Array 1 232848-231415 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGERF010000002.1 Salmonella sp. 32130201-2017-00038SM NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 232847 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 232786 29 100.0 32 ............................. CGATCGGTAATTCTATGGCCGTGCCGGTGATG 232725 29 100.0 32 ............................. GGCGCGTTTTGTCGTCTTTTGCCGCCATTGCA 232664 29 100.0 32 ............................. GCGATCCTGGGGAAAGAATAGCCCCAGGTGCT 232603 29 100.0 32 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTG 232542 29 100.0 32 ............................. CACTGCTAACACCGCTATTGCTGTGATAAATA 232481 29 100.0 32 ............................. ATGCCCGGGAGGAATACTACTGCGAGCCGAAG 232420 29 100.0 32 ............................. ACCAGTTTAGTCGCGGGTGCAGCAACTCATTT 232359 29 100.0 32 ............................. ACTGCGTGACGCCGCCATCAGAAATGTTAATA 232298 29 100.0 32 ............................. GCCATTGAAATCATTAACAGCGATAAAATTTG 232237 29 100.0 32 ............................. GCGGGTAAAAATGCAGACTGATATCAAACGCA 232176 29 100.0 32 ............................. CGGATCATATAGGTGAGAATTTCTTCTTTTTT 232115 29 96.6 32 ............................T CAATCCTCGCCCCATTCATCGCAGTACGCATC 232054 29 100.0 32 ............................. AGAAAATCGACAACATGACGGACGCCGACTAC 231993 29 100.0 32 ............................. CCCCGGAAGTGGCCGGGGAAACAAGGCAAGTC 231932 29 100.0 32 ............................. TACCAGGATACCCTGAAACGCTACCGTGTCCC 231871 29 100.0 32 ............................. CAAACATGACAGTAAAACGCCGGATTGATGTT 231810 29 100.0 32 ............................. TATGGAAATCAAGGCGCTGGCAGACGGGGAGT 231749 29 100.0 32 ............................. GACCAGATTAAAAAAACGGGCTGGACATGGGG 231688 29 100.0 32 ............................. TCTGGCAGTTGCGACAATAACTATGTGTATTA 231627 29 100.0 32 ............................. CTGGCATAGTCTTTTGCAATAGCGATAGCAGT 231566 29 100.0 32 ............................. CAGCTGCGGTCCGGCGTTATCGTCAGACCAGC 231505 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 231444 29 96.6 0 ............T................ | A [231417] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGTGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 251167-249735 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGERF010000002.1 Salmonella sp. 32130201-2017-00038SM NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 251166 29 100.0 32 ............................. ATGATTCTTTAGCCATTAATCACTGAGAAGGT 251105 29 100.0 32 ............................. ATGTGTCCGCAATTGAGCGTTTCTCGGCTGAT 251044 29 96.6 32 ............................T ACATCATTCAGCCCCTTGCACAACGCAATGGC 250983 29 96.6 32 ............................A ACCATTTAACTCACTGGATTTCGTGTACAGCC 250922 29 100.0 32 ............................. ATAACCAATTTGTTGGATATCGTAAGGATGAG 250861 29 100.0 32 ............................. TGCAGGGTTTGGGGGTACGATGGTGCAGAGGC 250800 29 100.0 32 ............................. AAAACCAAAAGGATTAACTTGCGTTTAATTCA 250739 29 100.0 32 ............................. TGACGGCAGTCAGGGCTAAACCAGGCCAGACC 250678 29 100.0 32 ............................. ATCGCTATATTTAGCCCGCAGCTCACTAATAA 250617 29 100.0 32 ............................. GCCTGGCTGGACAGCGAACTAAACACAGAAGA 250556 29 100.0 32 ............................. AATGGAAAATCTGCAATAGCGGCGGCCGTTGG 250495 29 100.0 32 ............................. CGCTGGCTAGGAAAATCCGTATTGCTCACCGG 250434 29 100.0 32 ............................. CGCCTGTCTATGAATGGCAAGGAAACGCAGCG 250373 29 100.0 32 ............................. TGTTTGAGGTCGATCAGGCCCAGCTTCAGATC 250312 29 100.0 32 ............................. CCACGGCAATGGCACCGGCCACTAACACCCCA 250251 29 100.0 32 ............................. ATCTGCAACCAGGCGGCACGCGCTTAATTTTC 250190 29 100.0 32 ............................. CGGCTTTTTTTGTGCCCGCGATTTGTCGTGGG 250129 29 100.0 32 ............................. GGTAAGCAAAATGGGCTTGTGACCTGGAATGA 250068 29 100.0 33 ............................. ACGCTTTAATCGATTTCTGAACGCGGCGCAGGC 250006 29 100.0 32 ............................. ACGCGAAACCTGAACCATTCAGATTGGACAAA 249945 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 249884 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 249823 29 96.6 32 .......................T..... GTCACGAGGTCTGACGCGGATGTGATGAGTTA 249762 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATAAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGCTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //