Array 1 809660-810480 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 809660 28 100.0 33 ............................ GGGCGGCACGGCGTGTTCGCGGGGGTGGTGGCG 809721 28 100.0 33 ............................ GGGCGGCACGGCGTGTTCGCGGGGGTGGTGGCG 809782 28 100.0 33 ............................ GACGATGGCGGGCTGTTTCCCGAGCCCTGCCGG 809843 28 100.0 33 ............................ CTCTTCGCGGGCGCCGCTGGCCGTGTCGACCAT 809904 28 100.0 33 ............................ GTACTTGCGGATCGGACCGGCCCCGGCACCCGG 809965 28 100.0 33 ............................ GAAGGTCGTTCGGTATGACACTGCTGACCGAAG 810026 28 100.0 33 ............................ GAGCTCCGGGCAGACAAGCGGGGCCGCACCAAG 810087 28 100.0 33 ............................ GGCCTCCCCGCCGACGACCCCGCGATGGACACC 810148 28 100.0 33 ............................ TGGGCAGCCACCCGGCCGGGGGTTTTTCCTGTT 810209 28 100.0 33 ............................ GATCGGGCCGCCGTCGTCGATGTCGCGGTGCTC 810270 28 100.0 33 ............................ GCGGAGAGCTCTCTGGCCGAGATGACGCGCCGG 810331 28 100.0 33 ............................ GGGTGGCCCACCAACCTCGCGGCGGCGCGGACG 810392 28 100.0 33 ............................ CGTGTACCGGGACACGTTGTGGGGTCGCACGAG 810453 28 89.3 0 ...........G.A.............T | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.2 33 ATCGGCCCCGCACGCGCGGGGATGGCTC # Left flank : GCCGAGGTCGTCGACTGCGCGGACTGCCAGGCGATCGTCTGGGACGAGCCGAGCCCGCGCCCCGCCCATGCCCGGCCACGCCTCTACATTCGGCGCGTCGGCACCGTGCCGGTCCACATCGTCGACGTCGAAGGCCTCACCGCCACCACGATGACCAGCCTGTGCCGCACCGTCTTCCACCTCGGCGATCAGCTGGAACAACTCGCGCCCGGTGCCGGAGCCCCCTGCACCCGCTGCCTGCTCGCCTCGTTATCGAGACACGTGCTCACCGCCGCCTGATCTCGCCGCGTCTCTTTCCGCCGCACGGTCCCGACTCGGGGCAGGCCTCGACATCCGTCATGGTCGGCGTCGTCGTACACGGCTGGGAACGAATTCACGGCGGCGCAGGCCGGAAGCCGATCGGACGCGGAGGCCCGCGAACACGCGGTGAGAGCGAAGACTACGCTGAGCAACTGGTATTTTCGAGGCACTGCGGCCGGAGAACGCCCAGGTCAAGAAGT # Right flank : TACCGAGGAACGGCCGGAGCTGTTCCGACACGACAGCTACCGCCGTGGCGTGGCGTGCCGCGTAGGTAGGTGCTGGCCTCTCATCGGACTCGTCACGCCCGTCTTCGCCGAGCACGTCGTCGCAGGCACACGACCCGTCGCGCGGACGTCGGCGGAGTACCGCCTCGGATGGGGAGAGGACGCGGCACGATGACGGTCGCGCCATGACCGGCGGTCTGCCCGAAGACGTCTGCCCTGACGGCAGGCCCGGGCAGGCCGTGTCACTCCGGGAATCGGAGGACGCTCGCATCGCCGGGACGACGCTCCTGCGGAAGGACCGACGGAGGCAGACGTCCGAAGAACCACCCGACCCGGCCGACCTGACCCGGCCGACCCGACCCGACCCGGCCGACCCGAATCGACCGGGTCGAGTCGCCGACGGTCGGCGACTCGACCCACGAGCCGGCCGCCCGAACCCGCCGACCCCGCCGACCCCGCCGATCCTGACGTCACTCCCGCCC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCACGCGCGGGGATGGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 2107076-2107283 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2107076 28 100.0 32 ............................ TGCATGTCTGGTCACTCACCGTTGGAACTGGC 2107136 28 100.0 31 ............................ CTGGACTGCACCGTCAGTCACCTGTCCACCT 2107195 28 96.4 32 ...................A........ TGCTGTGTCACGCCGAGCGCGGTGGCGAGGGC 2107255 28 96.4 0 ...........................C | G [2107268] ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTCCGCCCCGCGCAGCGGGGGTGAGCCG # Left flank : GCTCGATCTGGGCGTCGGAGACAGCCGGTGAGGCCAGCCGGTTCACCAGCAGCTCGACCTCGGCAGGATCGGCCACGACCGTGGTCTCCCAACGGTCGGGATCGATTGCGCTGGCGAGAACGGTTCGCAGACTCATCGTGGTGACCTCCTGCTCGGATACTGCCGGCGGGTCCTCACCAGGCCGAGGACGGTCCGAGCTGCGCAGGGCGCCGGCCCTGCTGGTGCGGCCGGTCACGGCATCCGCGACCAGGTCGATGGGCGGGGCGGGGAGCGCGGCCAGCCGATTCAGTCGAGGCGGGCCTCGCCTCACGTGGAGAGCGCCGCGCACCCGAGCGAGAAACGACGTCCTCCAGGCTGCCGGTCGGGTGTGCGAGTCGTCCATCGTGATGACGGCCGAGTGCTGCGCGACGCTGCGGTACGGTGACCGTGTGTATCCGGACAATCCCTCAGCGTTCGATCTCAAACGTATAACGAGCTTCTGAAACCCCAGTTCGCGAAGG # Right flank : CGGCGGCTCGGCCGGTGTGCCCCGATACAGTGCGTCCCGTGACTTTCACCCTGCTTCCCGCCGTCGACGTCGCAGCCGGTCAGGCAGTTCGCCTGGTCCAGGGCGAGGCGGGCACCGAGACCATGTACGGCTCGCCGCTGGAGGCGGCCCTCGCCTGGCAGCGCGACGGTGCCGAGTGGGTCCATCTGGTGGACCTCGACGCGGCGTTCGGCCGGGGCACGAATCGTGAGCTGCTCGCGGAGGTCGTCGGCGCGCTGGACGTGCAGGTCGAGCTCTCGGGCGGCATCCGCGACGACGAGTCGTTGCAGGCGGCCCTGGCCACCGGTTGCCGCCGCGTGAACCTGGGCACCGCCGCGTTGGAGGACCCGGCCTGGTGCGCGAAGGTCATCGCCGAACACGGTGACGCGGTCGCCGTCGGCCTGGACGTCCGCATCACCGAGCAGGGACACCGCCTCGCCGCGCGGGGCTGGACCAGCGACGGCGGCGACCTCTGGGAGGTC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGCAGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCTGCGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2127605-2128304 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 2127605 28 100.0 33 ............................ GTACATCGACCGGCACGGCCGTATCGACGCCGC 2127666 28 100.0 33 ............................ CGATCGCGGCACGCCCTCAGGCCCCGGCTCCCA 2127727 28 100.0 33 ............................ GGCACGGTGATGAGCCTCGCTCGCCGCCTCGTA 2127788 28 100.0 33 ............................ GCTCGACCTGCTCAGCACCCTTGCCCCCACCAA 2127849 28 100.0 35 ............................ GCAAGACCAGATCCGCCTTCGTGACGAGGGTCTTC 2127912 28 100.0 33 ............................ GATTAAGACGCAAGGTCGAGCCCCCGGTTGGGC 2127973 28 100.0 33 ............................ GCACCCGCAGCGTGCCCGCGTCGTCGGGCGCGA 2128034 28 100.0 33 ............................ AAATGAGCGATGGAGCCGAGCTGCACCGCCGTG 2128095 28 100.0 33 ............................ GACGCCGACGACCACCGCCGGCACCTGCCCGGC 2128156 28 100.0 33 ............................ GATGCAGCCGGTGGACGTCGGCGAATGGGAGGA 2128217 28 100.0 33 ............................ CGTTAATCTTGCCGATTTGGCACCGGCCGTTGC 2128278 27 96.4 0 .................-.......... | ========== ====== ====== ====== ============================ =================================== ================== 12 28 99.7 33 GTAAGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : CGGCCTTCGTCGTCCCGACGGCCTCGTCATGCCTACGGGCCTTGTCACGCGGGGCTTGGTCGTGCGGGCAGGCTTTCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGTCGTGCCGACAGCCGTCGTCGTCCCGACGTGGCGGCGTCCAGCGTCCACGCGGCGGGCACCCGCCGGAGGCCGGTTCGGCGCGTGGTCCTCGGCGACGGTTCCCAGGGCGGCGGCCGGGCGGGCGACGTCGGAGCGGCGACGCCCGGCGGGCGGTTCCCACCGACCGCCGCGCTCGGCCTGCCGCGCGACACCGCCGAGGCCGACCCGCCCCGGCAGCCTGCGGGCCGATGCCGCCGGGACGCTGCGCTACCGTGATCGACGTGGAACCGATCCAAGCCGCCCGAGCGCATCACGAATCGATAACGCGCCTCTGAAGGCCCAGGTCGCGAAGG # Right flank : CGGTCGTCAGCGCTCCCTGGTGACCCGCCTCGCCCGCACGACTCCGCACGGAGGCCTTCCGCCCGGACCGCACGTCACCGACCTCCGCAGGCGCCTGCCCTGCCCCCACACGTGCCCACACCCGTCCGCCTCAGCTCGGCCCCCGTCCTCCCGCCACACCCCCGCAGGCGTCGGGCGGGGGGATCTCGCCCACAGCGGTCGCCTGACCGGCCTCGGAGCATCGGAGCGGAGCGGGCAGAATGGACGCCGGACAGGCGGTGTCCCCCGATCGGGGCGCGGCGAGGCACGAGGCACGGCCGAACGGAGGCACGGTGGAGGGCGCTGAGTTGCGCGGGATCGTCGCGATGGACGGGCCGTCGGGAACGGGCAAGTCCACGGTCTCGCGTCGGCTGGCCCGCGGCCTGCGGGCGCGCTACCTGGACACCGGGGCGATGTATCGGGCCGTGACGCTGGCCGTGCTGCGCTCGGACGTCGACCCCACGGACGCCCCCTCGGTCGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2142061-2142455 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2142061 29 100.0 32 ............................. GAGTTCTCGATCCGCGCGATCGGTGGGGAGGC 2142122 29 100.0 32 ............................. CGCAGCGACAACAAGTCGCGCATCGACGACGC 2142183 29 100.0 32 ............................. GAACGCGGCGTCGTGCATCCTCCCGTCGCGGG 2142244 29 100.0 32 ............................. CGATGCGGGACCGGCACGCCGACGTGCTGCTG 2142305 29 96.6 32 .........................A... TTCCGGCGCGGCGTGCCGTTGAGGTGCACCGA 2142366 29 79.3 31 ...........G...CA......C..CT. ACCGGCAAGAGGTAGTACCGGTTCCGCCGTC A [2142381] 2142427 29 79.3 0 ....A........AG.....C..CA.... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.6 32 GTGCTCTCCACACGCGTGGAGGTTGGTCG # Left flank : ACACCGGATGATCGTCGAGGCCGTGCGGGCGGGCGACCCGGCCGCCGCCCGCGACGCCCTCGGCGCGCACTTCGTGGACATCGAGGAGCGGGTGGCCCGGCTGATCCGGCAGAGCACCGAAGCCGACTGAGACCGAGGTCGGCCGGGGGCCGTCGGTCGGTTCGGGTGGTCGGTCCGGCCGATCGGGTCGGCCGGTCGGCCTGGCAGCCAGTCGGGCGGCCGGCCGGCGCGTGGGCCTCGGTATGCGGATCGCGCGTCGTGGGGGCGGTCGGGCTGCCTGGTTCGTCCTGCCCGGCGGGCGGGGGCTCGGCGGGGTCGGTGATTCGGCGGGTCGATGGTTCGGCGGGCTCGGCGGGCTTGAGCCTTGGTTCGCGCAGCGGCGCGGCCGGAGGCCGACACGCCCGGATCTCGTCCCGACCGTCTGGAAGGATACGGACATGCATCTCGCCCACAGCCTCGAAAACGGTAAACCCGGTTTCTGAAACCGCAGGTCGCAAAGG # Right flank : GGAAACCGGGCTGCTCGTCAGCTCCTCGCCCCGGTGCTCCGGCCGCGAATCGCCCGTCAGCTCGCGGGCTCGTCCTGCGGCTCGGGTTCGGGACGGGCGGCGGGTCGCGGGCGGACCTCGGTCAGCAGCGTGACCAGGATCAGCAGGACGACGCCGCAGGTGAGCAGCGCGTCGGCGATGTTGAACGTGGGGAACCAGCCGGTGTACAGGTAGTCGGTGACGGCGCCGTCGGCGATGCGGTCGACGAGGTTCCCGGTGGCCCCGGCGAGGATCATGGCCAGCGCCAGCCGCGCCGAGTTCGGCACCTCGGGGGCCGTCCGCCAGGCGTAGACGGCGATGCCCAGCGTGACGGCACCGGTGACGGCGATGACCACCCAGGCGGGCAGCGAGGCGCCCATGCTGAAGGAGATCCCGGGGTTGTAGGCCAGTCGGATGCTCAGGAGTCCGAAGTCGGCGTCGACCGGGTGGGCCTGCTCGACGAGGTGCTTCACGACGAGGTC # Questionable array : NO Score: 2.94 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACACGCGTGGAGGTTGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 2158682-2157993 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2158681 28 100.0 33 ............................ GCATGATCCGGCCGTCCTCGGTGATGCTGGCAC 2158620 28 100.0 33 ............................ GTGGTGAGTCCGGAGTTCTCTGTCAGCGGCCCC 2158559 28 96.4 33 ............T............... GGTGGACCTCCCCGCCCTCGATCTGAGAGACCC 2158498 28 100.0 33 ............................ ATGGGGACTGCTGGTCTCCGGGGTGGCCGGGCT 2158437 28 100.0 33 ............................ GTTGGGCAACGTCGGCCCCTCATCAGGGTCGGC 2158376 28 100.0 33 ............................ GGCGCGGCCTCGACCAGCGGAACCCGGATCTCT 2158315 28 100.0 34 ............................ AGGGCCGTCTCGATGTCCTGCTCGTGCTCTGTGA 2158253 28 100.0 32 ............................ CGCGGAGCAGTCCAGGTCGATCAGATGCTCCA 2158193 28 89.3 33 ...C........T.........C..... CACCAGATCCGGGCCTACCCCGTTCCCATCGAC 2158132 28 96.4 33 ...C........................ GGACCATCCTGCCGTCACCATCCCAGGCAGGAC 2158071 28 96.4 24 ...C........................ AATGTGGGCCTGCACCTTGTACTT Deletion [2158020] 2158019 27 67.9 0 .GACC.....-.T..........C..GT | ========== ====== ====== ====== ============================ ================================== ================== 12 28 95.5 32 GTCTTCCCCGCGCGAGCGGGGGTGAGCC # Left flank : CGCGCGACACAGTCGAGCGGCGGACTGGGCCTGCGGGCCGCACTGGCGAGAGGCGCCGTGGACCACGAGGCCGCCTCGTCGGACGGCGGCGGGGCGAGCCGGTCCCACCGCACCGACCACAGTCGACCGGGAGCCCGCCGAGAGGGCGACTCCGCCGCCTCGGCCGCCGGCCTGCCCGCGCCGGTCGGACACCCCGTCTTCGGCCGCCCGCGCGCGTCACAACCCGGCACCCCGAAGCCCGTTCCGCCGAGGCCGAAGCCGGTCTGAGGCGGGCGGTCGGGCCGCACGGCCAGGCCTGCACACGGTCGACCGCTCGCGCGCCGCCGAGCCTGCGGCGCAGGGCTGCCGCCTCTTGGTCGCAGGCCGGCTCCGGCGAAACCGCACACGCGGGCACGTCTCGGTGCCCCACGCTCCAGTACGGTGACCATATGCGTACGTCGAACGCCGCACTGTCACATCACGAAACGATCACGCGCCATTAAAAGCCCAGTTCACGAAGG # Right flank : GCTCGGCGACCGGGTTCGATCTCGGTGTCAGGTCGCCGCCGGCCCGCAGGCGGAGCCTTTCGGCCGCCGATGGTCGTCCGGATCGTGCCAGGTCCGCCCGTGCCCTTCGGGGCAGGCATCCTGCCGATGATGCGACACCGTGTTTCGCGGCAGGGCAGCAGGACAGGCGATCGCACCCGCCCGCCGAAGGTCGGCCGAAGACGGCCGTCGGGCGGCGAATCCTATAGGATTCCGCGCCGCCCCGGCCTAGGGTGCGACTCGGGAGGCCGCCGCGAAGGGCGGCTGTCGGCGGGTCGCGGGAGGCGTGGATGGCTGTCGAGACGGCGGAAGCCGGGCGCGAGCCCGCCACGGCGGCCGTGCCGACGACGGCCGGGTCTGGCACGACGGCGACGGCGACGGCCGCGAAGGCGGCGGCAGCGATCGACGAGGCAGCCCCGCCGGCCGGTACCACCGCGACGGCGACGACGGCCGGGGCCACCCCGACCACGACCCGGCGACGC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 2166720-2167115 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 2166720 28 100.0 33 ............................ CTCGGCGGCAGAGCGCAGACAGGCCAGCTCACG 2166781 28 100.0 33 ............................ GACGTTGGTTCCGGCGTTGCGCGGAGCCTTGAC 2166842 28 96.4 33 ...T........................ GTGTGTCCACATGTGGAGGAATGCCCAGCGTGA 2166903 28 100.0 33 ............................ CAAGAACGCGGTCGCAGGAAACCACCACCGCGG 2166964 28 96.4 37 ..........G................. GCTTCGCACCGATCTGGCTTCCGGCGACGCTGGGCGA 2167029 28 75.0 32 ..A......A...C......C.C..A.A GCGGGACGTGACACAGCAGGACGCGGCTCGGC 2167089 27 71.4 0 ..A..........CG..-A.C.C.C... | ========== ====== ====== ====== ============================ ===================================== ================== 7 28 91.3 34 GTGCGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : GCGCTGGGGATGGCCTTCGGCCCGGACGTCGGCCTCGAACTCGTCGACACACTGCTGACGGAGAAGGCGTTGGCCGGGTACCACCTGCTGCCGAGCGTGCGCGGCGATCTGCTGCGTCGCCTAGGTCGGCTCGCCGAGGCCCGCGCCGAGTTCCAGCGGGCCGCCGCCCTCACCGAGAACGCCCGCGAACGCGCGCTGCTGACCAGACGCGCCGCCGAGTGCGAGCCCGTCCCGGCCACGGAGTCCGGCCCGGCTGCGGGGTCCGACCGGGCGGCGGGGTCCGACCGGGCGGCCGAGTCCGGCGCCGAGCAGCGGGGAGAGACCGCAGCCGTCCAGGCATGACCGGGCCGGGCCTGCGACACACGAGGATGCGCGGCGGTCGCCCACTCGCCGCCGAGAGGCGACCGGCACTGGGATACGGTGGCCCGGTGGATTCCTCGCTGGCCGGACGGAAGTATCACGAATCGATGACGCGCTTCTGAAAGGCCAGGTCGCGAAGG # Right flank : CCGATGCGCCCAGATCGAAGCCGCCGCGACGACGCACCCCGGCCGGCTCAGTGCGTGGCGCCGCCGGGGAGGCGTTCGTCGACGTGGACGGCGAGGCTCGTGTGGACGATCGTCTGTAGCGCCGCCGCGATGGTGGCGACGGACATGCTGGGGCGGGTGCCGTCGGGGACCTGTTCGGGGGCGAACGGGACGTGGACGAAGCCGCCGCGCGGGCCGCTCCCGTCGCCGCGTCGGCCTCGGCCGCCCGCGAGTTCGTGCATGAGCCGGTAGAACACGTGATTGCAGGTGAAGGTGCCCGCCGTCTGCGACACCGAGGCGGGCACGCCCGTCCGGTGCAGTTCGGCCACGCAGGACTTGATCGGCAGCGTGCTGAAGTAGGCGGCGGGCCCGTCCGCGACGACGGGCACGTCCACCGGCTGGTCGCCCGCGTTGTCAGGGATCCGGGCGTCGTCGATGTTGATCGCGACCCGTTCCAGGGTGATCCCCGCCCGGCCGCCCGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 3692793-3692216 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3692792 29 100.0 32 ............................. CGGTCCTTAGGTACGGTCATAGAGTTCATCTC 3692731 29 100.0 32 ............................. CACCGCCCGCCTGGGCGAGGCGGGTGCGGCCC 3692670 29 93.1 32 ..........................C.A AGCACCGGATGTCGAGCTTCTGGAAGGCCTTC 3692609 29 100.0 32 ............................. CCGAGATCGAACGGTTCGCCGGCCGGCCGCTG 3692548 29 100.0 32 ............................. GGCGCCTACGTCCTCGGGAAGCTGCGCATCGC 3692487 29 100.0 31 ............................. GAGGTCGGCGACGTGATCCGGGACCTGTACT 3692427 29 100.0 32 ............................. AAGAACCGCGACCACGACCACGACCGCGAGGA 3692366 29 100.0 32 ............................. CAGGATGCGTGCGGCCTCTAGGTCGGCATCGG 3692305 29 93.1 32 .....................A.....G. CGCATGGTGTCGAGCAGGGCGCACGGAATCTG 3692244 29 86.2 0 .................AA..A.C..... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.2 32 GTGCTCTCCACGCACGTGGAGGTTGGTCG # Left flank : ACCGGCTCATGCCCCAAATCGTCCTGGACATTCAGCGACTGCTGACGCCGGCGGGCGGCACGGAGCCTGCGGAGCTCGACGAGCCGGAGGAGGTCGAGCTCGTGCACCTCTGGGACCCCGACCTCGGCGCCGTCGAGGCGGGCCGTAATCACGCCCACGACGTGGACTGGTGAAGCGTGGCGAACCTGATCGTCATCTCCACGACGGCCGTCCCTGACTACGTCCGAGGCTCACTCAGCCGGTTCCTCACCGAGCCCGCACCCGGCCTCTACGTCGGCAGCGTCTCCGCTCGGGTGCGCGACCTGCTGTGGGAAGCCGTGAGCGAGGCCGTCGGCGACGGTGCCGCCGTGTGCGTGCACCCCGCCGACAACGAACAGCGGTACATCGTCAAGACGGCCGGTCGGCGGCGCCGCCGCGTCATGGACTTCGACGGGTTCCAACTCATCGAGTTCCGAGACACGAACGGTCAATCGGCTCTCTGAAAGCCCAGGTCGCGAAGG # Right flank : GGCCGCTCGGACCGCGTGCTCTTTCGCACAGGTGGCACGTGATCGTCCCGCCGAGCCCGCGACAGAGTCGATCGCGGGAGCGCGCCGGGTGTCCCAGGAGGCCGTGCGCCCTCGGAGGTCGCCGCCGTCGTCGGGCGACACAGTGCCCGGCCCCGGCGGAGGGAGTCGTGCCGAGGTCGGGCGCTGTCGGGGGCGGAGCCGGGCCCGGGTGCGCGGGCCCGACTCCGGTTCTCCGGCCTGCGCCGAGGCTCGGCGGGAGCCGGGGGGTCTCGGGGTGGCGGGGAGCTTCGAGCGCCGGGGAGCATGCGCCGTGACGCCGTGACGCCGTGACGCCGTGACGCCGTGACGCCGTGACGCCGTGACGCCGTGACGACCGGGGCGACTGAGGTCGCTCGACGCGGTGGCAGTCGGCACCGCCCGCCGCGACCGCGATCAGGCCGTCAGACGGCGATCCGGCTCGAACTCCGTCCCACCGGCGCCGGGGCTCATTCGACGCCGTC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTTGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 8 3703933-3704693 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3703933 29 100.0 33 ............................. TAGTTCTCGCCGAGCCGCTGGATGTCCTGGCCC 3703995 29 100.0 32 ............................. GCATACACGCGCACCGCACGAGCCCACGAGGA 3704056 29 100.0 32 ............................. GGCACGCCGCACACGGCGGCGGCGACGGCGTG 3704117 29 100.0 32 ............................. CCTGGGACGCCTCGACGAAGACGGACGAGGGC 3704178 29 100.0 32 ............................. GGCGAGGTCGACCTGCCCGCCGACGGCGGCGG 3704239 29 100.0 32 ............................. GAGGTCATCGGCGACGCGATCCGCAACGCTGC 3704300 29 100.0 32 ............................. GCCCGGCCGGGGCGGCGTTCTTGGCGGAAGAC 3704361 29 100.0 32 ............................. ACCAGGCCCGCGACCAGCTCCAGCCCCGCCGC 3704422 29 100.0 32 ............................. CGCCGATTCGACATAGTCGGCATAACCTCGAA 3704483 29 100.0 32 ............................. GCATTCAGGCGCCCTTCGATCTGGCGAATCGG 3704544 29 96.6 32 ..........................C.. TCGGCGATGTCGGTCTCGTAGGTCAGATCCTC 3704605 29 96.6 32 .......................G..... CCCGTCTCCCCGTCGGCGGCCTCTACGGCCGC 3704666 28 75.9 0 ...C.........A.C......-CC...A | ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.6 32 GTGTTCTCCACACGCGTGGAGGTTGGTCG # Left flank : CGTGACCGGGCGTCGGGTACCCGGCGGGCAGTTCGAGCTGGCACTGGAAATGCGGGGTCAGTTTCCCGATGTCGTGCAGCGCGGCCCAGAACTGCACCGTCCGCCCAGCCGCCGCCACGGACAGCCCCAGCTCGGCCGCGATGTCTTCGCGCAACCCCGGCGCCACCATGTCGTCCCACAGCGCCGCCGCCACGGCAGCCGTGTCCACGAGATGGAAGATCGCGGGATACCGCCTGCCGAGGTCGCGTTCCTTCCCCCACAACCGCAGATCCACCAGTACCCGGTGCTCGATCTCCGCCGCGTCCCCGCCGGCATCGCCCGTCACCACATCGTCACCCTCGGTACTCACGCCGACACCCTAGAGCGGCACACCGACGAATCCCCCAGGGATCGACGGCCGTGGCCACAGGGCACGGGGATCTGAGAGGATTCCCGTCATGCGGACTCACGGCAACGACTAAAACGGTAAATCCGCTTTCTAAAGCCGCAGGTCACGAAGG # Right flank : AGCCGGATCGGATCGACGCGCTCGATGCCCGAAAGGGCCCCGGCGGCGAGCATGTCGAGCACATCGATTCGTCAGGGAGCCGTCACGGGCTCGGCAGGGTGCGGAGGAACCGGAGTAGCTCGCGGTTGAAGTGCTCGGCGTTGTCCTGGTTGGCGTTGTGGCCGGCGTCGGGGATGACGACGTACTCGGCGCGGTCGTCGGCCGCCGCCCAGCCGGGCATGTCGCGGGCGATCGTGCCTCGGTCGTCTTGATCTCCGTGGGTCAACAGGCAGGGCACGTCGATCCGGAAGTCGGGATGTCCGGTGCGGCTCACCGCCGTGGCGACGGCGCCGAGGATGCGGATGAGGTCTCGTTGGCTGATGCCGTTCAGCGATTCCCGAGCGAATGCCTCGACGTCGGCGCGGATCGTCGTGGCCGAGGCCATCGCCTTGCGCATGCTGCGCAGCGGCCATAAGCGCAGGATGGTGGGCACCGATCCGACCGCCGCCATCTCGGCCCGG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACACGCGTGGAGGTTGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 9 3718915-3718731 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================= ================== 3718914 34 100.0 41 .................................. AACACCAACGCTTCTGGAAGAGAAGGAAGCGGAACGAGTGG 3718839 34 100.0 41 .................................. AACGACCACGCCGCCTTGCTGCGCCAAGCCCTGGCAAGCCC 3718764 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ========================================= ================== 3 34 100.0 42 GTGGCATCGGCCCTTCGGGGTCGATGAGGATCGC # Left flank : GTGGCCGTCGGTCAGCGACTACTCGATGCCCTGTGGCCCCGGCGTGGACGCTGACCCGGCTTCGTCGGCCTTCGACCGACTCCGAATCCATCTCGGACGGGATGCCAAGGCTCGGCGGCCGGGCCGTGATGCCGGACGCGGACGGGAAGCGAGGACTTCGGACGATCACGTCGAGCCATGTCGAGGACCACGGCTGTTCGGAAACCGCCGTCCGGGTTCGCGGGGCCTGCGGCTGCACAGCCCACCGGTCAGGTCTCCCGCTGAGAGACCTGACAACGGCAGCGGTGACGGACTCGATCTCGGTCCACGCGGCCCGTGCCCGGCGGACGGCCTCGGGCTCGTTCCGTTGAGCATCGCGACACGCGATGTCGTGATCTCGTGCTGAGGGAAGGCAGGCGTCGGACGACACGCCTGGACATTCCGAAGTGTTCTGCGGGCGTGTCGGTCACCAGCCGATAACATCGGAGCATTCAGAACGGCAAGACCCCTGCTACGACAGG # Right flank : GATCTGTCGACGCCGTCACGGCACCGCCGGGTCAATCCGTCAACGACGGTGCCCGACGCCGCCACCGCATGGCGAACGTCGTCATCCTCGCTCGCCGCGTTCAGCCCGCCGTCGCCAAGCCCGTCTGGAAGGCGATCACGACGAGCTGCGCTCGGTCGCGGGCGTCCAGTTTCATCATCGCGCGGTTGACGTGGGTCTTGGCCGTGAGCGGCGAGACGTGGAGCCGCTGGGCGATCTCGTCGTTGGACAGTCCGGTGGCGACGAGTCCGACGACCTCGCGTTCCCGGTTGGTCAACGCCGACAGCCGTTCGGGTCGCGTCGGCTCGGCCCACTGCGGCCCGCTGAGGAATCGTTCGATCAGGCCTCGGGTGGCCTTGGGGGAGAGCAGCGCCTCGCCCCGCGCCACCGTCCGGATGGCCTCCAGCAGTTCGGCCGGCCGCACGCCCTTGCCGAGGAACCCGCTGGCCCCCGCCCGCAACGCCTCGAACACGTACTCGTCG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCTTCGGGGTCGATGAGGATCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 10 3720440-3720003 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================================== ================== 3720439 37 100.0 35 ..................................... GGGCGTGCTCGGCCATCGCCCGCCGGTGCTCGGCC 3720367 37 100.0 38 ..................................... CAACGCAGCCTGCAACGCCGTGGCGAAGCCGTGCCGGT 3720292 37 100.0 38 ..................................... CGCGCAGCTTGCGAGTACATCCTCTGGGGCACGAACGG 3720217 37 100.0 37 ..................................... ACGTGCAACCGGTCCAGGGCCTCCGGATGGTCGGCGG 3720143 37 97.3 67 ..............T...................... GATGTGGGTCGCAACGGGGTCGATGTCGATCAAAGCGGTGCGGCGGTGCTCGGTGCGGTCCACAGTG 3720039 37 81.1 0 ....T.......TGT.........G.....C....G. | ========== ====== ====== ====== ===================================== =================================================================== ================== 6 37 96.4 43 GTGGCATCGGCCCTCCGGGGCCGATGAGGATCGCAAC # Left flank : TGTGCGACCAGACGGGCGGCCTGGAGGCCGCCACCGCCGCACACACCGCCTGGAACGGGGTCCTCATGATCTCCGTGTTCCTGCTCTCCACATCGGATGCCGGACAGTCCACCACGGCCGTCGCGGCGACCCTGGCGACGGACCTGCTGCTGGTCGCACTCCTCGTCCTGCTCGCCCGCCGCACGGCCGTCGCCCGTCTGCGGCAGGCCGTCCCCGTGCCGGCGGCCGGCTGACCGAGGACGGCTGTCGACCATCGACGTCGGCAGCCGTCCCGCCGCGGCGCTGCCACTCCGCCGCGGCTCGCCTGGCCCCGCGCCGGTGGGCCGACCGATCTCACCACCGCATCGCGGCCGCGACGGGTGGTGGGGGTGTCATCGGAGTGGCGCGGGAGGGAGACGTCGTGCGACACGCCTGACCCTCCCGAACCGGCATCCGGGCGTGTCGGTCACGGTCCGCTAACCTCGGCGGTCGTGACACGACGACACCCCTGCTGAGGCAGG # Right flank : CGCGTGGGAGGCCGACAGGTGAACGCCGACGACAAGACCCTGCTGCTGGATCTGGAGAACCTGGGCAGCGTGACGTTGCGGCCGAGGCCGCTTCGTGTCCGCCTTGAGGCGCTCCTGGCAGCCGCAGGTGACCACCACCATGCCGTCGCCGCCTACGCCGTCGCCGACGGCACACCCGACGCGCTCTCCTCGGTGCTGGCGGAGCTGCGGATCGCTCCGCTTCGGGTAGCCCACGAGCCGAATGCCGCCGAGCTGGCACTGATCGCGCACGCCGAGCACGTGCACGCCGAGGGCGGCCGGGTGTTCCTCGTCGGCAGCGCGGACGGGCGACTGGCCGACCTGGTGTCGCTCGGTCGAGTCGAAGTGCTGGTGTGGGAGGGTTAGCCGGTGTCGGCCAAGCTCGCCGACGTCGTCCATGAGGTGCGCAGGCTGCCCAGGCCCACCACGGCGTCGACGGAGGACGTCTCCACGACGGCGGTGCCCGAACCCGAATGGACGCC # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCTCCGGGGCCGATGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.70,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 11 3864101-3863696 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3864100 37 100.0 37 ..................................... GCGGCCTGGGCCTGCCGCTGGAGGTAGTCGGACAACC 3864026 37 100.0 37 ..................................... CCTGCAAGCCACGGATCGACCTCGGCTGCGTTTGCGT 3863952 37 97.3 37 ..................................G.. AAGAGCGACAAGCTCGCGGGCGTGAAGATTCGCGGTG 3863878 37 81.1 37 ...........CG...AA........C.....A.G.. CGGTACGCAGTCGCGGGCGAAGGCGTGTGACGGCTGC 3863804 37 86.5 36 ..........G.G.G...G.......C.......... CGCCGGGCGAGGCGGCCTGCATCGCTCGCCCAGAGC 3863731 36 89.2 0 ..................-.......T...C...G.. | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 92.4 37 GTGGCACCGGCTCTCCGGAGCCGGTGAGGATCGCAAC # Left flank : CAGGGCCAGATAGAGCACACTGAAGTCCAGGGACAGCAGCAGAGTGGGCAGGGCCAGCACCGCCAGCCCGAGCCACTCCCGCCTGCCTGCCCGGAGGGCGTCATCAGCGACCACGTCACCATCTCCTCGCTGTTCTCGGCCGTGTACGCACGTGCTGATCATTGAGACGGCAGACGGGCCGGAAACTGATCGCTCGAGGAGGACGGGCGATCCGCCCGCCGATGCCGATTCGGACGGCGATGTTCTGGCGGGGGAGCGGCTGTCGTGCGGCAGCGCCCGCCCGCGTGGTGACGTCAAGACCGTGCGTCTACCGGGGCGGCCGGACGGACAGCCGGAGGCGCCGCGACGACCGGCCGGGCCGTCGAAAGCGGCCTCTGCCAGGTTCGGAAGGCGAGGCGTCGGCCGACACGCCGGGACAGTCCGAAGTGTTCTGCGGGCGTGTCGGTCACCAACCGATAACCTGGGCGCGCTTGATCAGGTAATGCCCCTGGATGCGCAGG # Right flank : GGATCGTCGTCTGGCGGGGATGGACCACGGTCTGTGACACCGGCCCGTCGGGTCGGGGACCACAGCCGGGCCGCCACGCGGATCGTGAACGCCAGCGGCCTCCCCCACCGCCCTCGGGGCCGGTGCGGGGCGCGGGGGATGCCTGCGACGGGTACCGCCCGCCGGGCGCGCGGGGACGATCGCCGCCGACGAACGCCGATCCCCCGACCACGCCTCGCCGCATGGGGCCGCTGTCTAGCATGAGCCCGTGTCGACCCCATCTGACGCGGCCTTACTCGTTCTGCACCCGTCCAGACAGCGCCGACGGATGTCCGCGATCCTCGGCGTCGTGGTCTCGGCGTTGCTGATCGTGCCCGCCACGATTCAGGCTGGACTGGCGGGATTCCTCGTCACCTCGGCGTTCATGGGCCTGCTGATGGGTCTGGTCTTCTTGTCGCTGACACGATCACGGGTCGTCCTCACGGCGCATCGGATCGGCAGCAGGGGGATGTTCGGCGGAG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGGCTCTCCGGAGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.60,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 12 4069084-4068726 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4069083 30 96.7 35 ................T............. CACGGCCCGTATATCCCTCGTTGGTGTCCTCACGA 4069018 30 96.7 36 ................T............. ACGACGTCGAACGGCCGCCGATCCTGCCGTACCCGC 4068952 30 100.0 35 .............................. TGGAACGCCGGAATGGAGCTCGACGGCTGCGCCGA 4068887 30 100.0 35 .............................. ATGCGCCGCTCGCCGACCTGCCAGAGTCCGGCCCC 4068822 30 96.7 37 ..................C........... GGCATGCGGATCGCGAGCCTCGCCCGGTCGAGCAGAG 4068755 30 80.0 0 .....T..................CTTGC. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 95.0 36 GTCTTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : AATCAGTACCGCAGCCTGCTACGCAATCACCTGCTTCCCCGGTGGGGCGACGTCGCCATCGGGGACATCACCGGCATCGCGGTGGCCGCTTGGTCGAAGAAGGTCCGTGCCACCGGTCACGCCCCCGCGAGTGTCGCCACCATGGTCAAGCTCCTGTCGATGCTGTTGGCCGACGCCGCCGACGAACGCCTGATCCCCGCCAACCCGATCCGCCCCAGCCGCCGAGGACGCCGCCGACGTACGCGCGCCCCCGAACGGCAGTGGGCCACCCACGAGCAGGTCCTCACCATCGCCGATCAGGCCACCGCCCTGGGCGGCGCCTGGGCGGGGACCCTCATCATCACCGCCGCCTGGACCGGCGCCCGCTGGGGCGAACTCCTCGGGCTGCAACGGCACAACACCCACCTCGACGACGCCCGCATCGTCATCGACCCCGACCACGGCGCCCTCCACGAGATCAACGGCAAATTCAGTCTCGGCCAACCCAAGACCGCCGAATC # Right flank : TGCAACTGTGGGGCTCGGTGATCTGCCGTTGAACGAGTGGGGGGGGGGGGCGTCCGGGAGGTCGCTGCTCGCGGCGCGGTGACGCTGGTTGGATCAACGGTGTGGCGGGCCACCACCTTGGTTCCGATCTCGGCCGCGCGGCTTGACCGGTGCTGGGCGGGGTCCCATCGAGGTGAACCCGCAATGCACCGGCTACCCGTGTCGACTCGCTCTGGCATCCGAGCCCGCAGGAGGTCGGCCATCGGCCCATCGGGCTGGGGCGGGATTCGCCGGTTACGGCCGGATCTCGTTGTGGTTGCTCGGTGCCCGTCGGCTTGGTCGGCTTCGACGAGCTGCTGGGAGCAGCTGGTGGGGGGCGGAAGGGGTGCCTCCGGGTGTGTTCGACGACGCTGAACCACGTCCGACGGTTCCCCGAGGGGCTCGACCCTGCCTGCCGTGAACGTAGTGGCGCGGGTGGCGGCTCTTGCGAGGCGTCGTTCATATCGAAGGGTTCACCGGTT # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : GTCTTCATCGCTCCTATGAGGAGTTCCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 13 4279965-4279509 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4279964 29 100.0 32 ............................. GGCCGAAGGACGCGGGTACCTGGTCGACGGAC 4279903 29 100.0 32 ............................. ATGATGGATTGCTCGAACTAGGGTGGTGTCAG 4279842 29 96.6 32 ............................T GGTTACGCCTGGCATGACAACCGCTGAGACGA 4279781 29 100.0 32 ............................. GTCCACTGGGCAGGCGGCATGGACGACGTCGT 4279720 29 100.0 32 ............................. CTTTGGTACATGAGCAGCGAGAACGTAATCGG 4279659 29 96.6 32 ............................T CCGGGACGATGGACCTGTCGACGGCCACCGGC 4279598 29 100.0 32 ............................. ACCGACTTGCCGCCGCCTGGTCGGGCGGCGAC 4279537 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 ATCGGCCCCGCGCACGCGGGGATGGCTCC # Left flank : CCCGTGTCAAGCAGGAATCCCCGGTCGTGGCCAGCGTGCACTACCGTGCCAACGGCAGTGTGCCGCGCGGCACCTGCGTCTTCTGACGCCCGCGCCCACGAATCGCCCTGTCGCCTGCTGAGCCGATCGGCAGGTGAGCGGTGACGGCCGGAGTGAGACCAGCCCTACCGCCCTCCGCAAGCCCGGACCGGCGGCCTTCGCCCGTCTGTGTGGCCGCGTTCGGGCATGCACGAAGGCAGCAGGCTGCCGTCGCATCAGGTCGGTGCCGCGTACTGGCGGTGCGGTGCGGATCCACCGCTGCACGGCGGGCGAAACCACGTGTCGTCGGCCGCGACTGTCGTCTCGTCGTCGGCGTGACCGGGTGGGGTGCGGGACGGCCGCCGAACCCTGTGACGGGCTGTACCGCTCCGGCCGAGGGCGAGCACCCTCCACTCTGGAGTGACCTGTATCACGTGGTCGAAAACGGTGTTCCGAAGCTCTAAACTTCCTGGTCAACAAGT # Right flank : GCCCTACGCCAACACGCTCTGGCCGAACACGACTCCCCCTGTGGTAGCCAGCCCTGCGGCAGCCGCCGTCGACGCCCGCGACGGCGGGCGCCCGTCTCGGCCGCTGCGTCCGCCCGGTCGTGGCTCGGAGCCCGTCTCGGTGTCGGCCGTCGACCGATTCACCGGCGAAACCGGCTGCGTCGCGGGGCCTCGGCGGTGTAGATCAGTAACCGACGGCTCCCGGCCGAACACTCGACGTCCGCGCGGGGGCCGGGAAGGAGCGTGACGTGGTGAGCGTCGAGGTGTCGATCACGCCGGGAACGAGTCGGTACGACGAGGACGAGGAAGCCTGGCAGAGCCAGGTGTCGACGCTGTACGCGGCGCTGCTCGACGAGGTCGGCGGCGTCACGACGGGCGGTGCGGCCGTGCCGGGCGCCAAGGGCGCCTGGGACACGGTGTTGATCGCGTTGGGCTCCTCCGGGGCGCTGACGGCGGCCGTGGCCTGCTTCCGATCCTGGTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGCACGCGGGGATGGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 14 4281325-4280686 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4281324 29 96.6 32 ............................A CCAATCAACGACTGCAAATCCTCCCCGCGCAG 4281263 29 96.6 32 ............................T CTCGCGACGGCACTGGCCCTGGCTGGCCAGTC 4281202 29 100.0 32 ............................. TCCGTGCCGCCCCGGGCACACCAGACCTCCAC 4281141 29 96.6 32 ............................A AGCCACAGCAAAAGAAGCTGAAGATCTAGCTG 4281080 29 100.0 32 ............................. TGCCGCACTGCGGGAGCACCAGGCCGACGACC 4281019 29 100.0 32 ............................. TGCGGGGAGTACTCGGTGAACGTGTCCAGCTG 4280958 29 96.6 32 ............................T CCGGCGGCATGGGGCAACCGAAAGCCGGGATA 4280897 29 96.6 32 ............................G CGTTCGCGCGAGTTCAGCGACGGTCGCCCACG 4280836 29 96.6 32 ............................G CCACTGAAGGGGACCGCGGCGGCGCTGTACGA 4280775 29 100.0 32 ............................. TGAGCGAGCGGTACCAGGTCTCTCGGCAAGTG 4280714 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.8 32 ATCGGCCCCGCGCACGCGGGGATGGCTCC # Left flank : CGTCGAACCCCGGAACGACTCGGCGACGTCGCTCGCGACGCGGGCCTCAGCGAACGCAGGCTGCGCACCGTCTTCACCAGCGCCGTCGGCCTCTCGCCCCGTCGTTTCGCCCGTGTCACCCGGGTGCGGACGGTCCTGGCCGCGACCAGCGCGGGCGTGGACTCCTGGTCCCGGCTGGCCGTCGACGCGGGCTACTACGACCAGTCGCACCTCACGGCCGAGTTCCGCGAGGTCATGCAGGTGACGCCGGGCCGCTTCGCGGCAGGCCGTCTGCCCGAGGCCGCGCCGTGTCGGAGCTGAGGATCGCGCTGCCTCGCCTGAAGAGCCTCGTGGACGGTCGTGTCGTCGACGGCGTGATCGAGCAGGCGCGGTGGCGGCAGCCGAACACCGTGGCGCGCGGTGCCGCTCCGACCGAGGACGGGCACCCTCCACTCTGGAGTGACCTGGATCACGTGGTCGAAAACGGCGCTCCGACACTCTAAACTCCCTGGTCAACAAGT # Right flank : CAGGCGGCGGTGGAACGATGGCAGGGTGATCGTGCCTTCGGCGTCGCTGCGCTGGGGCACGGCCTACCTGCACCAGCGGGTCAGTGTGCGCATCGACCGTCCCGCAGGAAGCCTCCACCTGCGGCACGGCTACCGCTATCCGGTGAGCTACTCGAGGGACTCCGGGTTCCTGAGCCCGGAGGAGGAACGGGTCTGGGCGGACAAGGGTCGGGTTCTCGCAGCCCGTGTCAAGCAGGAATCCCCGGTCGTGGCCAGCGTGCACTACCGTGCCAACGGCAGTGTGCCGCGCGGCACCTGCGTCTTCTGACGCCCGCGCCCACGAATCGCCCTGTCGCCTGCTGAGCCGATCGGCAGGTGAGCGGTGACGGCCGGAGTGAGACCAGCCCTACCGCCCTCCGCAAGCCCGGACCGGCGGCCTTCGCCCGTCTGTGTGGCCGCGTTCGGGCATGCACGAAGGCAGCAGGCTGCCGTCGCATCAGGTCGGTGCCGCGTACTGGCGG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGCACGCGGGGATGGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 15 4641833-4642335 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4641833 30 100.0 37 .............................. TCGCCAGCCACTGCGCCGCGAAGTTCGCCGTGTTCCG CA,C,TG [4641836,4641840,4641842] 4641905 30 100.0 36 .............................. TGGTGTCCAGTTAATGGGCGGGATGCGGCGGTTCGT 4641971 30 100.0 37 .............................. CGTCATGCCGCCTCATCGGCACCGCCGGGCCGGACGT 4642038 30 100.0 36 .............................. CGTCCCCCGCCGGCCGACCGGCGGACGGGTTCGAAT 4642104 30 100.0 38 .............................. ACGGGGCCGATTCGCATACAGCACCTCGCCCGGATCGG 4642172 30 100.0 37 .............................. GGGAGCAGCGTCCCCCCGCCGCGTCGGGGCGGGTCGT 4642239 30 100.0 37 .............................. TTCGTCCCCCCGCCGAATTCCGCGATAACCCCCGTGC 4642306 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 37 GTTGGAACTCCTCGTAGGAGCGATGAAGAC # Left flank : CTGGGCGTGATTCAGCGTCGTCGAACGCGCCCGGCAGCTCCCATTCCGCTCCCAGCGGCTGTGCCCGGCAGCTCGTCGAAGCCAGCCGAACCGACGGACGCCCAGTAGCCACGACGAGGTCCGGCGGTCGCCGGCGGATGCCGCCCCGGCCCGATGGGGCGACGGCCGACCTCCTACGGGCTCGGATGACCGAGCGAGTCGACAGGTGTGGCCGGTGCATCACGAGTTGGCTTCGATCGGCATCCGCCTAGCAGCCATCGAGCCGCGCGGCCGGGATCGGAACCGCGGTGGCAGCCCGCCGTGCCGTCGATCCAGGGCAGCGTCGGCGCGCCGCGAGCGGCGGCCTCCCGCGTCGTGTCCCCGACTCGTTCGGCGGCGGATCGTCGAGTTCCACGGCTCAACGTAGCGAGCCGTCTTCTCGGATCGTCAACGAGCGTCGGCGACAGACTTGTGTGGGAGCGATGACGACGCAGCGCCCCTCCTGTGCCCGCCGCCTCGAG # Right flank : CCCGAGAGTAAAGTCGCAGGTCACAGCACCTTCGGGGAGGCGCCGGAGCAGCAGTTCTGCAGCGTACCGGAGGTGTGACATCAACCCCCGGGGGTCTGCTGAAATCGGCGGCTCCCGGGACGCCGGGTGGCTCGCAATCGCGAGGGCCGCCGGGTGGGTTGGATTCGGTGTGGGAAGCCGACGGCGGCGGGCACGAGGAGAGGCCGACGAGCCCGATGGAGACGAACCGGCCGGGGGTCGCCGTCTGCTCATCGAGGTCGCGTGGTGGTGGTCAAGGACGACTGAGGGCGGGGAAGGGCTCGTAGGCGCTGCCGCCCTGGGTGCGGGTGAAGGCGGTCCAGCGGTCGTGTTCCGGCGCGGCCAGGCGCGCACCGAGTGCCACGGCGATGGCGACGGGGCCGTTGAGGAAGATCGCATGCCGTCCGTTCCTGGCTCCTTCAGGCAGCGGCGCCGCGCGCCAGGCACGACAGGTCTGCTCCACCACCCCGCTGAAGGTCTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGAACTCCTCGTAGGAGCGATGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 16 4644455-4644026 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4644454 30 100.0 38 .............................. GCGTTGGGTGCCGACCGGGATCACGATCCGCAAGCCTG 4644386 30 100.0 37 .............................. GTGTTCAGCGCGGACGCTGTGGTCATCTCCGCCTCCG 4644319 30 100.0 36 .............................. ACGCCTGCTCGGCGGAGGTCCGGCCCATCGCGGCCC 4644253 30 100.0 35 .............................. TGCACTGGGACGAGACGCTCGGGCGAACCTCAGGT 4644188 30 96.7 36 ........................G..... GCGAGCACGGTGTCGATCGTTGCGACGATGTCGGTC 4644122 30 90.0 38 ..........TT....C............. AGCGGCAGCCAGGCGATGACGTGCCCGACGCTGCCGAC 4644054 29 80.0 0 ...T..G......-.GT..A.......... | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 95.2 37 GTCCTCATCGCCCCTAGGAGGGGTTCCAAC # Left flank : CGACGCAACAATGGGGTTCGCGGGTCGGACATGGTCGCGCGCGGTCCGCTGTTCGAATCTCCACGGAAGACGGCCGAGCGATTCGCCACTGACGAGGCAGCCGTCAACGGCACCCAGGCAGTGAAGGCTCTGCTTCCGCATCGGGGAGAAGCGCGCCCGACCGTGCCGACCCGCTCGACACAGCGGATTTCCCAGCCACCTCGATCGAACCCGGTGACGAAGACACCGTGCCGGGTGATACAGAGCGTCGACAGGGCTCGCGGATCTCCGAGCAGGGCGCCTGCCTACGATGAGCCACGGCAGCCGAGCCCCGGCAGGGCGCGTGCACGATGCGGGCTCGGCGAGGCACGCAGACTGGAGGTGGTCGGTGGTGCCGCTCCCGTTCGCCACTCCGCAGTTTCAGCAGACCCCCGGCGCGCCATGTCAGACTGCGGGGTCTCTGCACAACAGCTACGAAAACACCCACTCGCAGGCCCGTCTACCTGCGGCTTTACTCTCGG # Right flank : ACCGCAGGGCCGTCGGCACCGGAGGGAGCGCGTCGATCAACTCGATGCTCGGTCTTCATCGACTCTGTGAAAAGATCCACCGCGGCAAGCAGCCTCTACTTCGCTGATTCATCGTGTCCTTATCGCTTGACGCGGGAGCCTGATTCGCCGGAACCAGGGCGTCCACGAGAGCTGCGGCCCGCGGAACCCTTGACCGCCCAGCGTGGTCATGTCACGAAGGCGCACAGGATCGAGAACGGATGCCACGGGCGCGGGTTGCCGGAATTAGAGTGGCGGAGTTCTGCCGATTCGATCACGCCGCATCGGGCGTGCATCTCCTGAACGGACGGTTGTGGTGACAGGTTCAACAGTGTCGGGTCCGCCCCGGCTGGACGTGGTCGGCTCCGGTGGCACCACGGCGCGCTCATCCGCCGGGTGGGCGCTCGTCACCGACGGCACGGCGGCGGTGGCCGTGGGCGCGACGGTGGCGGGCGGGTTCGGAGTGGAGGCGGCGAAGTCGT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTAGGAGGGGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 17 4653892-4653598 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 4653891 30 100.0 36 .............................. CTGGCAGCAATGCCCGCCCGTCCGGCCGGACATGCG 4653825 30 100.0 36 .............................. TGCGGTCGCAGCCCGAGCGCACCGCACACCGTGGCC 4653759 30 100.0 36 .............................. GCGTAGAGCACTGCGGGTTCCTCGCTGAGGTAGGCG 4653693 30 100.0 36 .............................. TCCCGCTCGATGTTCTCCCGCAGCAGCTCGGCCGGG 4653627 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 100.0 36 GTCCTCATCGCCCCTAGGAGGGGTTACAAC # Left flank : GTGATCGGCACGGACTCTGCCGACCGGAGGCGGGCGTTCAATGGTGCCGAGAGATCACGAGTGCCTCACGAGGCGAGTGCGTGTCGGGGCGGGCCGTCGCCTGCCAGAGGGCACTTCGCCTGACCGGGGACGACCGCGCGACCCGCCGATACCGGGCTGGGACATGGCCGGCCCGTCGCTGGTCTGGTCGGCGGAGATCGCCGCTCGGAATGTGTGCGATGTCGTGCTGCGCACCGCAGACGCGGAAGTGAGCGGGGCGGCGAAGCGGTGTGCGGGGTCGGGGATCCTGGTGCCGATACGATCGTGTCCGACCATCCGTGACGGGTGTGGCCAGGGTCCGACAGCGCGGGACGGTGTTGCGAGGTGATCACGTGGGGCACTCGCCCTGGCACCGAATTTTCAGCGGACCCCCGGGGTTGGACGTCAGACCGCCGGTCCGCTGCACAATCCGGCTCAGAAGCACGCTTGCCATACCCGTTGACCTGCGGCTTTACTCTCGG # Right flank : ACAGGCACTAGCCCGAGCCGCTTGCGCGGCGCCCCGCGTGTCCTCATCGCCCCTAAGGGTTCCCACCGGGACGCGGAGCACTACGAGAGCACCCGCCGTGACCGTCCGCCGCGTTCTCACGAATGGCTCCACCCGTCGACGTCTAGGCCCGTGACAACGGTCCGAAGCACCCCTCACGGCCCTGCGCCGTACCCCCGTCACACCGGACGACGCAGCCTCGCGGCGAGGGCTCGTCGTAGCCGAGGCGAGCTACCGGATACGGAGTCGACCGCCTCGCCGTCCCGGCTTCCCGGTCTCTCAGGCCTGCCTCGGGGCGGGGTTCAGCGTCGGATCCAGCCGAAGCCTGCGGCGTTGCCGCGTCCGAGGCCCCACGACCACAGGGCGCGTAGTGCGGTGGGCGCGCCGTGGAGACGGACGTTCGCGGTGGCTCCGGTCTGTCGGCCGTCGCCGACGGTGAAGGCCCGTTTCGGTCCGGTGGGGGTGATCTCGTCGATGGTGAT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTAGGAGGGGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 18 4693118-4694005 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4693118 29 80.0 36 ..AT..-G...........G......C... GCGGGGAGAGGGACAGCGTTGGAATCCTGGCCGCCC 4693183 30 93.3 35 ........G.................A... CGCAGCCGCTGCTGTAGGAGTTCGGCGGTCTCCAC 4693248 30 93.3 37 .........T...............C.... CCGATCGCCTCGGCGGCGGCCTCCGACCACCGGCCTC 4693315 30 96.7 35 A............................. TCCCGTTCGACGCGCCACCACAGGACCGCGGCGAT 4693380 30 96.7 35 ...................G.......... CCGGTCCTGGGCCAAGGCCTCGGCCAGATCAACGC 4693445 30 96.7 38 .........................C.... CCACGGGACGCCCTCGCGGCGTTCGACCGCGCGCACCC 4693513 30 100.0 36 .............................. GGGACCTTCCTGGGCCGGTTCAGGCTGCCGTTCTCG 4693579 30 100.0 36 .............................. TTCGCGGGTGTCCAGGCCCGACGTGCCGACCCTCGA 4693645 30 100.0 37 .............................. CGGGGGTCACCTGCCCCGGCTCGGTCTCGTCGATCAT 4693712 30 100.0 36 .............................. CGGGAGCGCGCGGGCATGCCTGCCCCGAGTGCGCGT 4693778 30 100.0 37 .............................. CCGGACGGACGGGACGGGCCGGTCGGCTGGGCCGGGA 4693845 30 100.0 36 .............................. CCGACGCGGCGACGGTGACGGTGACGGCCCTCGGGC 4693911 30 100.0 35 .............................. ACCTACACCGCCCTGTCCATCGCGACCGCCCTCGC 4693976 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 96.9 36 GTTGCGAACCCTCGTAGGGACTATGAGGAC # Left flank : CCCGTGACACAGGACCTCACGGCCCTGATCCGACAGGCCTACGGCGGCGACCTCACCCGACCCGTCTCCTTCTTCATCGACACCCAACTCAAGCAACGCCCCTACGATCCCGTGATCAACGACCTGGGCGAACTCGGTCTGCAACTTCACGAGTTCACCGACCCCAACTTCTACGTCGCCTTCGGATACAAGATCACCGACGACACCCCCGTCACCTCCAGCTGGGTGCTGGAGTTGTCGATGGTCGGACGCTTCGGCGTCCTGGCCCGGACCGCCCACAACGAGTGGCATCGGCTCCTCTATCCCGCCGAGCCCGACCTACACCCCATCGAAGCCGCCATGCTCGACATCCTCACCACACACCAGATCACCCTGCCCACCCGTCAGGAACTCGAACAACCTCTGGAGATGACCCTCGACTTCACCGACCCCGAAAACGTCCGTGTCTACCACGCCCTCTTCTCCGACGAGGATCTCCTCCCCTGGCAATTCTCACCGTT # Right flank : CCCGAGAGTAAAGTCGCAGGTCAGCACCTCTGTCACCGACGCTTTGGAGGCTGATTCTTCAGATATCCTCCGGTTTGACGTGGAGGCCCGGGGGTTCGCTGAAGATGAGTGGGTCTCGGTGATGATGGTCATCGGCTAGTGAACAGCCCCCTCTCCGTCAGTGGGGACCTCTTCACGACGCGCATAACGGCATCCCTTGCTCGTCCGGACTGCTCTGCTGGCCGTCGAGCCAGACCTGGGCGTACTCGCCCGCGCCGAGTCACGACCACCGGCTCGGTCCTCGTGACGTCCAGCACAACCCACTCGGGTCAGTTGCTCTTCAGGACGGATGTTACGGCTTGGACCCGAGCGCCTCAATCGTGCTGAAGTGAGCCGCCCCGGCACACGAGACGAACCTGATCAGTTCACCCCGCGTTCTGCATGTCTGTCGGCCGCGAAGCGGTGTACACCGCCACCCAACGGCGGTCAGTACTACCCATCGTCGAAGTCGCGCTGCTGAA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCGTAGGGACTATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 19 4703496-4704512 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4703496 30 100.0 36 .............................. AGGTAGAGGCCGTCGATCGCGCCGGCCAGGCGACCG 4703562 30 100.0 37 .............................. AGAGCCGGTCAGCCGGAGAAGCGGGCGCGGTACTCAT 4703629 30 100.0 34 .............................. CCGCCACCCGGACCAGTCAGGCCGAGGAGCAGGG 4703693 30 100.0 37 .............................. GGGCAAGCCGCACCTCGGCGCGCAGCCTCGCTGTGGT 4703760 30 100.0 36 .............................. CTCCGGCCTGGATGGCCTGCCCGCTGGAATCGCCCT 4703826 30 100.0 34 .............................. GTGGAGCGTTGGCGGGCGCGTCAGGAGCGCCGCG 4703890 30 100.0 37 .............................. CCCTGGCGGACGGCGTGGCGGTGCGGTAGCCGCACGC 4703957 30 100.0 37 .............................. CCGGGTTCTCGGTCCAGTCCCTGGCGACCGTGCAGGG 4704024 30 100.0 36 .............................. ACCCGCCCGGCCTGGGGGCAGCGGTGCGGGGAGATC 4704090 30 100.0 36 .............................. ATGACGACCCGTGCGCCGCGTGACATCCGCGCCGAC 4704156 30 100.0 35 .............................. CAGAGCTGAGTGGTTCAGAGGCGGCACGGACCCAG 4704221 30 100.0 37 .............................. AAGCCATCCCGCAGGCGCGGGCGCGGGTGTCCGAGAG 4704288 30 100.0 31 .............................. TCCATGAGATGACCGAGGCGCCTCAGCGGTC 4704349 30 100.0 37 .............................. ACGCTCCCGAGCGTGATCCCCGCGCGCGGGTGGTCAG 4704416 30 96.7 35 ...............G.............. CGAGGGTGATGCCATCCAGTCCGCTGATCGACCCG 4704481 29 90.0 0 ..-...................GC...... | A,A,G [4704502,4704508,4704511] ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.2 36 GTCTTCATCTGCCCTAGGAGGGTTCGCAAC # Left flank : GTCAAACACCGAACCCTCGGCCGCAACGTCTCCTACGACGAACTCATCTACCTCGACGCCCTCGCACTCACCCGCACCTGCCTCGAAGGCAGCACCTACACGCCGTTCCGCGTCTGGTGGTGACCATGTACACCATCCTGGTCTACGACACCGCCACCGAACGCAACGCCGCAGTCCTCCGCACCTGCCGAAAATACCTGCGACACCAACAACGCAGCGTCTTCGAGGGAGAACTCAGCCCAGCCCAGATGCTCCGACTCCGCACCGAACTCGAACAACGCATCGACCGCGCCTACGACCACATCCTCGTCTACACGTTCCCACCCGGAACCGACCCCAGACGCCAATCCTGGGGCGGCCCCGACGACCAACCACACGACATCCTCTGACCCCCGCATTTCAGCGGAACCCCCGGGCCGGACGTCAAACCTCCGGTCCTCTGCGAAAACACCACAAAAACCCCGACTGGGAACGCCGGTGACCTGCGGCTTTACTCTCGG # Right flank : CAACCGAAGTTCACGGTGTTCGAGTCGCCACGCGACGACTTCGAGGGTCGCCAACCGTGTGCCCCGCAGGTGCAGCGCCCCGGTCGAAAGATCGCGGAGAGCGTAACCATCGTGACAAGCACAACGCGCAGGCATACGTCCACATGGCAGCAGTGATCACACGTGGGTAGCGGCACCTGCGATGCGCACCGTATGGCCCAGGGGAAGGCAGCACAGAGAAACTCCGCCCGTGAACACCGTGCAGGCGGCACAGGGCCGAAGGCCCACAGAAATCGTCAGACCAAATCCACTACCGACAACGACCAATCACTCACTCCCTATGTTCGGACACATGATGGCGTAGTGATCGATCCCGACGGCAGAAAGGCACCGCATCCGGTCGAACGAGCATGCCCCCTGCGCAGCCCTGGTGGCCGTCGACCAGAACCTTCGTCTCTGCGTCGAGGGCGTCTCGTCCGCAAGCTCAGGCTCGGACGGTCGTCCAGTGTCGGCTGATGCGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCATCTGCCCTAGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 20 4743475-4746064 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4743475 28 100.0 33 ............................ GCGCGGCGGCCCGGCCTGGGCGGCGGCGCCGGG 4743536 28 100.0 33 ............................ GACTCCCGCGCTTCGTGCGGACCTGGTCCTCGG 4743597 28 100.0 33 ............................ GGCCGACCCGCTGCACCGACGGCACCCGGTGAC 4743658 28 100.0 33 ............................ GCGGCCTCATTGACCGCCACCAGGTCTACCGAT 4743719 28 100.0 33 ............................ GGAACTTCTCCACGAGGAGGAGTACGACTACCG 4743780 28 100.0 33 ............................ GATCCCGGGGCTGCGGCCCCCTCGACACCGGCG 4743841 28 100.0 33 ............................ GTCCTACGGCGCGCTGCTGCGGTGGCGGGTCGA 4743902 28 100.0 33 ............................ GCTCGGCGACCCGGTCGAGCACACCGGTGTAGG 4743963 28 100.0 34 ............................ GTCTGTGCGTGCGTCATGCTGCTCCTTCGCTCGT 4744025 28 100.0 33 ............................ GCTGGCACAGGGCGACGTGGTCGTAGGCGCCGT 4744086 28 100.0 33 ............................ GGCGCTCCCCGGCACTGCGGAACCCCGGCACCC 4744147 28 100.0 33 ............................ GCGACGCGCGCGACGTAGGGAGTGGACATCGAG 4744208 28 100.0 33 ............................ GTCCGTCCGCCCGGTCGAGGGTGTCGATGTCGA 4744269 28 100.0 33 ............................ GCTGTTCGCACTCTTCGTCCCATGCCTTCCGCG 4744330 28 100.0 33 ............................ GCACCGGAACGTGTCGCCCGCGACAGTCCGGAA 4744391 28 100.0 33 ............................ GCGGCACCCGTTGGATCGGTTGGTGATCGATGC 4744452 28 100.0 33 ............................ GCGACCTGGACGGCATCGGGGTCGGCGGCGCGG 4744513 28 100.0 33 ............................ GGCGTCATGGACGGTGCCGATCCAGCCGCCCGA 4744574 28 100.0 33 ............................ AGAACAGCGGCTCGCTGAGCACGATCAACCCCG 4744635 28 100.0 33 ............................ GACCCCCGCAGGCTGCGGGCGAGGTTCTGGCGC 4744696 28 100.0 33 ............................ GCCCTCAGCAGCTTGGTCACCGCAGGCCGCTGC 4744757 28 100.0 33 ............................ GGTGGCCCGGATGCGGGGGCCGAACGGGCCGCG 4744818 28 100.0 33 ............................ GTCCCTTGCCGCTGTTCTCAGCGTCGACGGCAT 4744879 28 100.0 33 ............................ GCCACGCGCCAGTACGCCCGACGCGCTCCCGTG 4744940 28 100.0 33 ............................ GCACTGCGAATCTGATAACGAGATGGTCACCCA 4745001 28 100.0 33 ............................ GGCTGATCCGCCCATGGCCTGGCTGGAGATCCT 4745062 28 100.0 32 ............................ GCCCAGCTTGACACATCCTCGGTGGGCTGTCT 4745122 28 100.0 33 ............................ GATGGCGTGGTGGTCAGCAGGGGCGCGCAGCAG 4745183 28 100.0 33 ............................ TTTCTTCCTGATGCTGTGGGCCTTGACCTATGC 4745244 28 100.0 33 ............................ GGACGGGCGGGTCTACTCCCTCGACGCCCAACA 4745305 28 100.0 33 ............................ GGACGGGCGGGTCTACTCCCTCGACGCCCAACA 4745366 28 100.0 33 ............................ GGACGGGCGGGTCTACTCCCTCGACGCCCAACA 4745427 28 100.0 33 ............................ GGCCATCGTGACCGCGGTGACCGCCCTCGTCGG 4745488 28 100.0 33 ............................ GCGTCATCTCGTTCTGATCTGACGGGGGGTTGG 4745549 28 100.0 33 ............................ GTCCACCATGGACGACACGATCCGCACGTTGCC 4745610 28 100.0 33 ............................ GGCCTACCAACTGCGAAAGCTCACCCACCGTGC 4745671 28 100.0 33 ............................ GGGCACACCCCGTACCCGCGTCGTCTGACCGAC 4745732 28 96.4 33 ............T............... GGTGGACCGCCCCCCACCGATCCGTCCGCCGTT 4745793 28 96.4 33 ............T............... AGCGCTGCAATCCGGCCTCGCCGACGACGAACA 4745854 28 100.0 33 ............................ GACGTGCACTCCGGCGGGCTGCGGTTGGAGGGC 4745915 28 100.0 33 ............................ GCCGTGGCTGCTCTCGATGAGATCGCGCTGACC 4745976 28 96.4 33 ......................C..... GGCCGATACCAGGAGTCGAGCAGTGTCACCCGA 4746037 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 43 28 99.7 33 GTCCGCTCCGCGCAAGCGGAGGTGAGCC # Left flank : GGACGTTCCCCGCGTTAACCCTGACATCCAGCCCGCAGCCAAAGCAAAGTACAAACTGGCCGTGACCACCGAGAATGCTGGGGCAGCCTCCCGATACTCAATACCCTGCGCCCGAGCTTCGGTGTCCCGCCCACGCCTCAGTGAGCTGGACATCCGTCATCTCGGAGAGTGATTTTCACCGAATCGCCAGCGGCTATGGCAGCGATGTTGCCGAGACAAAAAAGCGACCAAGGGGCTACGGAGGCCATCAGCAGGCGAGCGCCGCGGACTGGTTCGGCGTCGAGGTGCTCGGAGAGCCTGCTGACCTGCAACACAACTGCGCCCGCCGTCACTGTCCACCCTCACCCCACGTTAAGGTCAAGCACACCCATCCGACGGTCGCGCCGCAACAAGAGATCACCTGAAGAGCGCCGTGACCTAACCACACACAACCCTCGGGATTCGCAAGAATGAAACATCACAAATTGGCAACGCAGTAGAAGAAGTGCAGGTCGGGAAGG # Right flank : CGCAGAAGCAGACATGGTATCCAGCGGTCCGGTGTCCCTCGGCGTCCTCGCTGCGCTGGCACCCGTCCACGGTGCCGATCATGTGGTCCGGCAAGTATGAGGCTGACGACTACTCAATCGCCCGCTTGGAACGACGGCCACTGACTGCACCCCAGGAAGGCCCCGTGGCGCCATCTGCTTGGCAGTGCACGCAGGAGGGAGGATGCGGGGCAGGCCCGGGCGCCGAGGTTCCCCCGAAACCTACCGCGTGGCTGGGCAGGGCTTCAGCGCGAGGGCAGAACGCCACTCCCACACCCTTTCACTTCCGGGTTGATTTCGTGCTCGGAAAGTAAGAAAGGCGAATAGTTCCCCACGTTCGAGTGATTTAACCACCTCGAATGAGTTACATGGCCTCTTAAAGTTGCTCGGTGAGACCGCCAATCTCGAGAGCCACGCCGCGATCCTGATAACCTACGCCCGGACTCCACTCCTACCTGTTCGGTTCCTTCGACCTGGAGGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAAGCGGAGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 21 4759013-4756854 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4759012 29 100.0 32 ............................. GCGGAACCGGGTGGTGTCGCCCTCGAGTTGAT 4758951 29 100.0 32 ............................. CCGCACGGATACCGCGCCCGGTGGATACAGAA 4758890 29 100.0 32 ............................. GTGAGACGTTCGCGCAGGCGGCGCTTCGCGAA 4758829 29 100.0 32 ............................. CCATGGTCGAACTCGGGCTCCTGACACCCTTG 4758768 29 100.0 32 ............................. GTGGCACCGGCCACCACCGCGGCCACCAGCTC 4758707 29 100.0 32 ............................. GTCGCCTTCGCGGCGGCGTTGCGGCGTGAGGG 4758646 29 100.0 32 ............................. TTGCGCCGCACGATCATCGCCACCACCGTCGA 4758585 29 100.0 32 ............................. CACCAGCACGCTGTTCGTGTTCGTCGACCCCG 4758524 29 100.0 32 ............................. GGTCACGGACATGGGGTCTCCTTCGCGGGAGG 4758463 29 100.0 32 ............................. GCCGGGGGTTGGATTTTGCGGCCGCGCTCGGC 4758402 29 100.0 32 ............................. ATGGCCTCCGCAGGCCGGGGAGCTGGCGCTGC 4758341 29 100.0 32 ............................. TGCGTGATGCGGTCCCACACCCACCCCTCGAT 4758280 29 100.0 26 ............................. CGGCCAGCGCTCGGACTCCAGGGCAG 4758225 29 100.0 32 ............................. ATCGATGCGGTCGTCGCCCTAGTCATGGCCCT 4758164 29 100.0 32 ............................. ACGGCGGCCGCGGTGGGCGACCTCGCCGCCAC 4758103 29 100.0 32 ............................. ACGCCCCGGATGCTGCTCGATGAGCTGGTGGG 4758042 29 100.0 32 ............................. GCCGACGGGCTCCGCCCACCCGAGGCGCTCCG 4757981 29 100.0 32 ............................. CTGCAGGTAGTCGATCACGACCAGGTCCAGGC 4757920 29 100.0 32 ............................. ACGCGACATGCGGCCGAGCTGGAACGCATCCG 4757859 29 100.0 33 ............................. GACCCGGAGGCCGCGGCGATCAGGTGGGCGCAG 4757797 29 96.6 32 ............G................ GTTGACGTCACCACGGATGGTGCGGCGTGTGA 4757736 29 100.0 32 ............................. ATCCAGGAGCCCACGAAGGACGTCTTCAAGAA 4757675 29 100.0 32 ............................. ACCGGCGGGCATGATCATGGGTGGGCCGGGGT 4757614 29 100.0 32 ............................. CCAACACGCGGACCGGGCCTTGACCGTGCGCC 4757553 29 100.0 32 ............................. TTCGACGCCGGGATCGACGTCCAGAACCGGCT 4757492 29 100.0 32 ............................. GTCCATCACGACGTCGGCACCGCCCTGGCGCG 4757431 29 100.0 32 ............................. GAACGCGCTGCGGACGGAGGTGTGGTCGGGAT 4757370 29 100.0 32 ............................. TCCGAGATCGGCCGGATCACCGGGTTCCTGGA 4757309 29 100.0 32 ............................. CCGGCGGGCTTCGCCGTCCCACCAGCCGGGCG 4757248 29 96.6 32 ............................C GCCTCGACGAGGCGACCCGCCGAGGGAAGGCC 4757187 29 100.0 32 ............................. CCGCGTGATCGCCAGGTTGCGCGACACCCCTT 4757126 29 100.0 32 ............................. TGAGCCGTCCAACTCCGGACAGGGCGGGCAGG 4757065 29 100.0 32 ............................. ATGCTGCGAACCCTCGAACGGGCCGGCTGGCT 4757004 29 100.0 32 ............................. AACGTCGCGGGCATGAAGGACGCCATCCGCAC 4756943 29 93.1 32 ........T....G............... TGAGTTCTGCGGTCCGCCTGGCGTAGAGGTGT 4756882 29 69.0 0 ..C......A.A.G...TC..A..G..T. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.8 32 GTGCGCTCCGCGCAAGCGGAGGTGAGCCG # Left flank : CCAGAACACATACCGAGAGCAGAATCACACCATGATCGGTTGCTCCCAGAATGCTCCCACCAACGCAGAGAACCCCGCCGGTGATGATCACCGACGGGGCATCTGACCAGTGTGTATAACTGGTGGGCGATACAGGGATTGAACCTGTGACCTCTACCGTGTCAAGGTAAGCGGCCGTGCCCGCTGACCTGCGGAAACAGAGAAACCGTAGGTCAGTGGGCGCCGTTCGACACGGTTCAGCGCAGTTGGGTGTGGCTGTGAGGGCACTGCGGCTCCCAGCCTGCTCCCAGATGACCGCTCCCACAGGTACCGGTTCCGCTCCTGTCTGCGTCGACTCCCACCTGGTTAAGGTGGAGTCTGGTGGGCGTTCGCGCTGTCACTTTGGCGATCAATCGGAGAGTGTCTTGATCTGTCTGCAGTACGATCTGCGACTTCCCGAAACCGCACTGACAGGACATTACGAATTGGTCACGTGGTAGAAGAGGTGCAGGTCGGCAAGG # Right flank : ACTCCTCATCGGCTCGTCTGCGTACCTCGACGTGTTCCGCCACGTGAGCGCTGACCTGATCCTGACGCTGTGGGGGTGGGAGTCCGCACCGATTGAGCGGCGTAACGGATCTGCGTCTCGCCTCGCGTGAGCTGGATGGAGGCAAGCTAGAAAACAGCGCGTGGACGTTGTAAGGCGATGACCTGGGAGAACTCGCAGTTGTATCGACAGTGGCCTATCTGAGCGACGATCCTGTCGGGGGCCGCTGATCTACTACGTAGCGTGTCGTTTGATGACTCTGTGCATGCTGATGTGAGTGGTTGCCAGCTGGACGCCCGGTTGTGGGGTAAGGAGAAGGGCCTGTCCAGGCCCTACCCGGTCGTGTGTCACCTTCTCGACACGGCGGTGATGGCGGGAGCGCTGTGGGATGCCGTGTTGTCGAGGGCTTTCCGTCGGCGGTTGGCGGATCGTGCGGGTGTGTCGGTTGCCGTCATGAGGCGGCTGGTCTCTTTCTGGGCAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTCCGCGCAAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 22 5000918-5000401 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5000917 29 100.0 32 ............................. CCCGGTGTCGCGCCCGCCGCGCGCCGGCGGCA 5000856 29 96.6 32 ............................T GCACCACGACACTGACAGCAATCGGGGCACTC 5000795 29 96.6 32 ............................C GCCGTGATGTCGGTGATCTCGTTGACGCTGAG 5000734 29 100.0 32 ............................. CTACGACCGGCTGGGGGAGATCGGCAGGTTGC 5000673 29 100.0 32 ............................. GCGGGCGGCGATGGCGTCGGCGGTTGGCGGGT 5000612 29 100.0 32 ............................. GCCTGGTGGTCGTCGGTTTGGCGCTCCCCCGC 5000551 29 93.1 32 ...........A................C CACCTCATGGAGACGATCCTCGACAACCAGAT 5000490 29 93.1 32 ....C.......................C CCGGACGTGGACATCCACGAGCCGCCGCTTCC 5000429 29 89.7 0 ...CG.........A.............. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 GTATTCCCCGCGCAGGCGGGGGTGAGCCG # Left flank : AGCGGGCGGGCGTCTCGGTGCTGGTCTGCGACCCCGAGGGGCCGACCGTGGCGACGGTCCAGGACGCGCTGGACCTGGTGGGCGCGGTGTTCCTCGGCGCCAGGGCGGTGGCCGTCCCCGCCGGCAGGCTCGACGAGGCCTTCTACACGCTGAGCACCGGCTTCGCGGGCGAGGTCATGCAGAAGTTCGTCAACTACGACCTGCGGCTCGCCGTCATCGGCGACATCTCCGCGCACCTGGCGGCCAGTTCGGCGCTGCGCTCCCTGGTGCACGAGTCGAACCGCGGGGGTCACGTGTGGTTCCTGCCCGACCTCGACGCCCTGGACGCGCGGCTGGCAGCCCTCGCCTGAGCCTGGCACCCCCGACCGGCCTCAAGCCGCCGACCGGACGGCGCGGGTCGACTTCGGACGGTGGGATACGGTGACCCCGTGTTCCAGGTCTCCGGCCCGACGGCTAGTCACAAAACGATAACGCGCCACTGAAAGCCCAGTTGGCGAAGG # Right flank : CCCGCCACCAGCCTGGTGGGAACGCGGTGGCGCGGCCGGCGGGCAGGCTTCTCGACCGACCGGGCGACACCCGACGGTTCCGCTTCGCCACTCGGCCGGGCGCGCGATGGTCGCGGGCGACGGGCGGCCCGCGCCCGGCCGTGTCAGGCTGCCAGCAGTGCGCGTCGACCCCGCCAGGCGTGCGGCCGGAGGAAGGGGGAGGGCCGGTGTCCGGTCGTCGGGACCATCCGCCCGCCATCGACCGTGCCGACGCCGACCTGGCCCTGATGGGCCGCTGGCTCGTCGACGGACCGGAGAAGCAGGCCCGCGCGGCGGACGCGCTGCTGGCCGAGCGGTCCGGGTGGGGGTGGCTGGAGGGGCTGATCTCGATCAGCTGCTTCGCGGGCCTGGACGGCCGGGGGATGCTCACCTACTCGCAATGGGTGGACGAGGCGTCGTTGCGGCACTTCATCGCCGTGGAGCGCCCGTCGATGCTGCGCTTCGTCGACCGGATCGTGCAG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAGGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 23 5039836-5039135 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================= ================== 5039835 28 100.0 33 ............................ CTCGTACACGGTGAGCTCGCTGGAGCTGTAGAC 5039774 28 100.0 33 ............................ GCCGCGGCAGGAGGCATCCGCATGATCACCGTG 5039713 28 100.0 33 ............................ GTCCTGACGTGCCTCCAGGCCGACGCGGTTCTT 5039652 28 100.0 33 ............................ CGAAAGTGAGCGACATGGACCTCCCGGAGGGCT 5039591 28 100.0 33 ............................ GATCGCGGCGAGAATCCACATCCACCGGGGCAG 5039530 28 100.0 33 ............................ CAGCGCACAGCCGACGGGAGACCCCGCTGCGGC 5039469 28 96.4 33 ..................T......... GTTCTTCTTCGCGATCTCGCGCCGGGCGTGATC 5039408 28 89.3 33 ..............GA..A......... GTGCTTACGCGATTCGCGGCGGGTCTGAAAACG 5039347 28 82.1 93 ......T......G..T.......GA.. GGGCATGTGCCGATGGCGCTGCGGGCCGACGTGTCCGCCCGGTGTGAGCCCGAGCGCACCGGTCGGCAGCTCGATCGGCGCGCGGCGCAGATC 5039226 27 78.6 36 ..........T..G.C...A.-...T.. GCCGGCCTTCGACCACCAGACGATCCTGCTCGGCGA 5039163 28 78.6 0 .....T.....C.GC...........GG | C [5039143] ========== ====== ====== ====== ============================ ============================================================================================= ================== 11 28 93.2 39 GTCCGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : CGACCTCCGTGACGTCGGGAAGCAGTTCGGCCAGACGCTGCGGCCTGGCCCACCAGCGGTAGGCGGTTGCTGCGGACACGGGAACGTCCGTCGACCTGTCGATGACGGCCACCTGCTGCTCCTCTGTCGGCGGGGCCCGGCACGGGATGCGGTCGGCGTCTCGACGACACGCACGTCCTGCCTGGGCGTGATGGTGGTCCTGTAAGAGCGTGTCTGCGACACCGCTCCCTGGTGGTGATACCCGAGATCGCCTCACACTGCACCTGTGTCCACCCGAGGAGGGTGCGCCGAAGCGGGTCCCGACGCGGACGATCTCGGGCCGACGACGTCGGGTCGGCGGCGCCCGTCGGCCTGCGCCGGCCCGATCGACCCGGCGTCGCGTCGAACGTCGTCGGACCGGCGTCTCACGCTCCGGTACGGTGATCGCAGGTGCGCATTCCGCGCCCACGCCGTCAGATCACAGGACGATCACGTGCCAGTGAAGGCCCAGTTCACGAAGC # Right flank : AGCCGGACGAGGGTTCTCGGCCTGTCGGCCCGGTCTTCGCCGCGGTCGCCTCGGCTCGTCGCCCTGCTCGCCTGCCTCCCGCCCCGGCCCGCCGGACGTCTCGCCCCGCCGGGCCCCTGTCTCGTCCGGCCCCGCCCGCCGCCGCCCGTTCCCTGGTCGGGTTCCCGGCGAGGTGTACCGCGCCCGCGCGGGGGTATTCGGGGAGCTCGACAGCAGGAGGCGCGATGCTCGACGGGTTGTCCGGCTCACTGATCACGACGACAAGACCGGTGCTGCTCGAACAGGCGGCGCGGGAACATCTGAGAGTCCACAGCCCGGTCGACGGAGCGCTGGTCGGTCTGCTCCCGGTGGCCGACGAGCACGAGATCACGCAGGCCCTGCGTACCGCCAGGTCGGCGCTGTCGGGCTGGTCGCGAACCTCGGCCGCCGAGCGGGGACGCCGCCTGCGCATCGCCGCCTCGGCGGTGCGTGCCTCCGTCGACGAGCTGGCCGCGCTGCAC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.49, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 24 5321427-5321175 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 5321426 30 100.0 45 .............................. CCCAGGTAGAGGTCGAACCACTCGGCCTCGACACCGCTGTTGCGA 5321351 30 100.0 43 .............................. CCGTTTCGGGGTGGTCCCGCCGCAACCCTCTACAGTGTTGCGA 5321278 30 100.0 44 .............................. AGATCGGTCGGGCCGCGTTGGGGGACTGCCGAAAGGCGTTGCGA 5321204 30 96.7 0 .............T................ | ========== ====== ====== ====== ============================== ============================================= ================== 4 30 99.2 44 TCCTCACCGGCCCCGGAAGGCCGGTGCCAC # Left flank : TGTCTCTTCGATGATTTCCCGTGTTACGCACTCTTCCGGGGTCTCGCCAAGCTCCAGGCGTCCGCCGGGAAGCTCCCACTCCTCCCTGTCGTTGCGCAACAGGAGCACGGCGCCGTCGCGGATGACGACACCTTTGATCGAGACGGGGTACATGCCGGTCGTCGTCATCGGATCTCCACTGTGCGCGTAGTCGCCATCGCGCGGTTGACAGATCAACAGAGTGTCGCTGGACATCGTGTGAAGCCGGCGGTGAGCTGCGCGTGGAGGTGCCGCATCACATGACCAGTCAGCGCACCTCGCGTCGAGGCAACCGATGCCGGCGATGTCGCGACCTGCCTCGCGTCGGACGATGCGGTTCTCCTCACCGGCTTGCACGACCGCCGCACCGTCATCGCTGCGGTACCCCGCCCTCGGTCGCGTCGAGACAGCGACGTCGACGGCGTCACCGTGATCACCTGCCGGCCACGAGATCGATCAACTTACTCACCTTGTCGTTGCGG # Right flank : CCTGGCTGTGCAGGGACGATCCTTTCTCGTGCACCGCGATGTTATCGGACGGTGATCGACGCACCCGGTGATCGGTTCGGAGTGGTCCGGCGTGTCGCCCGACGCCTGCCTTTCCGAACCGCCTGCGGCGGATCGCGGTGCTCGTCGGGCCGGGCCGATCGGTTCGCGCGCTCGCGTGTCGGCGTCCCGCCTGCGCGCGTGGTGTCCGGCGACTCGACTCCGGCAGGCGGTGCTCGCCGTCCGGAACGGTCGGGTCGCCGGGCGGCCTGCTGTCCATCCGTGGTCCTGCTCGGGTCGTGGGGCTCCGGTGGCCGGGTTCGGCGGTCGAGTACTCGTCGAACTCAACGCGACGACCTCGGGCAGGGCGGACTCGACGTCGTGCTCTGATCGGCACACCCCGGCCCGGTACACCCGGCCCGCCGCATCCCGACACGGCCCCGTCCACCGGTCAGCCGCGCAGTCGCAGGCCTTTCGGCGTGGCGCGGAAACCGGCCGCCTGG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCACCGGCCCCGGAAGGCCGGTGCCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.60,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 25 5554407-5554148 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 5554406 36 100.0 38 .................................... CGACTTCGAGGACGAGGAGATCGAGGAGATCGCGGCTC 5554332 36 100.0 38 .................................... CGGTGTCGCCGCGAAGTCAGCCGCCCGCGACAGCAAGA 5554258 36 97.2 39 .........G.......................... TCGTCCGGGACGACGCAACAGCCCTCGTGGCCTGCCGGG 5554183 36 94.4 0 .........G........................G. | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 97.9 39 GTGGCACCGACTCTGCGGAGCCGGTGAGGATCGCAA # Left flank : CACGATCGACGTGGAACGGGAACGCGGGGAGGCGATCCGAGGGTTCGCCGAGCTGACACGGCGAGCACAGGCGAGCGGACGGCTGCGGGCCGACTTCACGCCCGCGGACCTGACGCTGGTGCTCATGGCCAACGGCGGCATCGTCGCGGACTCCGCCGAGATCCGGGAGGCCGCGTCCCGCAGGTTGGTCGCCTACCTGATCGAGGGGTTTCGCGCCGACCGAGGCGAGCCCGCCGCGCCCCTGCCGCCCGCCGCTCCGCTGCGTCTGCGGGACGTCGTCCGCTGAGATCGAGAGGGTGTCGCCTCGGCCCGCCGCGTCCCCGGCGCGAGATCGAAGCTCAGCTGAATCGGACGTGCCGGGGGTTCCTGGCGGGCCGGGTGCTTCGGGACCGGAGGCGTCGGCCGACACGCCGGGTCGGTCCCAAGCGATCTGCGGGCGTGTCGGTCACAAGCCGATAACCTGAGCCCGTTCGAACAGACGACACCCCTGGCAGGCCAGG # Right flank : CGGCGGCCGAACCCCGCGGAGATCTCCGGCAGGCCGGAGGCGGCGGATGCCGCCGAGCGGGCATTCCCCGACGGGGTGACGGCGAAGGCCGCGCAGTATCCACCGATTCGAGATGCCGATCACATCGTCGGGAGCAGAAGACCGTGCCTTCTTCTCCTGAGAGAAAAGTGGTGCGTTCGACCGTTGGGAGAGTCCTCCCAGCGGGCGGGAGGAAGCCGGTACGGTCGCCGGCAGCGAGAATTCGCTGATCGGAAGGGAGCCCGTATGTTCCGGAAGGTCCTGGTCGCCAATCGAGGCGAGATCGCGATTCGGGCGTTTCGCGCCGCTTACGAGCTCGGGGCGGGAACAGTCGCCGTCTTTCCGCATGAGGACCGGAACTCGGTGCATCGGCTCAAGGCCGACGAGGCCTACGAGATCGGCGAGCCCGGGCATCCCGTTCGCGCCTACCTGTCGGTGGCCGAGATCGTCGCCGCCGCCCGCCGCGCGGGCGCCGACGCCGT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGACTCTGCGGAGCCGGTGAGGATCGCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.90,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 26 5575692-5575180 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5575691 28 100.0 33 ............................ TCCCTCCCGGAGCTGCTGGACGCGCTCGTGTCC 5575630 28 100.0 33 ............................ GACGAAGGAGGTCACCTGATGTCCCTGCCCACC 5575569 28 100.0 33 ............................ GCACTCGCACGGGCGATCGGCGCCGAGCTACGG 5575508 28 100.0 33 ............................ CCGCCAGCCGGCCGCCCTGCTCGGACATGATCG 5575447 28 100.0 33 ............................ CAGCGCCTCGACGACGACCAGGTCAGCGGGCAG 5575386 28 100.0 33 ............................ GCAGATTGGGACCAGGCGCTCGACGAGTGGGCG 5575325 28 100.0 33 ............................ TGGACACACACAACAATGGGCCGCCCACGGGGT 5575264 28 100.0 31 ............................ CGACGAGCGGCGCCCGCCTGAACCCGGAGAC 5575205 26 82.1 0 ...............-....CC-....T | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 33 ATCGGCCCCGCACGCGCGGGGATGGCTC # Left flank : GCGCGATGTCCGACTCCTGCCAGGTCAGGCCCGCCGCCCGCACCGCCCGTGCTCCCTCGGGCCACAGCCGCTGATGAGAGGGCGTGGCCTTCCCGCAGTCGTGGATTCCGCACAACCAGGCGAAGAGCCGCCTGCCGCGCCCCGGACCGCCCGCCACCTCGTCGAGCAGCGCCCGCGTGGACGGCGCCAGGAAGTGATCCCAGATCAGCTCCCCCACCGCCGCCGTGTCCAGCAGATGCGCGATCAGCAGGTTCGTCCTGCCGCCCGCCTTCTCCTTCGACTTTCCCCACAACGTCCCCAGCCACCGTGCCATTCGCGGGTCGACGTCGTCGTCGAGCTCCATCACCCCGTCCCCGTTCTCCTCCCCGAAGCGGAGAGTAGTGATCGGCCCTGACAAGATCGCCCGCAGTGATCGGCGAAGCGGCGAGACGGCAGTATGTGACCTGAATCACTTGGTAATTCGGTGGGGGTCGCCGTAGTAAAGTCCCAGGTCACGAAGT # Right flank : CCTCGCGGGTCGATCGGGGTGGCGATCCGCGCCGGGGCGCCTCCGTACGAGACGGGAGGGCGGGCGACGGGCGGCCGCGGAGCGATTCCCACGCCGCGGCCGCGGCACTGGAGCATCTGGTCGCCGGCCTCAGCCGGTGCGTCTGCGGAGGAGCCAGACGGTGCCGCCGACACAGAACGTCCCCAGAACGAGCAGGACGCCTGCCTCGATGGACTGCAGGAGCCAGTAGCGGTCCGCCGGGTGGTAGCTGACGAATTCGTGCAGACCGTCGGGTAGTGACCATGGTTCGGCGTCCGGGTCGGCGTTCCGATGTTCCCAGGTCAGCTGATAACCGTGCTGATCGGGAATCCGATGACCGGCGTCGTCCTCGAAACGGGTGCCGAGGTAGAACGCCGACGGATCGACGGGCGTCACCGAGTATCCGTCGCTGTCCCCTTCGTATTCGAAGTACTCGGCCGAGGGCATCGTCTCGGGAGCGGTGTACACCGTGAGGGCGAACG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCACGCGCGGGGATGGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 27 5587373-5586673 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5587372 29 96.6 32 ............................G GCGGCGTGGACGGCGTTCGCAACGGCGCACGG 5587311 29 100.0 32 ............................. GCCGCCGTCGCCACCCTGCCCCCGCGCCGCCC 5587250 29 100.0 32 ............................. CCGATCCAGGTCCGCCCGCAGCTGCTGGAGGG 5587189 29 100.0 32 ............................. ACGCCGAGGTTCCGGTCCCACGCCGTGATCGC 5587128 29 96.6 32 ............................G GCGGCGACGTCTCCGGGCGCGGTGCGTTCACG 5587067 29 100.0 32 ............................. TGCGCGCGGCCATCGACGACGCCGAGGCCGCC 5587006 29 100.0 32 ............................. GGACTGGCCCGCGGCGCCACGACACCCCGCCG 5586945 29 96.6 32 ............................G ACGTCCTCTTCGACATCCCAGATGACGCGGCC 5586884 29 96.6 32 ..........T.................. GTCCCCCGGTCCCTCACGAACGCGGCGACGTC 5586823 29 100.0 32 ............................. GCGGTCGTCGAGCGCGTCCACCGCTGTACCGA 5586762 29 96.6 32 ................T............ GCGCGGCCAGCAGCGGCGAGAGCTGTACTGCG 5586701 29 86.2 0 ..................A..G...TG.. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.4 32 ATCGGCCCCGCGCACGCGGGGATGGCTCC # Left flank : GAGCGCGGTGGTCGGTCGCGAGATCGAGTGCGGCGTACTGGAGTTCCCGGACGGCCGCGTCGAGGCCTCGCTGCCCTCGGAGATCCGGGTCGTCGACGGCGCGGTCGACTGGTACGACTTCGACGCCAAGTACCTCGACGAGTTCTGCGAGATCGACATCCCGGCGAAGCTCGACGACGACGTCACCGAGCGGCTGCGTGCCCAGGCGATCACCGCCTTCGAGGCACTCGACTGCCAGGGACTGGCGAGGGTGGACTTCTTCGTCACCGAGGCGGGTGAGTTGATCGTCAACGAGGTCAACACCATGCCCGGCTTCACCCCGATCTCGATGTACCCGAAGATGTGGGCGGTGACCGGCACGGACTACCCGTCCCTGCTCGACACGCTCGTCCAGACGGCGCTGGCCAGGGGTACCGGGCTGAGATGAAGCGCTCTGTAGTGACCTGGATCACGTGGTCATTCTGAGCCTTGGGGCGAGATGAACCCGCAGGTCAACAAGT # Right flank : AGCGCGAAATAGCGCGGTAGAACTAGAGTGCCGATCGGTCGCGTGCCTGTTCGTAGGTCCGACGCGTGGGAGAATGCGGGATTAATTCATAAACTTGGAAGGATCTCCCACAGGGATATGGCGCTCGGCTGATGTCGTTCGGATTGTCTTTTATCTTCAAGTGAGTTGATGTGCGTTCTGCCTCCGTGCTGCATTGGTCTGTCGCCGCATCGCTCGATCGGGTGGTGCTGTGCGCGATCATGCCAAAACCGAACGAATTCGTCGGTATCGTCGATCTTATGAACCCGTTTGCGACTGTGCCGCAGCGCGCGGCGCTACTGCTGGACTCCATCGGCGACATCTGCTCTTCCTGCGCGAGTGCGGCCGAGGTCATCCGCTCCTCGGGTAGCGCTTCGGTGATGCGGACGTGCGCGCAGGCCTGCCGTCGTCTCGCGGAGTTGATAAGGCGGGGGAGACCTGGCGATGTGGTCACCCCCGCTACAGTGAACTGACCGTCCTGG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGCACGCGGGGATGGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 28 5589845-5588830 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================================================== ================== 5589844 27 75.0 32 ....G.CG.....CG....-C....... GGCTTCCCACCTCGCCACCCCATGCGTAGTCG 5589785 28 100.0 33 ............................ GCGGCGACGGGCTCGGGACATGCGGATCACAAG 5589724 28 100.0 33 ............................ CCCAGGTACTGGCCGAAGTCCGTATCCCTGGCC 5589663 28 100.0 33 ............................ GTCACGGCCGCACCCATGTCAGCGAGAAGCCGG 5589602 28 100.0 33 ............................ ACCGACCACCGGCGATCGCGCCCGGCTGGTTGG 5589541 28 100.0 33 ............................ AGCTGGTGCTGATGCCCGCCTGCCCATGGCTCA 5589480 28 100.0 33 ............................ GTCGACCTTGCCGCCGAGGAGGGACAGCATGTC 5589419 28 96.4 33 .......................A.... CCGTGCTACTCGGCACACTGGCGCCATCCATGC 5589358 28 96.4 33 .......................A.... CTCCATCTGCAGGGGCATGACTCACTCCCTCAG 5589297 28 96.4 33 .......................A.... ATAGTGTCCGCGATGGACGACGCGTAGGGGTAG 5589236 28 96.4 33 .......................A.... CTGACCAGCACGACCACGACTGACCAGGAGGAA 5589175 28 100.0 33 ............................ CGGGATCAACAGCCGCACGTCGTCGGCGGTGAA 5589114 28 100.0 230 ............................ ACTTGTTGACCAGCGGGTTTATTCGTGGCCGAGGGCCGATTTCTACCACGTGATCCACGTCACCATCTCCTGGAGCTGTGGGCGTCGGTTCGGAACCTGTCGTGCTGAGCGTATCGAACGGTGTAGTCGATGATGTTCGTGCTGGGAACGCCCGTGCCGGGCCGGTTGAGCCACGAACGGTCGTCCGATCGTCCGGCCGGGGCGGTCCGCTGCGTGGGCGTCCAGCCGGT 5588856 27 67.9 0 .C..G.G.....-...C....T.A..CG | ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================================================== ================== 14 28 94.9 48 GAGCTATCCCCGCGCGTGCGGGGCCGAC # Left flank : GCGGGAGCGGGTCCACCCGCCGCAGGCCAGCGGGTCTTCGTCGAGCTGGCTCGCCACGGAGACCTCGGGAGACACCTGCGCCGCATGCGCCGCGAGCTCGCGGCGCGGCGACTCCGGCTGGTGCAGGCGCTCGGTGAGAAGGGCATCGAGGTTCTCGGAGACGAGGCGGGCGCGCACGTGGTGATCCCACTGGCCTCCGCGGCGGCGGAGCAGCGGGTGGCGGCGAAGGCGGCGGCCGCAGGTGTGCTCATCGACGGCCTGGCTCGCCACTATCAGCGCACGCCGAGGCTCTTCGGCGTGCCGCTGGGCTACGCGGCCTGCACGCCTGCCGAGTTCGACGCGGCACTGCCGGAGATCGTCCAGTTGTTCGCGGACGAGGCGGGCAGGTCTGCCGACTTGGACGCCGAGTGAGCGGATCGGGGCGCCGGAGAAGCCTGATGGCACGTCACCGACTCGCTGGGGCGACTGTATCCGGTCGTGACAGGACGCTCGGCCGTCAC # Right flank : GCGCCGGTCGGTGGGTGCGTCTTCGGGGACGGCCCACCGGAACGGGTGACCGCTTTTCGTTCAGGTGGGCCGCCGCACACGCTGTGTTCGAGAGCCTCGTCGATCGGGGGGACGCGCCCACCCGTGCTTCTCGCTGTCGGACACGACGGATCGGCGGGTGACGGCGACCGGAATGTCCGCCAGCGTGCCGAATTCGTCACATCGAGTGTGTTGGGGCGGCGGAAACCTGGGGACGCCTGCCGCTGCGCCGATCGAGGGAGGATTCGTGCCGGTAGGGTCACGCAGCATGACGGAGCGGAGAACACGCGTCGCGGTTGTCTTCGGCGGGCGGAGCTCGGAACACGCCATCTCGTGTTCGTCGGCCGCCAGCGTGCTGGCTCACCTCGACCCGCAGCGCTACGAGGTCGTTCCGGTGGGCATCAGCCAGGAAGGCCGTTGGGTCGTCGGCACCTCCGACGTCAGCGAGCTGGAGATCCGTGACCGTGTTCTGCCCACGGTGG # Questionable array : NO Score: 4.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-1.51, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGCTATCCCCGCGCGTGCGGGGCCGAC # Alternate repeat : GAGCTATCCCCGCGCGTGCGGGGACGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 29 5592407-5593101 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================== ================== 5592407 29 100.0 32 ............................. CGGTTGTCACGCCGCCGAGTCCACTGGGCCAT 5592468 29 100.0 31 ............................. GTTCGGTTTCGAACGTGGCGTTGACGGTCGG 5592528 29 100.0 32 ............................. GCCTGGTCGACGGTCCGACCGATCTCGCCGAG 5592589 29 96.6 32 ............................G GCGCTGCTGTCCGAGATCACCGACCGGGCGGA 5592650 29 100.0 32 ............................. CATCACCTCGTCCTCGTCGAGCACGGGCGGGT 5592711 29 93.1 32 ...........G................G CTGCGTGACACCGAGACCGTCGAGCGTGGGGC 5592772 29 93.1 154 ...........G................G ACCGCCGCCGCGTTGGACCGGGTGCTCGCCGTGGCAGCCCCGCGCGTATGCGGACGATTCTCAGGCGACGCTGTTCGAAAGTCGTGGAATCGAATCGGCCCCCGCGCGGGGTGGGCTCGTGGCGCACTCGGCAGGTCGGGACGCCACCGTGGAC 5592955 28 75.9 31 CA...-.T.........A.......T.T. CAAGGCACCCTGGCTGTTCCCGCGAATCCCG 5593014 29 72.4 32 .C......G..G..G....ACC..A.... TACCCCGATGAATCGAACTACTGCCGGCCATG 5593075 27 79.3 0 .....-.....G...A.-.....A....G | ========== ====== ====== ====== ============================= ========================================================================================================================================================== ================== 10 29 91.0 45 GTCGGCCCCGCACACGCGGGGATGGCTCC # Left flank : CGGCGGCGCCCGACTGCCCACCGAACGGGAGATGGCCGCGACGCTGGTGCTCGCGATGGACCTCGGCGAGGCATCGGTGAAGGTACGCACCGGCCCGCCCGGCGACGATGAGGACGACGTGGCGGCCGACGAACACTGGGCCGGGGTGCTGCCGCTGAAGCAGACCTGGGGCAGCCCGGAGCCGTGCCCGCTGCTTCCCGCCGGGCGACCGATCCCTGAGCGCGTCAGCGGGCGCTGATCCGCCCATGAGCGTCGGACGTCGAGTATGCCCAGAGGAACGATCGATCCCGTCCGACGTCACCGAACCGGCTCCGCCGAGCCGTGCGGGGAGGCCGTCACGCGCACGGCCGTCCATGGAAGTCGCGGCACATACCCGCCCGGCCGACGAGCCGAGCACGGACCGCACAAGGCACCCGATCACGGACGAGGCGCCGACATGTAACGTGGATCACGTGGTAGTACAGGCTTGCCGGCCGCGATGAATCCGCTGGTCAACAAGT # Right flank : GCACACTGGACGCCAGGCAGATCCCCACTGTGCATCGGCCCGCGCACGCATGGCGGCTCGACAAGGCAGCGTGGTCGACGGCGTCGACTGAGCGCAGGCCTTGGCGCACGGGAGGCGCTCTGGCAGGGGGCAAGCACCGTCGAGGCGGTCCCGCGATCAACACCGCAGCCGGAGCGATCACGGCGTCGCTCACCGTTTCCGCCTGGGGCATCTCGACCGCGCCCGCGTCGGGCCCCGGGCGGGTTCGGACCGACCCGTCCGCAGTGGCCTCCGGCACCGGGGGCGTGCTCAGTGCGTCCGGCCCGCATCCGTCCGGGAGAAGGGCCTCCGCACGCGAAGTCGCCGGTTACCAGCGGCGGCGCCCCGTGGGACGCAGGCCCTCGACGGCGTCGAACTCGTACTCGTTCATCTCGCGCCGTTCCCGACGGTAGACGTGCACGCTGACCGCCGGGTCCGGGCCCTCGTTGACGACCTCGTGCACGTAGTCCGGTCCGAAGACG # Questionable array : NO Score: 4.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-1.32, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATGGCTCC # Alternate repeat : GTCGGCCCCGCGCACGCGGGGATGGCTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 30 5858030-5858485 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022521.1 Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5858030 28 100.0 33 ............................ TCAGCCGCGACCGGTGCAGGTCCAGCACGGCGG 5858091 28 100.0 33 ............................ CCGTCGGGCTCGACGACCGGTTCAGCAACGGCG 5858152 28 100.0 33 ............................ CTCGCGCACCTCCACCGGCACGTCGTCGGGCAG 5858213 28 100.0 33 ............................ CACGATCTACTCGGACTTGGTCTCGACATCGCC 5858274 28 100.0 33 ............................ GCGACATCGTGTCGACACCGGTCGTCACCAGCA 5858335 28 100.0 34 ............................ ACCGCCCGTCGAGCTTGGCCTCTCAATGGACACA 5858397 28 100.0 33 ............................ TCCCGAGTCCAGGTAGTTGACCACGGATTTTGC 5858458 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 8 28 100.0 33 ATCGGCCCCGCGCGTGCGGGGATGGCTC # Left flank : ATATTCCGCTGTGACGGCGGGACGTGGGGCCGGGCTCGGGCTCGGGGCGGGTCCTGGGCGTGTACCGGGTCCCGGGCCTCGGCTCGACCTCGGTGCCCGGCGCACGTCGAGACTCGACGACGCGGCGGTGGGCGAAGCCTGCCCGGCAGGACTGGAGGACGATCATGAGTGATGATGCCGAGGGTCGACAGGGCCGACCGGTGCTGCGGATCATTCGAGGCGAGCCCGACGACGTCGAACTCGCCGCGCTGACCGCCGTCCTGGCGTCGCTTCCCGCAGCCGCCCCGCCGGTGACAGACCCGGAACCCGCACGCTCCGGCTGGGCCGACCGAGCCGCTTCACTGCGCCGCCCGCTCTTCCCCGGCCCCGATGCCTGGCGCCGATCGGGGCTCTGACGGCATGGGCGGGGTCGCAGCGGCGGACCATCCGACCGGTATCGTGACGCGTATCACGTGGTAGAAGACCGGCCTGGCGCCGAATAAAGCCGCAGGTCAAGAAGT # Right flank : CGCGGTGCGGGGATGGCTCCTGCACGCTCCACGGCCGATGGCTCGTCGAGACATCGACCCCGCGCGGGGGTGGCTCGCCGTCGCGGCCTCGCGGCGGACCCTGCCGCGCCGGATTCTTAGTCGTCACACGGCGATGATCTTCGACCTCCGGCCCTCGGCACACAGGATCGCCGCGACCGACACCCACTTCGACCACACGTCGCAGTACACGGGGAGTTCCGCACGGTTGATCCAGGCGAGTGAGCAAACCGACGGCCGCCAGCTCGACCTTCGCTGGCGGCTTCGACGATGCGTCGCGGCGCCCGGGCTGGGCTCGCAACCCACGGACGTTGTCGGGGCTCAGCGGGACGATGGAGCCGAGGAGCAGCGCATCACGGGCCTCGCGGAAGAACACCAGCTCGGCCGGGTGGTCGCGGGTGCGCCGAAGGCTCAGCCAGCCGGTCGACGTCAACGAGCAGATCGCTCGGCCCCCTGCGTTCGAGTGCAGCCGTGGTCCTGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGCGTGCGGGGATGGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //