Array 1 2637999-2636688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADDWT010000001.1 Escherichia coli isolate SC400, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2637998 29 100.0 32 ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 2637937 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 2637876 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 2637815 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 2637754 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 2637693 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 2637632 29 100.0 32 ............................. CCGGTCGCGCTATTGAGCCGTTCTTTTCACAG 2637571 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 2637510 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 2637449 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 2637388 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 2637326 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 2637265 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 2637204 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 2637143 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 2637082 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 2637021 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 2636960 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 2636899 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 2636838 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 2636777 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 2636716 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2664343-2663703 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADDWT010000001.1 Escherichia coli isolate SC400, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2664342 29 100.0 33 ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 2664280 29 100.0 32 ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 2664219 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 2664158 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 2664097 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 2664036 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 2663975 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 2663914 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 2663853 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 2663792 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 2663731 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAAGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //