Array 1 497580-497814 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040413.1 Dolosigranulum pigrum strain KPL3246 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 497580 36 100.0 30 .................................... AAATTTGTAGATGAGATTTTAACGAACGGT 497646 36 100.0 31 .................................... GAGCGATGTGATGAGTGTGGACATCAGCTAG 497713 36 100.0 30 .................................... ACCAGCGTCTTTTGCTGATACCCACGGGGA 497779 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 100.0 31 GTTTTTGTACTCTCAATAATTTCCTATCACTAAAAC # Left flank : AAGTGATTTGGCTTGTCATCAGATATCCAGAAACTTATTTGGAGATAAATGATTATTTATCTTTTATTGAAAAAGTAAGAGTAATTGCTCAGGAAACAAAATTACTAAAAATGATAGTAATCCATTATAAACAATTAGATCCAAATATATACTCAGATGAGTTTATTGATAAGACAATTATCGCAACAAATCGATTTGAGCAATTACCTGAGATAGAGTATTTTAGAGATAATGTTCAAAAGTATTACCCAGATGAAATGACAGATACCGATAATATACTTGCCCAACGCTTTTATAGAATATCGCATCTCATTGGTGAGACAGAAATTTATAAAAATTCTACTATTTTCACAAAAGATATGGTATTATTAAAGGTGTTAGGGGACATATTAGAAATGCCGGTTACATTTGAGACGTCAGATGAAACGCTAAGTGCGTTAGAAACAGCATTTCTACTAGAGTAATATCAATCTCGAAAAAAATCATTTGGTTAATTTGAG # Right flank : CTTTTCTACCTCTAGCATCCACTCCTCGATAGTTTCCAAATTCGCTCCGATCAATTTCCGCCTTATGGTAGCTTGTTTTTAGTTGGACGGTGATTTCTTTTTCCGGTAAAATAAAGTTACCTTAAAAGCTTAGAGGAGTTATGATATGTCAGTTATGACCAATGAGAGTTTATATGAGATTAAGACGGTTTCGGAGCCGGTTGTTCATCAGGATCAGGTGTTTTTTGTTGAGACGTTGGTGGATGAAGAAGAGAATAATTATCAGAAAACAATTTACAGTGTGAATCAGAAGACGGGGGAGAGGGTGCATTGGGGTGATGGTGGTCAGAGCAATACATCGCTGGCGCTGTCGCCGAATGCCAAGTGGTTGTCTTATCTGTCTACTAATACGGACAATAATAAGCCGCAATTGTTTATTATTCCGCTGTCAGGGGGCTCGGCGGTCCAATTGACGGAAGAAGAACAAGGGGTGAGCACGTATAAGTGGACGCAGAACTCAG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCCTATCACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 690647-691101 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040413.1 Dolosigranulum pigrum strain KPL3246 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 690647 28 100.0 33 ............................ TATTTATCATTGTGTTTGAATAATAATTCTGAA 690708 28 100.0 33 ............................ CGAGTTAATCTCTGGCAGAATCTTGGACGCAAA 690769 28 100.0 33 ............................ TGAATTTGCGTCCAGCAAAGCGCCAATCAGTGG 690830 28 96.4 33 .......................A.... CGTTGAGCGGTTGAACCAATTTTGACTGAAAAA 690891 28 100.0 33 ............................ TGATGAGGGGCAGTATCGTTGTGAGTTCAAGAT 690952 28 96.4 33 .....................T...... CGATAACCAGAATGAAATGCGAAACATGCGAGC 691013 28 96.4 33 .....................T...... CCAGGACTTGAAAGATCAAGTAGCGGATTTAAG 691074 28 85.7 0 ....................A..A.A.T | ========== ====== ====== ====== ============================ ================================= ================== 8 28 96.9 33 GTCTTTCCCGCACACGCGGGGGTGATCC # Left flank : GATATTGTAAATGACCATATAATCGAGATAGGTGCCTATAAAGAAGTAAACGGTGTACCATTTACTTATCAATCACTAGTTAAGACTGATAGAGGGTTAAGTAAATCCATTACACAATTAACAGGATTAAGTGACGGTGATTTAAAAAATGGTCAGAGTTTAGAAAAAGCTTTAATAGGATTAGTAGATTTCATAGGAAACTTACCAATAGTTGGATATAATGTTTATTTTGATTTAAAGTTTATAAATAGAGATTTAAAAAAGCTATCTTACGGTACACTTGGTAATGATGTGATGGATATAATGGAATTTGTCAAAAAAGATAAACAATATGTTTCAGGTTATAAATTGAATGATGTGTTGAAAGAATATGGGATTGAAAATATGCAGCCACATAGAGCACTAGAAGATGCCAAGAGCACATACTTGCTTTCTAAAAAACTAAATGAATTTGTGAGAATTATAAATCAAAAATAGCATAACCAAGGGGATCTTTTAAT # Right flank : TTTATGAGTACAAAAAGTTTTTTCAGTTTTTAAAGCTGATGTAATATACACTCACAAAGTTGGAGTTTTTATATTGATGATTAAGCATGAGATTGAGTGGTTTATTAGGGTAATTGATTGTAGATTGTTCCTTCCATTTTTCTAGATAATACTAGTTTGCTGGGGGATTTTTGTTTATTCAGGAAACAAGCTACTTGTGAAGTATTTCCCGTGACTATTAGTCGAAATTGTGGTGGGAATATGCGATAATGTAGAGCAAGGAGTGATGGCTGTGAGTAAGGAATTGTTAGTATTGATCGATTATGAAGTGGATGTATTAGAGACGTTTCGAGAGATGGCTAGTGAGTATCAGTTGGTGAGTGAGTTTGAAGAAGCTGATTTTTCGAAGGTTGAGATCGTACTGGGTTGGGATGAGCGGTTAGTTGATGTGCTTGAGTCTGGTGAACATCAATTAAAGTGGATTCAGTTATCGACAGCTGGAGTGGATAAGTTGCCACTTG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : GTCTTTCCCGCACACGCGGGGTTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //