Array 1 212474-212746 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJZD01000004.1 Escherichia coli strain MOD1-EC1657 MOD1-EC1657_4_length_212956_cov_37.0327, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212474 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 212535 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 212596 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 212657 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 212718 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8700-10925 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJZD01000025.1 Escherichia coli strain MOD1-EC1657 MOD1-EC1657_25_length_74696_cov_37.8075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8700 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 8761 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 8822 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 8883 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 8944 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 9005 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 9066 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 9127 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 9188 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 9249 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 9310 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 9372 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 9433 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 9494 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 9555 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 9616 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 9677 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 9738 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 9799 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 9860 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 9921 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 9982 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 10043 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 10104 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 10165 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 10226 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 10287 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 10348 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 10409 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 10470 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 10531 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 10592 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 10653 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 10714 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 10775 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 10836 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 10897 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //