Array 1 743061-744289 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWG01000001.1 Vibrio cholerae strain VcCHNf7 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 743061 28 100.0 32 ............................ TGTGAGTGTTTCTGCTCTCGATAGCACCCCTT 743121 28 100.0 32 ............................ ACTCGGCGATCGCCGTCTCGCTAATCCTTGTG 743181 28 100.0 32 ............................ TACCCCGAATGGGTTCTTGAAGTAGAGTCGCG 743241 28 100.0 32 ............................ AGTCTCCTGTAATTTGCGTGAAACTTCCGCTT 743301 28 100.0 32 ............................ TTTTCTCTACATTCTGCCTATTTTCGATGGTA 743361 28 100.0 32 ............................ ATAAGGGAACAATTTACGTACTCATCCCCCCA 743421 28 100.0 32 ............................ TAGCAGAATTGCGCCAGAACCCCCGAACACGT 743481 28 100.0 32 ............................ TGTATCTTACATCACTCGTGGTGAGCAAGAAG 743541 28 100.0 32 ............................ TATTGACTATTGCATATACCGAAGATTTAGGC 743601 28 100.0 32 ............................ TCATTGCCGCGCTGGCGTTGTATCTTTCCATT 743661 28 100.0 32 ............................ TTTAATGTGATTGCTCATCACTCTTCCTCATC 743721 28 100.0 32 ............................ AGTACGGATACTCAGGGACGTTTGAAGAGTTT 743781 28 100.0 32 ............................ TCGAAGTAGATTTTCCGCGCCGCCTTTTCTAT 743841 28 100.0 32 ............................ CACAACAATCATTTCTGCTGCTTCAAGATCAT 743901 28 100.0 32 ............................ GTCTTTACGCAGCTTTCGCATAAAACGGTTTA 743961 28 100.0 32 ............................ TTGAACGTTTTTGGGGTAGCCACGTTTCAGAT 744021 28 100.0 32 ............................ TTAGTCCATCAACCGCATTCTTAACTTTGGCC 744081 28 100.0 32 ............................ ATAAAAGCTGAGCAAGCAGGCAGTGCGCGCAC 744141 28 100.0 33 ............................ TCCCACTCAAAATCTTGTTCAGAATTCCATTTC 744202 28 100.0 32 ............................ TTTATCAAGCGCATTCTGTAAATACGCTTTGT 744262 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGCAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GTCACGGAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32143-34092 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWG01000020.1 Vibrio cholerae strain VcCHNf7 Scaffold20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32143 28 100.0 32 ............................ TCAAGCACTTCAAAGCCGTGAACTTGGTGAAT 32203 28 100.0 32 ............................ GCATTAAGCGAACGGATAGATGTTGCTTTTAG 32263 28 100.0 32 ............................ TTGATGCAGCATAGTTTGCAGCCGCTTGAAAT 32323 28 100.0 32 ............................ CTCCAAAGAGAGCGTTCTACTCCTTGATGCAG 32383 28 100.0 32 ............................ TGCCATTGTGTCTATATGGCTCAGCATGTTGC 32443 28 100.0 32 ............................ ACGTGCATATTGCCTAAACTGCCCAGCTCTAT 32503 28 100.0 32 ............................ TCCTTTGCCTTTAACACCGGATGCCAGCGCTA 32563 28 100.0 32 ............................ TTTCATGATTTGGCTTAGCGTGGCAGGAGATA 32623 28 100.0 32 ............................ TCACCATCTGCAGGTTTTGCTAACTTACTTTC 32683 28 100.0 32 ............................ TGCGATTGATTTGTTGAAGGTTACACGTTCAA 32743 28 100.0 32 ............................ GATACAGGTCTGTAAATCGTCTTCTACATGAC 32803 28 100.0 32 ............................ ATTTCAGGCATTTCGCGACGAGCATTAGACGT 32863 28 100.0 32 ............................ AGTATTAGACTGCCATCAGGAAAGTGAAACTT 32923 28 100.0 32 ............................ TTCAATTTTCGCCTTCAGCTCTTTGCGCTGCT 32983 28 100.0 32 ............................ ACAAGCAGAACGGTTTCTTTGGTGCGCAAAAA 33043 28 100.0 32 ............................ CGGTTTTCAGTTCGCAGCAACATTCAGCATTC 33103 28 100.0 32 ............................ ACCACACGTCGGCGCGTTCAAATGATTTAATC 33163 28 100.0 32 ............................ AGTACGCGCCGCTTTACCTGTGACACGCAAAA 33223 28 100.0 32 ............................ ATGTAAAGCTGGTTGATTGATTCACATCGAGA 33283 28 100.0 32 ............................ TGAACGCCTAGGCCGCGCTCATTAATTCCCGA 33343 28 100.0 32 ............................ TAGCTCTGATAGCAGTTTGTCGGCTCGAATTA 33403 28 100.0 32 ............................ TATCACAAGAAAATTCAAGCCCACAAACAAAA 33463 28 100.0 33 ............................ TTTGAAGAGGCGACAACGATCACCTTGCAGCTT 33524 28 100.0 32 ............................ TTTAACCATGTCGGTGTTAAAAATCATTGGAA 33584 28 100.0 32 ............................ TTACGGCAATGGCCGTGTTAATAAAATCGTGT 33644 28 100.0 32 ............................ GTGATTTTCTCACCGGATACGGTCACAGATAA 33704 28 100.0 32 ............................ AGACTGGCGCTTGGCTTTATTGTCCGTTTCAA 33764 28 100.0 32 ............................ ACTTGCATCAGTTCTGACAGCAGAATGAGTAC 33824 28 100.0 32 ............................ TCCGACTGCACCGCAACCAGGTCAGACGGCGC 33884 28 100.0 32 ............................ GCTATCCGTTTTCGATTCTCAATCATTCGATC 33944 28 100.0 32 ............................ TGACCGAAGATCACAACGGGGTAAACGTCTGC 34004 28 100.0 32 ............................ TTTAATGGCTTGGGTTGGAACGGTCTCTTCTT 34064 28 92.9 0 ......................G.A... | T [34084] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGACCTCTCGTCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGGCGCAATTTAAGCAGTGCAAAGCTGCGGCGCTTAATTGCACGAGGGAGTATCAATAAAGAAGGTGAGCAGCGCTATAAAAAGAAGATGCTGAGCCAGAGTATTAAAGCTCCTTATCTTGACTTACAGAGTGGCTCTACAGGGCAAAAGTATCGTAAATTCTTTGAGTTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCTTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : ATCTTTATATATATTATGGTTGGGGTTATTTAAATGACAGTTTGCGTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAAATGTGTTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACCAAAATCGACCATTAATGCCTCTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGGGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGCTCACTGGCTGGCCTTGGTGAACTTTCGGAGAACTTCCTTGGTGTGGGTGAGAGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTCTCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGCCCTGAACTCCCGTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3139-2271 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWG01000034.1 Vibrio cholerae strain VcCHNf7 Scaffold34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3138 28 100.0 32 ............................ ACCACTTACCGCCGTTCATTGTTTTAACGCGC 3078 28 100.0 32 ............................ AACTGGCCGTAGCTGGATCACCTTTGAAGGCT 3018 28 100.0 32 ............................ ATCTTCTTCGGCCTCATCAATGCTGATTGAAG 2958 28 100.0 32 ............................ TCTAAAGAAGTGAGATCGGCAGCATTAAACCT 2898 28 100.0 32 ............................ TTTTTGTAAAAACTCGATTCAACGCTTGAAGA 2838 28 100.0 32 ............................ TCTTCGGTGTTGTCTTCAATTGCAGCGATCAG 2778 28 100.0 32 ............................ TACCGCCCGACCTCAAGGCCTTCACTATCTGT 2718 28 100.0 32 ............................ GCTATACAGTGACATTGAGGTGTGGTCGCCAG 2658 28 100.0 32 ............................ TAACGTTATGTTACCTAGGAAAATCTCGTTTC 2598 28 100.0 32 ............................ GAACCGGAAGACTCGACGGAGAAGGCGACAAG 2538 28 100.0 32 ............................ ATTGTCAAACTCAAGAAAGACTTCTTGAGGCT 2478 28 100.0 32 ............................ TTGAATGCGTCTTGAATCCCTTGTGGGTTCAG 2418 28 100.0 32 ............................ TTTTCCCGCATAGTTCTGCTGAGACGAGCAAC 2358 28 100.0 32 ............................ TAAAATCTTATCTGTGATTTCTTCTGCTGTTT 2298 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AACCTTTTCGAGAACACGTTATAGATCCAATAGAACAAGAAAAACAAGGAATAGCATACATTCCTGATGCTGACATTGAGCGTAAGCTAACTCCATTAGCACAACTTTCCCCATTATATAATCCGATCATACATCACTTGCAGGAAAAATACGGCCCTAGCTTTCTTATTCCAGTGGACTTCGACTCACCTGAATTATCAATTCGAACCGAGTGTGACGAAGATGAATAAGCCTAACAAACGCTTCAAGAGGGACAGCCAACGCATGGCATTTTTACTATGCATTGGTTTTTGTGGTTACGGTGTTATGCAGTAAGTTTGTAGTGGCGTTGTCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTGATAATAAATCCAGTAAAAAACAAAAGGTTATTTTGGGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAACCGCGGTGGTTATGGTTGTTGTATTTAAGTTTAGTGTTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTATATTTAATTGGAGTATGTAATGAAACCGACATTTTGGAAATTGTCACAAGGGACTGAATTTTTCACTTATGAAGATATGCTTCAGTCAATTGAAGATCGCTTAGTATATGTTCACAAGGATACAGCAGCTCAAGGACAGTCATCTGTAACTCAAGGGCAGACATTTGTTGAAGCTAAAATTGGTGATTACTTCTATTTAACACATGGTAATAACGGAGTGTATGTATTAGGACAATTTACAGGTCCGATAAATTACTTCTCGAATTGGGGAGATGGATGGTCCGATCGACCATTTCGCGTAATTGCTCGCTCAAAAACGCAGGAATGTTACACAGGAATTCAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //