Array 1 22325-20580 **** Predicted by CRISPRDetect 2.4 *** >NZ_CASF01000054.1 Salmonella enterica subsp. enterica serovar Agona str. 41.E.09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 22324 29 100.0 32 ............................. GAGGCGCTGGCCGCGCTGGCCGCAGAAAAATT 22263 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 22202 29 96.6 61 ............................N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCTGGCCGCGCTGGCCGCCGAAAAATT 22112 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 22051 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 21990 29 100.0 32 ............................. CGCACCTGCTGGGACATGACCCTGCCGGAGCT 21929 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 21868 29 100.0 32 ............................. CTGTGTGGTCTTTGCATAACGGTGTAACAGAG 21807 29 100.0 32 ............................. CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 21746 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 21685 29 100.0 63 ............................. CAGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 21593 29 79.3 32 NNNNNT....................... CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 21532 29 100.0 32 ............................. CAGGAGTGGTTGGAGACTGTCGTCAAGCCTGA 21471 29 100.0 32 ............................. TTTTATAACGACACTAAAACCCGCCAGTTATA 21410 29 100.0 32 ............................. ATTTTAACGGCAAGGTCGACAGGAGATACCAC 21349 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 21288 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 21227 29 93.1 60 ...........................AN NNNNNNNNNNTCCAGCGGGGATAAACCGATTTTAACGGCAAGGTCGACAGGAGATACCAC 21138 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 21077 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 21016 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 20955 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 20894 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 20833 29 100.0 73 ............................. GCAGAAACAGAAACCGGATATGTGCCAGCGGGGATAAACCGGCTAAAACGGCGCTTGAGAACAGTATCAATAT 20731 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 20670 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 20609 29 93.1 0 A...........T................ | A [20582] ========== ====== ====== ====== ============================= ========================================================================= ================== 27 29 98.5 37 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAATGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 39249-38611 **** Predicted by CRISPRDetect 2.4 *** >NZ_CASF01000054.1 Salmonella enterica subsp. enterica serovar Agona str. 41.E.09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39248 29 100.0 32 ............................. GCGACTGGCTGGTCAGCACGCCGTTAGTCGCC 39187 29 100.0 32 ............................. AAATTGTCTAATAGATTGGCAAAAGCGATGGA 39126 29 100.0 32 ............................. GCATCCCGGACAACAGGATCATCCCATTTATT 39065 29 100.0 32 ............................. CCAACTGGCCTAAAGCAAATCCCGGCTTAGGC 39004 29 100.0 32 ............................. CCAACTGGCCTAAAGCAAATCCCGGCTTAGGC 38943 29 96.6 32 ............T................ GTTAAGGGGGAGTGAGATGCAGATAAAAACGA 38882 29 100.0 32 ............................. GTTAAGGGGGAGTGAGATGCAGATAAAAACGA 38821 29 100.0 32 ............................. TTTCCAAAAATCACGTCACCCGTTGTGATCTG 38760 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 38699 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 38638 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //