Array 1 3443539-3443331 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML178805.1 Pseudomonas sp. HS-2 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3443538 28 100.0 32 ............................ TGCTCGGCCTTCTTGCCGGTGATCTGCTCCAG 3443478 28 96.4 32 ...........A................ TGTCACGGTGACAGGTCACGCACAGGACACGG 3443418 28 100.0 32 ............................ TGGCAGATCTCGGCCTCGCGGTTCTTCGGTAC 3443358 28 75.0 0 .....................AATTTGC | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.8 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CGCCCAACCCGGCCATCAACAGATGGCTGAGCCAATAGGTGGCAACATAGCGCAGCCAGAACGTCAGGTCGGTCGCCACATCGTTCATCAGCCAGCCGACCAGCGATATCACCATGCTGACAACGCTCACCGCCAGGACTACGCCCACCAGATGCAGTGGCAGTACCGGCAATTGTCGTGAAGCCGATGTCGGCACGAGCGGTTCGGGCGCAAAGGGATTGGGTTCGGTCATTGGGCGATCCTTGTCGTAGATGTAGTCCCTGAGGGTTGCTGGGAGAATAACCGTCATCACGAGGGAGGAAAGTGCGAAAGCCTGTTTGCGTGCAGCTGTCGATGTAAGTGATCGGCTTTACATACCCTGATCGGCATACCCTTTTTTCCAGAACCCATTTCCATACCTTTAAAATCAAGCACTTGGTTGAGGATGGGAAAAAAGGGTGAAACCGCCGCGGCTCGGGCTTTGGCCTTGAGAAAAAATCACTTGCCCTCTATCTTTCCTA # Right flank : GGGCTGTTCGCTTCGCTCCTGAGCCCGCCCTACGCAAAAATCCGTGTCCGGAACCAAGCAGCCCGTCTAAGCGGAATCGCAGATACGACTCGCTGCCGCACGGACTTTCAGGCGTCCAAACTACGAAACATCACATGGCAATCCACCAGGCCATACCGGGCGTGGCGGTAGGCCTTGGGCAAGGTGCCAACAATCGCGAAACCGTGTTTCTGCCATAGCGCCACGGCCACCGTATTGGTTGCCACCACACTATTGAATTGCATGGCGCTGAACCCCAGCTCGCGCGCCACCTCCAGTGAGTGAGCGCAGAGCCGGCTGGCGACGCCGCGGCCACGGGCAGCCGGGGCGGTCATATAGCCGCAGTTGCACACGTGATCGCCCGGGCCAGCGGCGTTGGCCTTGATGTAGTAGGTGCCGAGAATCTGCCCGCCCTGCTCGGCAACGAAGGTGGCGCGCGGCAGTTCGACCCAGGTTTTCCAGGCCGTTTCACGATCCATGTT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 35725-37032 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML178813.1 Pseudomonas sp. HS-2 Scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 35725 29 96.6 31 ............................A GTTGGCCGGCTCTCATGTCAAGGCTGCTCGC 35785 29 100.0 32 ............................. CAAGATAGAACGGTTGCGGTGGAGGAAAATAG 35846 29 100.0 32 ............................. GTAAATAGAAAGTTGCTCTCGGTTAAGGGGCT 35907 29 100.0 32 ............................. GTGTTCCTGTGATCCAAGGCGCTCGGCAAATT 35968 29 100.0 32 ............................. ATGAAATGGGGGGCAAACCCAGCCTCTGAGCT 36029 29 96.6 32 .........................A... TCTGGCAGGTCGTCCCAGTCGTCTCTGCGTTG 36090 29 100.0 32 ............................. ATGCTGTCCAACGACTACGGCAGCGTGTTTAC 36151 29 96.6 93 .......................A..... CTTATATATCCAGGGAGAAAATCAGGGTTCTGGTGTTGTCCACCTGCGTGGAGGTATTCGGTAGCTGCGCCCGTCATCGCCGTTGATGAACCC 36273 28 75.9 32 ..G..C......-C..TA.....A..... TCCTGTAGCGCACGTTGCGAAACCGCAGCAAC 36333 29 79.3 32 .....C..T...CAA..........A... TATTTTGGGGATTTGAAGGGGTATTGACGGTT 36394 29 100.0 32 ............................. GCTAATCTTGAGGCGTTGCTGGTAGTGCTGCC 36455 29 100.0 32 ............................. GGCTGTGGGGGTGAGAAATGAGCAAGCGCGAA 36516 29 100.0 32 ............................. CTGACCTCGTTATGCCGATTGGGTTATGCACT 36577 29 100.0 32 ............................. CCAAAACAGCGGTCTCGATATGAACCTCGGGT 36638 29 96.6 32 .........................A... GTGTCGGTGATCGGTCGGGAGGATGACGGCGC 36699 29 96.6 32 .........................A... GTGGTCGGGATCGCACGGTGCCTATTGATACG 36760 29 100.0 32 ............................. GATTCTGACGAACGTCATATGAGTCAGCCGAT 36821 29 82.8 32 .GG..C.....A..T.............. AATCCACCATGCCGTGCAGACGATGAGCGCTA 36882 29 96.6 32 .........................A... AACGTTGAGGGTGGAGAGCTGGTTGATGGTCA 36943 29 100.0 32 ............................. ATGCTGTCCAACGACTACGGCAGCGTGTTTAC 37004 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================================================= ================== 21 29 96.1 35 GTATTTCCCGCGTGCGCGGGGGTGAGCGG # Left flank : GGGTGCTGCATCGCAAAACTGGATGCAGACAAGCCGGATCAACACTGCCGAAGCAGCACGGCACCGTAGCGAAGGATTCTTGCTATTGCGGGCAGCGAAACCCAACCCAGCTGGAGGGCCATTCAAGAACTCGCTGTACCACTACCCGTTGGTCTGGGCCACGCTCACTGCATATTGCGTTGGCGATCAGGCCAGGATTGCTGACCTTCTTTCTCAATGTCGGCAGATCGGAGGTCGGCGCGGCGTAGGATGCGGTCGGGTAGCCGGATTCTCGGTGGAAGTCGTTCCAGAAGTCGAATGTACCTGGGCCTTGCGGGCAATGCCGGATGACAGCGAACAAAGCATCCTCTGCGGAGAGTATGCACTCGCAATGTCGGCTCTCCAGTGCCCATATTGGGATCGCAGTCTGCACAAGCCTGCGCTTGTGCCCACCAGTTTGCCTTAACCTGGCAAGCTACAAGATGTAGTGTTCGCACTATGCGGAAGATCAATATCTATGT # Right flank : GAGCCCCTTCTTCGCCAAGAAACTCGCGACCTGCGGATTCCACGCTGACTCGGACACCCATTCCACGCGCATCCGGACAGTGATTCCACG # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCGTGCGCGGGGGTGAGCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //