Array 1 82572-81058 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHSK01000025.1 Bifidobacterium longum subsp. longum strain MCC10091 contig0025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 82571 36 100.0 28 .................................... GGTCAAGTAGGGTCATGCGGGGTCAAGT 82507 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 82442 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 82378 36 100.0 28 .................................... CATCGAGACGACGCGCGAACTTGAGGCC 82314 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 82249 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 82185 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 82121 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 82057 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 81992 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 81927 36 100.0 28 .................................... GCCAACGGCGCGTACACCGGCAACTTCA 81863 36 100.0 28 .................................... AAGAAGACCGCGACTATCGGCTACCAGG 81799 36 100.0 29 .................................... GTGGGAATCCTGTTGAAGTGGGGTGAGGA 81734 36 100.0 28 .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 81670 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 81606 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 81542 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 81478 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 81413 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTG 81349 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 81285 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 81221 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 81157 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 81093 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 24 36 99.4 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : TCGTGACTAAACCCGCAACAACTAATTGAACACAAACAGGTATCACCGTCACCGTCA # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTACGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCAACTGAATATCTTTAAACTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1246-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHSK01000058.1 Bifidobacterium longum subsp. longum strain MCC10091 contig0058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 1245 36 100.0 28 .................................... TTCGGTTCGGTAGATGGGCGCACCAACG 1181 36 100.0 28 .................................... AGCAACGCGGTAACATTGGCCAACCCGT 1117 36 100.0 28 .................................... AATAAGTCAAGCGAAATGCAAAACACGG 1053 36 100.0 28 .................................... TCCCTAAAGTACGCAGTTTTTCGATTGA 989 36 100.0 28 .................................... ACAGCGGAGATATTGCGTTGAATCAGGT 925 36 100.0 28 .................................... AACCTGTTGGCCTGGTCCCAGTCGCTCG 861 36 100.0 28 .................................... GCATGAAAATGCCCCCGCGAGACGGCAA 797 36 100.0 29 .................................... GAACCTGTTGGCCTGGTCCCAGTCGCTCG 732 36 100.0 29 .................................... TGTCCGACATGTTACGGTTCACGGTGTCA 667 36 100.0 28 .................................... TTTTGCTTGCGCATGTTTCACCTCCATA 603 36 100.0 28 .................................... AACAGCTGAACATTATTAAAATCAGTGA 539 36 100.0 28 .................................... TCACCATCGAAACGGCTCCTTACATGGT 475 36 100.0 29 .................................... GAATCGTAGTTGACGCCGCCCGCCGACTG 410 36 100.0 28 .................................... ACTATGGATATCGACATGAAAATCCTCC 346 36 100.0 28 .................................... CTTCGAGGTTCCGGTAATGGCTGGGCTT 282 36 100.0 28 .................................... AGCGTGAACGCAAGGCCATCGCATATGT 218 36 100.0 28 .................................... CAGTGTTGCCGCTTTTTCGGGGGTGTCG 154 36 100.0 28 .................................... GTAAAGGGTGGCGTTTTGTCGAAGTCAC 90 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 19 36 100.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : GGCCATGATCCAAAGTGCGCAACTTTTCGGGCACTACCACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTA # Right flank : CGTCGTGTCGGTATCACTGTATTTCGTCAAGTCGGTGTTTCGTGTTTAGTCATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //