Array 1 7363-7030 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFFJ01000247.1 Streptomyces triticirhizae strain NEAU-YY642 Scaffold247, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7362 29 100.0 33 ............................. CGATCCACGGCGGTGGCTTCCTCAGGGGCCAGG 7300 29 96.6 32 ....C........................ GCCTCATCGAATGTCATCCGCAGACCGTAGCG 7239 29 100.0 32 ............................. ACCGAGCGCGTCACCGCCCGCCATCGAGATGG 7178 29 100.0 32 ............................. ACGGCCGATTGGGTCGGCCGCGCCGGCGATGT 7117 29 100.0 30 ............................. GGCATGACCGACCTGCTGCACCCCCTGGGG 7058 29 93.1 0 .......................AC.... | ========== ====== ====== ====== ============================= ================================= ================== 6 29 98.3 32 CTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : GCGCCGGCGACGGGGCGGGCGACGGCCCGCGCCCGGCCACGGCTACGCTGACGCCGGGGCGGCGGCGCGGCGCCGCCTCGGAAGGTGGGGACGTCGGTGCGGTGAAACGTCTTGGAGCAGCGACCACTCGGCCCTGTCGGGCCCCAAAGGTAAAGTTGAGTAAAATCCGCCACCACCCCCGATAAACCCGCAGCTCACGACC # Right flank : AGGTCGTGTTCATCGCGCACCAGCGGACATGGGGGAAGTCCCGCCGGGGCTTTCGCCTTTCGAACTCAAGTGACCCCCGTGGAATCTGTCTCCACAGGGGCTACTTGTTGTTCGGTGATCAGCTCTTGACGTGCTTCACAAACATGGTCCAGGCGGGGCCCGGCACGTTCAGGGTCGGGCCGTCGGTGACCTTCGAGTCACGGACAGGCACGACTCCCGGGACGCCGTCTCGGACTTCGAGGCATTCCCCGCCCTGGTTGCTGCTGTAGCTGCTCCTGCGCCACGGGGTGTCAGACGTCTTCATTCGGCAGTTCCTTCGCGATTTTCTCGATGAGCCGGATGGACTTGGTTGGGCTCAACGCTTCCGCCCTAAGCCTCTCGAAAGCCGACCGGCAGAACTCTACCTGGTCATCGCTGGTGGCCATCTGGCCACCGAGCGCTGTATCCGTGTAAGCCACGGTGCGTTGCTGGGGCATCTCCAACAGGATGAAGGGTTCCGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28866-29556 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFFJ01000009.1 Streptomyces triticirhizae strain NEAU-YY642 Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 28866 30 100.0 37 .............................. TTGTCCCGGTCGCGCCGGCCGGGGTGGAGCTGGACCG 28933 30 100.0 37 .............................. TCGACGAGTCCTTCGCGGACGAGGTCGGCGGCCTGGA 29000 30 100.0 36 .............................. GCCGTGGTGCTGCCCTTGACGCCGAACACGAGGGCG 29066 30 100.0 37 .............................. ATCGCGTCGCCGACCGCCCCGAGAATGCGGCCCACGT 29133 30 100.0 36 .............................. GCGCGGGGGTGCACTACGTCTCCTACGGCACCCCGG 29199 30 100.0 36 .............................. ATGACGGAACAGGTAGCGTCGGCCATGGCCGGACTC 29265 30 100.0 35 .............................. TCGCCTACGCCACGCCCCAGGCAGCCGAAGAGGCG 29330 30 100.0 34 .............................. GGGCGGGGAAAAGTGATCCCCGAGGATCACCCTC 29394 30 100.0 36 .............................. GTGTCGTAGTACTGGTGGCGCTGCTCGGCGCGGCGG 29460 30 100.0 37 .............................. CGGTCGCGCTCGATCTCTTCGCCGGTGACGGCCTCGG 29527 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 99.7 36 GTCCTCATCGCCCCTACGAGGGGTAGCAAC # Left flank : CACCCTCGGCCGCCCCGTCGCCTACGACGAACTCATCTACCTCGACGCACTGGCCCTCACCCGCCACTGCCTGGAGGGCACCCCCTACAAGCCGTTCCGCATCTGGTGGTGACGCCCGGATGCACGTCATCGTCGTCTATGACACGGCCGCGAAACGCAACCCCAGAATCCTGCGCACCTGCCGCAAGTACCTGCACCATGTCCAACGAAGCGTCTTCGAAGGACAACTCACGCCGGCCCAACTCCGCATGTTCCAGGCGGCGGTTGAAGACGCTCTCGACCTGAGCTACGACAACGTCCTCGTCTACACCTTCCCACCCGGGACGAGTCCCCAACGCCTCGAATGGGGTGCCACGAAACCCGCCCCGACGGATGTCCTGTGACGGCGGCAGACAAATTTCAGCAACACCCCGGCCTCAGCCGCACAACCCCCGGAGCGCTGAAAAACTGCGCCCCCACGGGAGCACGGAACCCGTGCTGACCTGCATCTTCACGATGCG # Right flank : CCCGGCATGGCTGAGGACATCGCGGCGACGGGCGAGGTCCTCATCGCCCCTACGAGTCCTTGGTGATCTGGATCAGCACGTCCTCGCTCACCTCGAACGCCCCAACCCCCGCACCTGCGAGCATGCGATCGCCGCCGCTCGGGAGGAGGCCCTGTTGGGCGACCGCAACTGGAAGCGGTGGTGCCTGGCCTTCGTCGCCGAAGCCTACGGCTGGGGCGCCTCCGGCGAACCCACGGCCAACGCCGCCTGGCGCCGGCTTCACGCAGCCGGTCAGACCCACCCTCACGACCCCAACGTCCCAGCCGGTGCTCTCCTCTTCTACGCCACCGGTGACGACGCCGGTCACGTCGCACTCCATCTCGGCGACGACCAGGTCGCGACGAACGACATCGCGGCCCCCGGCCGCATCGACATCGTTCCCCTCGACCAGCTGACCCATGGCCCCTGGCACCTCACCTACCGAGGCTGGGCCCCACCGAGCTTCCCCCACGGGGTCGAGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 10348-10498 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFFJ01000090.1 Streptomyces triticirhizae strain NEAU-YY642 Scaffold90, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10348 29 100.0 32 ............................. GAGCTGCGGGAAGCCATCAGCCAGGACCCCCT 10409 29 100.0 32 ............................. GACCGGCTGGGGCACGCGGCCGGTGACGAGCT 10470 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CACGGAGCTGTCCCCCTGGGCGGTGGCCGGCGAGGACTACCAGGCCCAGTTCGTGATCGGACTGCTGGTGCCGGGTGTCTGGCACGCGTGGGAAGCGGGTGACGAACGGGCGGGCACGCACGCGACGTTGTGGGTGCGGGCGGAGAACGGCCCATCCGCCGCCCTGGTGGAGGTAGCGGCCGGAACCGGTCACACGACGGTTCGCCAGTCCGGCCCCCGCCGCCTGTGGGACGAGATCACCGCCGCCTACGGCTGGTGGCACGCCGCCGGCTCCCCGGACATGCCCCGCTTCGGTTTCACCTGCGGCGAGGACGGCACCACGACGGCCTGGCTCGACACCCCGGAACGGCAGCTCCCGGAGCCGACAACTCGCTAGTCTGGAACGACAACTTCGGGTGCCCCAAGGGCTGTTGCTTGGAGAGGGTTTTGCCGCTATGTCGCGTTCTCTGAAAGTAAGTAAAAACTGCCTCCCCCGCCGATAAAAGCCCAGGTCATTTGCT # Right flank : CCGCCCACGGCCCCCAGTGGTTGACCTCGCCGAACCGTTCCCTGCTCGCGCGCGGGGCATAGAGACGCAGGTCAGCCCGCTCGCTGAGCAGGCCTTCCAGGTCTCGGCAAGAGAGAACCACCCCCACGCCAGGACTGGGCAGACCGGTGTGGGGGTGGTCGCCACCCGTGTCGACCCGTGCAGAGACGGGGACGTCCGGACGCGGGTGGCTGTCTGTGAGGGGCGGGTTCAACGGGGCGGGTAGGTAGGCCCCACGACGGTGAACTTGAAGCCCACGTGGATCATCTCGCCGCGCGGCGTTCCACGCCCGTCGTGGCCGTGGATCACCATCGTCCCCGTGTGCTGCGTCGGTTGATCTCGCGGATCAGGGGGGAGAGGGCCTGGGCGAGGGACAGGGGTGACACGTCGTCGAGGGGGGCGGTCCAGTCGGGGCCGCCGGCGCGGGGGCGCAGGGTGGCCGAGGTTCCCGTCACGGCCACGATCCTGCCGATGCGGTGGCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.30,-14.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //