTGCGCGAACATCGACCGCCATGCAGTTCCCCTCTCTGAGATCGTGTGCAATGTTCATCTCACGCAAGCACGAACGTCGGACAGAACTCGGCGGAGCGAGACTGCTGTATATCCCTCAATCCTTCCGTGTTGTTCCCCACCTTCACCTTTACGTCTCACGCGCGAAGTGTGCTGTACCTCTTGCCGCTGAGGAGCTACGCTGCCGCAACTCTGACGGCATAGATCGAAATTGTTTCAGAATTTGCGCGTATGGGTCGGT # Right flank : GGGCTCGCGATTTACGACCCTTCTGACCTGCAACTGTACCAGCTTGTGCGAGCACCTGCGCGCGGTGGAGTTGAAGAACCGGAGTAGGATCGCGGATGGGACGCCAAAGTGTGGGTGTGCCCTGGGCGCGAGCGCTTCCCGGTTCACGAGTAAGAACTGGACCGCTCGCATGCATCATACGATCTGAGATCCGCTTCCTGGAACCTCGCGTGCACGGCCAATCGAGCGAATATGTGCTGGTGAGGAGGTTGGGCCGAGATCGATTTCGATGATGCTGTCGTCGCGGAGGTGCATAATTTCTTTTGCGGCCGCTTCCAGCTCGGCGAGCTCTCCGGCAGATAGGTCGCACAAGAAGACAGAATACTGGAGTCGCTGCCCAAAGTCCTCCATCAGCTTGCATATATTACGCAGGCGCTTGGGATCGGCTATATCGTAAGCGATCAGATGCCTTCGTCTTGCCATGAGTTCACCGCGTGACCATGGCGGTGTAGTCGGGAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGTCCGGCCGTAGAGGCCGGAAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.80,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 2996-101 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIG01000045.1 Phytoactinopolyspora halophila strain YIM 96934 Scaffold38_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2995 29 100.0 32 ............................. CTTCAGCGCTTCTACGGCGGGGATCCGGAGCG 2934 29 96.6 32 ............................T GACGAGCCCCACTCATTACGGCGCCTAAGCCG 2873 29 96.6 30 ............................C CAGACGCCGTCGTTTTCCAATCGATCATCG 2814 29 96.6 32 ............................C TCCGTGTCGTTCTCCGATTCATCGGAGGCGGC 2753 29 100.0 32 ............................. CTGGCGGTGACAGCGGAAGACGTATCCCTAAA 2692 29 96.6 32 ............................A TCCGCGGCCGCGTCCTCGGCCATGCCGAACCC 2631 29 96.6 32 ............................C CTCCCGGAGGAGGTGCGGAACGTCGTCGAGGG 2570 29 100.0 32 ............................. GGCATGGGCCGCGCCCGGGACCGCCGCGTGGT 2509 29 100.0 32 ............................. ATGCCATCTGGTGGCTCGGAAAGCTGGAAGAC 2448 29 100.0 32 ............................. TCATCAGACGGTGCGACCAAGTCCAAGGACGC 2387 29 96.6 32 ............................C GTGAATCCATCGAGGTCACAGCGCACGATAGC 2326 29 96.6 32 ............................T ACGTCGCGGATGCCTTGCTGCATGGACAGTTG 2265 29 96.6 33 ............................C GGCGGCAACCTAGACGACCACGCGTTCGTCGCT 2203 29 96.6 32 ............................C TCGTCACTCCCAAGACGATCCAGCCCGCGAGC 2142 29 96.6 32 ............................T GCGCCAGCCGAGGTCGAGATCGGGTGGATCTA 2081 29 96.6 32 ............................C GATGTTGCCATCGTTTGAAACAGGAGAGTGGA 2020 29 96.6 32 ............................C AACAGGTTCCACTTACCCCACAAGGTGTAGGT 1959 29 100.0 32 ............................. ACTGTACAGCCTGTAACACACCGTCGTTCTGT 1898 29 100.0 32 ............................. GCTCGGCACCCTGAGGCACTCCTATTCAGCGC 1837 29 96.6 32 ............................T CTTGCCCGGATGTAGCAGAGGTTGCGGGTTGC 1776 29 100.0 32 ............................. GCGTACCGGAAGCTAGGGAGCGTGCCGGTCGT 1715 29 96.6 32 ............................T TCGTGTTGTCGATGTAGGTCAGGTCGAGCGAC 1654 29 96.6 32 ............................C GGTCGTGTACAGCTTCACGGCAGCGTCCGCGG 1593 29 96.6 32 ............................C TCGTCACTCCCAAGACGATCCAGCCCGCGAGC 1532 29 100.0 32 ............................. CCCGCCCACCTTGTCGGCCTCGGACTCCGCGT 1471 29 100.0 32 ............................. TACTGATCGCGGTAACGCAGCAGCCCCACTAC 1410 29 96.6 32 ............................T GGATCACACCTCCGTGTCAGGTGTCGGTCCAG 1349 29 96.6 32 ............................A GTTTCTCACCAGCGAGATATTTACGTATTGCA 1288 29 100.0 32 ............................. CGTCTTGAGGTTCTTCACGAACTCGCGTAACC 1227 29 96.6 32 ............................T CTTGTGGTCGCCGCTGGGCTATTTCCGCATCA 1166 29 96.6 32 ............................A CCGGCGGGCGAGCGCAGGTAGTCACGGTTGCA 1105 29 100.0 32 ............................. GTCGACGACCAGCTCGCGACGCACCCGAAGGT 1044 29 96.6 32 ............................T AAACTGGCCACCGCCAGCACCAACACCTGAAG 983 29 96.6 32 ............................T ATGCCACGGCCGAGAAAATAGATACGGCATTG 922 29 96.6 32 ............................C CCAATTTGTTAATCACGTACCACAATTCGTCA 861 29 96.6 32 ............................T TGAAGAAGTTCAATCGGTAGCAATTGAGGCGC 800 29 96.6 32 ............................C TACGTCAACCCCCGGAGGTTACAGACCACAGC 739 29 96.6 32 ............................T GATGAAGATACTTGACCTGTATTGCGGTGCAG 678 29 96.6 32 ............................C TCGGCGCTGGTGGGGACGAACTTCGCGAGCTC 617 29 96.6 32 ............................T CACATGCCGTCCACGTGGCGCAGGTGCTCGAC 556 29 100.0 32 ............................. AACTCGATCAGCTCGGCCACAACGTCGACCGG 495 29 100.0 32 ............................. ATCGCCAGTGTCTATCAGGGCCACCGCCGGAT 434 29 100.0 32 ............................. AACTCGCTCTGGGAGGCGTGCGGGTTGATCCT 373 29 96.6 32 ............................T CGTAAACGTGTTGGGGCAGGAACTGAATTAGA 312 29 96.6 32 ............................T TGCTTGAAGAAATTGCTATTCTTGGTCGACAT 251 29 96.6 32 ............................C GCTAACAGTTCTGGAGCTGAGCGCTCTCCGGG 190 29 96.6 32 ............................T TCTCCATTCTATGGAAAACGACTCGCATTCTG 129 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 48 29 97.7 32 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : CCGGCGCGTCCATGGCAAGTGATCTAATCACTTGGTCACTGGTATTGGCAACCCGAACCGCGCCAGAGATTTGCCCGCATGGGCATGCCGAGTGACCGCCGCGATCGCGCTAGCAGGAGCGCATGCCGCTGTCGACGCCCCGGTGGAGGACGCCATATTCGCTGGGTGAGGTGGGTGCCGACGCGAAAATGTTCCGCAGGCTGCATCAACGACGACGGGTATTCACACTGCTAATCTGACTCTGCAGGAGCAGCTACTTGAGAAATGAAGAAGATCAACGTCGATCTGGCAACGTCGACGGTGCCGAGCTGACACCCTCCGGCGGGCGCCAACTGACCCCGGCACGACAGCCCAGGCTTTTCACGCCTTCAGGTATGTCACCGACGGTTGACCATCATGCCAAGGTCGGGCCATGATCCGTAGCTGTACGGGTCAGTCCCTCCCAACACAGACTGACTCAAAATTCCATGATCGGCGCATAACGCACCAGGTCAAAAAGG # Right flank : CTCGTGCCTACTTCGCACGCTTGGCCATGGAGCGTGCTGGTCAAGTCCCCCGTAGTGGTGTAGCGCGGTGTCCTTCGGTTTGGTGTTAGGCGCTGAGTGCG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 67-707 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIG01000042.1 Phytoactinopolyspora halophila strain YIM 96934 Scaffold35_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 67 29 100.0 32 ............................. AGCTCGATGGTCCGCCTAAGAGCAGAAAAAGC 128 29 96.6 32 ............................A TCGCGATTTGTGGCAGCCAACACGCGGATCCA 189 29 100.0 32 ............................. CATGGTTTGTCGAAATCTGAATATGGCATGTG 250 29 100.0 32 ............................. CACCGGGACCGCAAGCACACCTATATGCGCAC 311 29 96.6 32 ............................T CCCAGCGAGGGGTGGGGGAGAAGCAGGCTGCC 372 29 93.1 32 .....................G......C ACTTTCCCCTGCGGTCACAGGCACATCCCGCA 433 29 89.7 32 .............G.......G......C ATGACGGTGCGGCAGGACCTCCACTTCGACGA 494 29 96.6 32 .....................G....... TCGACCAGGTTCCCCGCCGTCACGCACAGCCC 555 29 86.2 32 .....................G....GGA AGCGGATAGCGCGCTTTATTGGGACGATCGCC 616 29 96.6 34 .....................G....... ACGGAAGATCCCGCTATCGCGCCTGGTCGGCACC 679 29 75.9 0 .....T..T...........AG.AG.G.. | ========== ====== ====== ====== ============================= ================================== ================== 11 29 93.8 32 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : GACCGCGCCTACGTCCGCGACGAGGCTGGCCACCAGCGCTACACCACTCTATGGGGCACTACTAGCG # Right flank : GCGCGTGTGTTGCCCGCGCTGACGCCAGATGTAAATGCGCGACTAAGAGCATAACGTGAAGCGTTAATAACGCAGAGCGTTATAGTGCTATCGTGCTGCTCTCGTTCGGCGACAAGGACACCGAACGCGTGTGGAACAGACTGCGCTCACCACGACTCGATCCAACCCTCCGACGTGCTGCGCCACGCAAGCTACTGACCCTTGATGCGGCCGAGACGCTCGCCGATCTACGGATCCTGCCCGGCAATCGGCTCGAGCAACTACGTGGAGAGCGGCGCGGCCAGCACAGTATTCAAATCAATCAGCAGTGGCGAATCTGTTTCCGTTGGACTCCGGCCGGGCCGGAAGACGTGGAGATCGTCGATTACCACTGAAACAGGAGGAACCATGACAAGCACGGACACCCCAATTCACCCAGGCGAGATCCTTGTTGAGGAGTACCTGAATCCCATGGGATCAGCCAGCACAAGCTGGCCGTTTCGATCGGCGTTCCACCGCGG # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : GTGCTCCCCGCGCACGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9841-11518 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIG01000042.1 Phytoactinopolyspora halophila strain YIM 96934 Scaffold35_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9841 29 100.0 32 ............................. GACCGGCAGTCCTGCTCCTGACGGCCGACGCC 9902 29 100.0 32 ............................. CGTCCAACGAGCGTCCAAGTATCGTCCAATCG 9963 29 100.0 32 ............................. ATCACCCCTCAATAGATCCACCCCTGAACTGG 10024 29 100.0 32 ............................. ACCTCGATGCCGGCGGCCGCCTCGTCGAGCCC 10085 29 100.0 32 ............................. GTCCCGACCATTGCTGACATCTCCGCCCCAAC 10146 29 100.0 32 ............................. GATCTGAAGAAGCTCGACCGGGAGCTACCCAA 10207 29 96.6 32 ............................A CCGGCCTGGTCCTGGAGGTTCGCCAGCGCCTC 10268 29 96.6 32 ............................C AGCAAGGCCGCGAAGCTGCTGACCGCCGTCGA 10329 29 100.0 32 ............................. CGGGCGGGATTGCCACGAGGCAGCCAGCCCGG 10390 29 96.6 32 ............................C TCGTCCGAGCGCTGAACATCCACGCCATACAG 10451 29 96.6 32 ............................C GAGAAGGCCCACGCCAAGATCATCAATCTGGA 10512 29 96.6 32 ............................T GTGCGTACCGGGACTGGCGCGCGCCCGCGTGC 10573 29 96.6 32 ............................A CAGCGTCGAATTGGTTCCCTCGCCGCCTGTCA 10634 29 96.6 32 ............................T GTTGAACCGAACGCGGTTCAGCGTGGCCAGCC 10695 29 100.0 32 ............................. GCGGCTGGTGGAGGTGGTCGCGTGAGGGGCAT 10756 29 100.0 32 ............................. AGGAGATGGTCGAGTCATATGCGCAGGAGAGA 10817 29 96.6 33 ............................C GCGGACGCTTAGATGACAGTAAGCCACACCGGC 10879 29 96.6 32 ............................C ACCACTGGGGAGGATGCATGATCCAGGATGAG 10940 29 96.6 32 ............................T TTGACACGATCTGTCGAATCACTTCTGCTGAT 11001 29 96.6 32 ............................A TGTCGGTCAACGTCCGCATGTGCATAAAACGC 11062 29 96.6 33 ............................C CTCAGCCGTGCCGTCGCGAAATCGGGTCCGGGA 11124 29 96.6 32 ............................T CCCGTAAACTAACATCTAGATCTCTTGCCCGG 11185 29 96.6 32 ............................T GTTGTTTTGCCCTGGCCAGTCGGACCGATCAG 11246 29 96.6 32 ............................T TCAACGTCGCCTGAACCATTAAAATCATATAC 11307 29 100.0 32 ............................. ACTGAAATCCCGCTGTCCTCATAGTTTTGGCC 11368 29 100.0 32 ............................. TGACGTGGGGTAGGGGCGGTCGAGCAGCATGT 11429 29 96.6 32 ............................C TCGGACATGATCATCACCTGTAGACCTCTCGT 11490 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.1 32 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : GCAAGATCCAACCGTTTCGCCTGAAAGACTGGGCTGCATTTACCCAGGTCATGAAGGCCACATAGCACAGCCACCCAGGACGGAACGTGCCCCAGTGGGCCAAGTCCCGTTTCAAGCTCACGGCGCATGGTCGGACCCAAATATACGTCGTAGAGCTGCTCCGCCACCGCCACAGTATCGATCATGTGACACACCAGCGGATGCGGCACTGACCCGCTCCCGGCCTTACCCCAGGCTGCTGTGACGGGAACGCTGACAACAACCTCCGACAGAGATCCCACCCCCTGCGCAACGTTCACCGAATCCGGAGGCCAACTTACGGCCATCCGAAGCTCACTGAGCGATCACTAGCTCAAGCATCATAGTTGCCGCGTACTATCGGGAACATCCCAACGAAGCCATTAGCACACAGATTGCCGGGCAGCACGCTAGCCTTGGCCACTCGACACTTGGTAACCAAAAATCCCATGATCGGCACATAACGCACCAGGTCAAAAAGG # Right flank : GCCTACGCGAGTGCTTCTCGCCAGAGATGGGTCCGTGTGGAGTTTAGGTTGAGGGGTGTGCGGGAAAGAGGTCGCCATAGTGGCCTGAATTCCACGCAGGCGCTGCGAAACACCACATCGATCATGAACCAGCGTGTCCGCGACAACCGCCGGGCGCCCCCGATTCCCGGCACACACGGGAATCGATCATCCAGGACGCATTACACGAGGTGCTCCTCTACACGACCCCGCTGGATGGAACGAGGCCGGTGGGGCAGAGCGCTAGATATGCGAAGGTCCGGTGCCGTCCGTAGCTGGACAGACGACGCCGGACCAACACAAGCTCGAATGATGCAGTACCGGGCGACCCTTGAGGGTCGTTGGAGCAGATCCGACCGCTTCCGCCCCACGTCCCGCCGCATGCTCGCCACGGCAGGACCCGTCAGCGATATGCAGTATCAGGACTCCGGCTGCATGCCGAGCATGAACTGAACCTCGCCCTGCTCGCTGATCTCGGCGTC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28164-26977 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIG01000019.1 Phytoactinopolyspora halophila strain YIM 96934 Scaffold17_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28163 29 96.6 32 ............................G ATATGGCGTCAGGTTTGTGCCAGCGGAAATTT 28102 29 96.6 32 ............................C AATTCGATTTAGAAGAAGAAACTGATTTGTTC 28041 29 96.6 30 ............................C GGACTATCACCTGGTTATCCAGGACGATGC 27982 29 100.0 32 ............................. TGAGAACGTGCCAGGCTCCCCACTACGTGATC 27921 29 96.6 32 ............................C TGTTACGACCCGTCCGAGAACTCGGTGGCGCA 27860 29 96.6 32 ............................G CGGTTGGGTCAGCTGGGGCCGGCCGGTGATCT 27799 29 100.0 32 ............................. AGTTCCCGGTGTCCGGGTCGCGCAGCGCGACC 27738 29 100.0 32 ............................. CTCGCCCGACATCATCGAACCCCGCGACGGAA 27677 29 96.6 32 ............................A CACCCGCTGACCCTGGGAACGTCCACCAATCT 27616 29 96.6 32 ............................C ATTGCTCTGACCGAACCCAACGGCGCGTATAT 27555 29 96.6 32 ............................G GACTACACCAACTATCAGAAGCACGACACCGC 27494 29 96.6 32 ............................C GCCTGATAGGGATTTTCGATTGTTGGCATAAT 27433 29 100.0 32 ............................. CAGGAAGAAATGGCCTCTCAGGTTCTGGTTCG 27372 29 96.6 32 ............................C CCCTCTGCGATGGAGGACGCCACAATGCCCGA 27311 29 100.0 32 ............................. GGTTCAGGCGACGTTGAATTCAATAACAACAA 27250 29 96.6 32 ............................G TCGACGTCGCAGACTGGAGCGACGCCTACGGC 27189 29 100.0 32 ............................. GGGCCATCCTCAATCACCTGAACGTCGACATG 27128 29 96.6 32 ............................G GTTCTTCCGTGTGCTCTGCCTTGGGTTGGGTG 27067 29 96.6 33 ............................A TGAGGACCGCACGAACCCATCAGGGAAACATTC 27005 29 93.1 0 ........T..................G. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.4 32 GTGTTCCCCGCGCACGCGGGGATGATCCT # Left flank : GTAGCGCGGCTTGTGCTTACCGCGGAGCAGGATGGCAGCGTGGGAGGCGAGCCTGCCGAGAACGACATCTTTGGCGTCGATGACATACCACTGACGCTCGACGTCGCCGGGTTTGGGGCTGTACGTGCGCACGGTCGTAGGCCTTCACTTCGTCCGTCGGGATGGTTCAGGTCTGTGGCGCGCCGTCACCCATCACGAGGTCACCGCTGGCGCACACAACGAAGCCCTAGCTTACTCGTCCAGACGCCGGCCGGTCAAAACCTACCCTGGATCGGCAACGACTCCGAGCCAACCGGCATCACGAACCACCCTACCGGCAAACACCGACCATGTGCCCGGGGGCCATCAGAAAGCACAGCCGACCCGATACACGGTGCGCGAGCCGAGCACGACGAGAATGCGATGCGCAGGTCGGATCCAGCTTCCATCTCCACGACAATGATCAGCCGCAAGTGACTGAAAACCGGCCACCGACGCGCTAAACTAGCTGGTCATTAAGG # Right flank : CAACTAAATGAGTGCATCTGAAATGGCCAGGCTTTGCTGATCGTCGACGATCGCCTCCATGGACATATGCACTATCGTCAACGATCACGTGGGCATCGAGCGTATCGATCGCGAGGGACGTCACCTCGCATGCGGGCCATGATCGGGTGTGGAGTTTCCGCGCCTTGTGTGCGGAGAATAGGTCGCTATAGCGACCTGTATGCCACACGCCACGCACGGGTAACCGGAACTCCACATCGATCATGGATCACCGTGTCCGTTCGGGCGGCAGGTAACCTCTCAGGCTCCATTCGAGCAGCATGCTGACCGTCTCGTAGATCCACCCGAGCGGCAGGCGTCCGTCTCCCGAGCCCACGTTCAACCCGCGACGATCGTCAACGGAATCAACCACCGTCAACGGGAGCGGGCGACACGTCCCTCGTCCCAGACCGGCTCGGGCGACTCATAGATCGTGCCGTCGGCGCCGAAGACGAGAAACCGATCGAAGTCCCGCGCAAACC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGCGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2608-2030 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIG01000017.1 Phytoactinopolyspora halophila strain YIM 96934 Scaffold15_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2607 29 96.6 32 ............................G ACGATCCGCAATCGCCACGGGTTACTCTCTGC 2546 29 100.0 32 ............................. CGGCTCGTCCGGTCAGGTCACTGGAATCCGGA 2485 29 100.0 32 ............................. TTCGACATTGATATCGGAGACGGGGCCACCCA 2424 29 96.6 32 ............................T TCAATGGCTGGTCACGCGCTCCGGAGCCGAGG 2363 29 100.0 32 ............................. CGTTTGAGCGCCGGCACCACCAAACCAGCAGA 2302 29 96.6 32 ............................G GCTCACAAGCCTGCGGATAAGTCTCGGCGGGC 2241 29 96.6 32 ............................T TGGTCAGGAAACTGGCTTAGAGTCTGTAACAG 2180 29 96.6 32 ............................A GCGGCGTCCGAGAGGCGGGCCACTTTGCGGTG 2119 29 96.6 32 ............................T TCCTCCAGGAGCTTTCTCAGCTCGTCGGCGAC 2058 29 89.7 0 .....................G.....TG | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.9 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : ACGGCCGTACCGCCAGGTTTACGGGGACACCTGACCCGATGGCTGCTGGAGATCAGCCCAGGCGTCTTCGTCGGATACGTCTCTGCACGGGTACGGCAGCACATGTGGGAACGAGTGGTCGAGTTCGTTGAAGACGGCCGTGCACTGCTGGTCTATGCCGTGAGCGGTGAACAGCGGCTGGCCTTCGAGGTACACGGACACGACTGGACCCCCGTTGACTATGACGGCGTCATGCTTATGCGACGCCAGACCGCGCCGGACTACGTTCCCGCTCCATCAGCGCCGATGCGCCAGCAGCGGGCCGGATCGACAGCGTCCGATGAGACGGTGTGGAAGCGACGCGACGCACGCAAGAAGTTCCGCAAGAAGTAGTGTCGCCACTTCCGAATGCCCGCTACCGTTATAGTTGATCTTCGAGAAGCCGGAGATCGCCGTCTGGGATCTTGACAAGAGTGACTCAAAATCGGGTAGCCCGCGCACAACGACCCTGGTCAAAAAGG # Right flank : TCTACGGTCGACATGTAGATGCTGGTCCGCCTCAACGATGATCGATGTAGAGTTTCGGCGTTTCGTGTGCGGAGAATAGGCCGCTATAGCGACTTGAATTCCGCACACCCGCTTCACTTCGATCATGAACCGCCGCGTCCGCGAGGGCAACAGTGCTCCCACGTGGGCTGATCTCGCGGAGGGGTGTCTGCGAACACCAACAACGAGCGTCGTGCCTGCGCTCTCCCAGAGATGCACGATGCGCAAATGGCTCTATGGGATGATCGATGACTCCTGGCACGGCTGCCGGAACTGACTTCTTGGCTCTGCGGAACGTCCAGAGCCCGTGGAGCCCTTCTGGACGTTCCACAGAGCCAAGAAGTAGGTGATACTTGGGCGAGAGCGATGATCTCGCCCGAGGGTAGGGCTCAATCACGTGCGAAGCAGGCCGGACCGTTGATGTCTTTGGGGCGGCCGGGATCTGATCGTGCGTGGGACGGGATTGATCATGTGTGGGGCGG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14830-12299 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIG01000017.1 Phytoactinopolyspora halophila strain YIM 96934 Scaffold15_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14829 29 100.0 32 ............................. AAGTGCCACTGTGACAATACTTCCCAGCAGAT 14768 29 96.6 32 ............................G TTACCCAAACGAACGCCAGCTCGGCGAGTATG 14707 29 96.6 32 ............................G ATTCGCCAGATAATTCGCCTGCCCAGCAAAAT 14646 29 100.0 32 ............................. AGCAGGCGGTCGTGCCAGTCCAGCGCGTCGAT 14585 29 100.0 32 ............................. CGACCACTCGCTCCCGGCAGCATCGGTGAAAC 14524 29 96.6 32 ............................T CAGCAGTCATCCACCCCACCCCCGCATCGATC 14463 29 96.6 32 ............................T TCTCCGAGGACCTGCAGGTGCTGCTCGACGAG 14402 29 100.0 32 ............................. CAGTGCAGCTCGGACAGGGACAGCACGGGGGA 14341 29 100.0 32 ............................. CTCTCGTGCAGCCACCCGCCGGCGCTCTGGGT 14280 29 100.0 32 ............................. AGGCGGCCGACAGCGTGGGCGGTTCGGCGGGC 14219 29 100.0 32 ............................. GGGCCACCGGCCTGGGGTGTCCGGTGGCCCGT 14158 29 100.0 32 ............................. GATCACCTGTTAGTTTGGTACCACGTACCAAG 14097 29 96.6 32 ............................T TCCTGGAGAGACGTTCTACATTGATACGTCCG 14036 29 100.0 32 ............................. TGGCGCGGCTGCAACAGCTGAGCGTCGACAAG 13975 29 96.6 32 ............................G AAGAGCCTGGCGTTGTTATGTTAGATGGTGAT 13914 29 96.6 32 ............................G GCTGGCCGAGCTGGGCGCGCCGCAGACTCACT 13853 29 100.0 32 ............................. ATGCCCAAAATCCACGGCAAAACAAACCACGC 13792 29 96.6 32 ............................A CGGGGACTTATCTCTTATCCAAATCGGGTTCA 13731 29 93.1 32 T...........................G AGCGCCAAACTACGCGGTGTCGCGTTGACAGC 13670 29 96.6 32 ............................T TATAAACCTGGCGTTTGGCCTGTATCAATTTT 13609 29 96.6 32 ............................T TAGAAGTTGCTGTCGCTATCGCTCTTGGTGAA 13548 29 100.0 32 ............................. TCCGCACCCGACGTGGCCACATCACCGTCGAA 13487 29 100.0 32 ............................. TGGACGCCACGTGAGGTGGAAGGCGACATGGC 13426 29 96.6 32 ............................T CTCGAAGCGTCGTTGATCGGCTTGGCTGGCGG 13365 29 96.6 32 ............................G GCGACAAGGAACGGATCATCCCGCTACACGAG 13304 29 96.6 32 ............................G CGATCGTCAGTGATGCATCCTGGTTTCGCGTA 13243 29 96.6 32 ............................T AGTTGGTGACGAGACCGACGACGAGACCAATT 13182 29 100.0 32 ............................. CGTTTGAGCGCCGGCACCACCAAACCAGCAGA 13121 29 96.6 32 ............................T GCACCATGCCGTGTCAACACGTGACCCTGATT 13060 29 100.0 32 ............................. AGGTCCGGCCACCGCAGCCCGATCAGCCCGCT 12999 29 96.6 32 ............................G TCGGGATTTGCGAGCCGGCTGGTATTGGTGAC 12938 29 100.0 32 ............................. CCGGACTCGGAGACGATGAGGCGGTCGCTGTC 12877 29 96.6 32 ............................G GCATGGCATCAGAATCGCCCCAGTCAACGGGG 12816 29 96.6 33 ............................T GGCGGCTGGTTGCCGTCGTTGGTGTTGTTTCCC 12754 29 96.6 32 ............................G ACACCGGTGGGTCGTCGTACACGTCGCTGTCA 12693 29 96.6 32 ............................G GCGCCCCCGCTCGACCCGCCGCCCGACATGAC 12632 29 96.6 32 ............................G TTCTTTCTCGATTTCGCGGCGCGCCAGAAACG 12571 29 96.6 32 ............................T CGGACACTCTCCGCAGTACACGCGGCGCACTC 12510 29 96.6 32 ............................G GGGCTGAGGGCATTGACAGCGCGGAAGTTGTG 12449 29 93.1 32 .....T......................A CAAACACGTGATTCGATGCTTGATGCTTTGTC 12388 29 86.2 32 ..........T..........G.....TT CCGGCGAACGTGCTCATGGATCGATCCCTCCT 12327 29 86.2 0 ............TG.........T....G | ========== ====== ====== ====== ============================= ================================= ================== 42 29 97.2 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : AACCCGGCCTGTACATGGTGAGTGTGAGCGGCGAGGGTCCGAAGAAAGAGCCCGCCCAGGTGAAGATGCGCTTGCGCGTCGAGCCATAAGTCGTGGACGCACCCACACTCATCGGCGGTTACCGGGCGTAAACGCTCGGTTACCGCCGATGACGTATTAGAGGTCAAATTCGCGTTCAGGCTCGATAGACGCAGCAAACGTTGAGCCGCACTGGGAGCTCCTTGTGTGTGGGGCTGCCCGGCGCATCACGCTGGCAGCCCTTCACGAGGTTGTGACCGACGGGTGCCCAGCTTCCCCTGGCCGAGCCATCCACCTCAGCGTGTTCGTCAGCTACGCTGCCGACAACTGATGAACCTCAGGAACGCTTCTTGATTCGATCACATGGTGCAACGCTCGCCTCGCTCGGGTACGGGTCTGACCGGGATCGAGATGAGCGCGGCGATCGACCAAGACTGACTAAAATTCGGGGTACTGGCGTATATTGCTGCTGGTCAACAAGT # Right flank : TCGCAGAAGTAGCACTCGTCATCGCGGGGTACGTGCTCCCTTCGGTGGGGATGATCCCTCACCGCACTCGGCCAGATGACCCGGTCGGCCCATGCTCCCGCGTAAGGGGATGGTTCTGTCGGACCAGCAACACACATCGCACTGTCCCGCCGGATCCAAGCGTTCAAATACGATGATCGGCACGAAAATACAAGAGACTGAAGGGCTTGTTTTCGTGTAGCTCATCTACCAATCTACGGAGATCGCGGTCGTCGTATCCGTGCGATGAGCGAGTTGTGTCCGGGGTGGGGCATAACGTCGAGGCGTCTGCAGGGCCGCAAGAGGGGAAGGTTCTGTGGTCGCCGAACGACAGATGACACAGCAACGCGCCGAGGGGGTTCGGTGGGGGATCGATCTTTGAGCAGTGCCGCTCGGTCGGTGTGGGCGAAGTCCCCGAATGAGCGGGGGGAGTGGCTGCCGCTGTGGCAGCACATGGACGACTCGGCCGACGTCGCCGGCCA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //