Array 1 216-1864 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSD010000047.1 Pseudomonas aeruginosa strain CCBH28865 47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 216 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 276 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 336 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 396 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 456 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 516 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 576 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 636 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 696 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 756 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 816 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 876 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 936 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 996 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 1056 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 1116 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 1176 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 1236 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 1297 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 1357 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 1417 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 1477 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 1537 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 1597 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 1657 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 1717 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 1777 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 1837 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11795-10390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSD010000047.1 Pseudomonas aeruginosa strain CCBH28865 47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11794 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 11734 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 11674 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 11614 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 11554 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 11494 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 11434 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 11374 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 11314 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 11253 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 11193 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 11133 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 11073 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 11013 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 10953 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 10893 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 10837 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 10777 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 10717 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 10657 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 10597 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 10537 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 10477 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 10417 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7878-6950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSD010000117.1 Pseudomonas aeruginosa strain CCBH28865 117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7877 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 7817 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 7757 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 7697 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 7637 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 7577 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 7517 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 7457 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 7397 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 7337 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 7277 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 7217 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 7157 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 7097 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 7037 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 6977 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //