Array 1 433535-434660 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURM01000012.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002063 CFSAN002063_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 433535 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 433596 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 433657 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 433718 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 433779 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 433840 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 433901 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 433962 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 434023 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 434084 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 434145 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 434206 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 434267 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 434328 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 434389 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 434450 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 434511 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 434572 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 434633 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450919-452576 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURM01000012.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002063 CFSAN002063_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 450919 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 450980 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 451041 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 451102 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 451163 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 451224 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 451285 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 451346 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 451407 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451468 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 451529 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 451590 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 451651 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 451712 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 451773 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 451834 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 451895 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 451956 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 452017 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 452120 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 452181 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 452242 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 452303 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 452364 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 452425 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 452486 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 452547 29 96.6 0 A............................ | A [452573] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //