Array 1 966260-961404 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRX01000005.1 Oligella urethralis strain NCTC11999, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 966259 36 100.0 30 .................................... TAGAGCGTCTTGCTGATGCGACCCAAGCAA 966193 36 100.0 30 .................................... CAGGTACGTCTTTATTGATTAAAAACGCAG 966127 36 100.0 30 .................................... CTGATAATATCGCTCAAACTTCGGGTCTAC 966061 36 100.0 30 .................................... CACTTGCAATCGCTGCTGTTGCGGCCGTGA 965995 36 100.0 30 .................................... CAGCCTCAATATCTAAGCCATCAAACTGAT 965929 36 100.0 30 .................................... AATCCAGTTCAACCACTGTGGCACCAGTTT 965863 36 100.0 30 .................................... CAGTATTGCGGGGCGGCTAGGACAGGTCGC 965797 36 100.0 30 .................................... GAGGGTAGATTTGTATCGCTGAGGTTTGAA 965731 36 100.0 30 .................................... GATTTTTATTACGAGCATGGGAAGTAGCTA 965665 36 100.0 29 .................................... CCGATGGTGGTGTTGAGCAAATCCGGCAC 965600 36 100.0 30 .................................... CTCAAAGAGTTGATTAAGTCAAGCTCTTCT 965534 36 100.0 29 .................................... CCAATATGCGAGCAGGCCTCATGCCGAGA 965469 36 100.0 30 .................................... CGCCGGTAGTTTTTCAAACAATCCACAAGC 965403 36 100.0 30 .................................... CGCTACAGGGTTGATCCAGTTTATTGATAG 965337 36 100.0 30 .................................... TGCAGTGGAACTCATAACGCTAGAGTGGCA 965271 36 100.0 30 .................................... TCAATCCTGGGTGTCCACTCAATAGAAAAA 965205 36 100.0 30 .................................... TTGGAGAATTAACAATGTGGTTCAAAAATC 965139 36 100.0 31 .................................... GAAACGGGGCTTAGGGTTCAGGAGATATGCC 965072 36 100.0 30 .................................... CTTATGCAAGCGACATCAAAAGTGAGAAAA 965006 36 100.0 30 .................................... TGCCTTAAATCATGAAATCGCAAATCAATA 964940 36 100.0 30 .................................... ACCGGTGGCCAGCTACGCGCTAATGATGCA 964874 36 100.0 30 .................................... GCAAGGCGTGAGGTGGCTTCATGCCTTAAA 964808 36 100.0 30 .................................... CAGCGGCCTTTTCATCGGCCCATGCCGGCA 964742 36 100.0 30 .................................... CGGAAGCCATTAATCCAGTCGTCGAAGGTA 964676 36 100.0 30 .................................... AGTTCAACGATAAGCAAAGAGGCAAAGAGC 964610 36 100.0 30 .................................... AAAGGAACGAGGGTAGTTCCGAAACGCAAG 964544 36 100.0 30 .................................... GCATTAACTTTAATTCAGAATCGTTAATAA 964478 36 100.0 30 .................................... ACGTTAAGCGACCCTTTCGGTGGCTCATTA 964412 36 100.0 30 .................................... CGTGGAAACCACATCCACAATGGCATCAGC 964346 36 100.0 30 .................................... TTAAATGAAAGTGCAACGTTGTTTAGACGC 964280 36 100.0 30 .................................... TTCTTTCTTCTAAAGGCACGTAGCCCGGCT 964214 36 100.0 31 .................................... CCAGTGCTTAGTTTTGATGTTAACGCCCCAA 964147 36 100.0 30 .................................... CGACATCCCAGTTCTTATAAAGCAGGATGC 964081 36 100.0 30 .................................... AACATAGCAATTTCTCCACAATTGACTTAA 964015 36 100.0 30 .................................... AAAAAGCGCAAGCAGAACAGATGCAAGCGC 963949 36 100.0 30 .................................... GCACCGCGCATTGTCGCGTATTAAAAAGCG 963883 36 100.0 30 .................................... CTGGTCGTACTGCTTCGCAGTTTCTAGTGC 963817 36 100.0 30 .................................... GCAATGCCGCGAGCTTCGTTGATGATTGTT 963751 36 100.0 30 .................................... TTTTTAAAGCATCTCGATCTATTTTCATCA 963685 36 100.0 31 .................................... CGTAACGACTCCGCCCACTCAAGTGGTGATA 963618 36 100.0 30 .................................... TTTTCTTCCTCGGTCATACCCACACCCCCA 963552 36 100.0 30 .................................... CAGTGGTGACAACTAGGGCTGTCACCAGTG 963486 36 100.0 29 .................................... TGCCTTTAAACGCACTTCCGACCGTATCG 963421 36 100.0 30 .................................... GAAAAATTAAATACATTACAGTGTATACAC 963355 36 100.0 30 .................................... ACCCGCCCCTTTGCGGCAGCGCTACGCCAG 963289 36 100.0 30 .................................... CGCATCTGGTCGCCAGTTTTCTTCGCGCTA 963223 36 100.0 30 .................................... CCTATCAATCTTGTTAAAGAGATTTGATTA 963157 36 100.0 30 .................................... TCATTGCTGAGATACTCAATAGCGATATCG 963091 36 100.0 30 .................................... TAACTGGCCTATCTAACGCAATTGGCTCTT 963025 36 100.0 30 .................................... CTGATAATATCGCTCAAACTTCGGGTCTAC 962959 36 100.0 30 .................................... TGGTTTGGGCAACAGCGTAAATGTTGGCAA 962893 36 100.0 30 .................................... ATCACTAGTACGTTCCTTTTTTACTAATTG 962827 36 100.0 29 .................................... CTTCTCATCAATTGATTTGAAATTACCTT 962762 36 100.0 30 .................................... AGCCCCGGCGGTTTTCCGTGCGCCCGGCTC 962696 36 100.0 30 .................................... CCATGTTGACGTTTTGCCGAAACGCTTAAC 962630 36 100.0 30 .................................... GTATTGTTCTAGCTTCTCCATCGCTCATTA 962564 36 100.0 30 .................................... CCTACATGCAAAATAAGCCCAATAATTAAG 962498 36 100.0 30 .................................... CTGAACTCGATATCACTGCGCAATTTGCCG 962432 36 100.0 30 .................................... TGTTTTAATGCGTCCCTCGATGTAAACAAG 962366 36 100.0 31 .................................... AAAGATGACATAAAAGAAAAAGAAGAAGAAA 962299 36 100.0 30 .................................... TAAATCGTTCGAGGAGGTCAAAACCTATTT 962233 36 100.0 31 .................................... AAAGATGACATAAAAGAAAAAGAAGAAGAAA 962166 36 100.0 30 .................................... TCTTGAAGCTGTCTTGATAGCTCATCTAAA 962100 36 100.0 30 .................................... AGGATTTACAATAGTGTTTTTTTGGATTCG 962034 36 100.0 30 .................................... GTAAAGAAGGCACAGGTAATTGGATATTAA 961968 36 100.0 30 .................................... TGGAGGACGCGGCTTGAGTTATCGATTGGT 961902 36 100.0 31 .................................... TTAAAAGGGGGTGGTAAATGAGTAAAGTAGG 961835 36 100.0 30 .................................... AATGAACTCACGTTGTAATTTAGCGGCTTC 961769 36 100.0 30 .................................... GCCTGCGGGCATTGGCAGACCTGATAGTTA 961703 36 100.0 30 .................................... CGATATTAAAGTAGGGTCGGACAAGGCCGC 961637 36 97.2 30 .........C.......................... CAGCGATGCGATATTGCTTCGGCGTGTACT 961571 36 97.2 30 .........C.......................... CAGTTGCTGTGTCTAGCTCACCTTGCAACC 961505 36 97.2 30 .........C.......................... TCGGCGATTGGTCGCAGCAAAGCAACTAAT 961439 36 97.2 0 .........C.......................... | ========== ====== ====== ====== ==================================== =============================== ================== 74 36 99.8 30 AGTTTAACATATTAGGATTTGTGCACTGACTGGAAC # Left flank : TTATCTGTCTCCTTGGCACAAGTATTTCTTGAGCAAAGAAAAGGGTTAGAGCTACCGAAGGAGATGACCATGATTAACTATGCTGCTTTTTAAAGGTTAAAATCATGTTTTCAGGATATAGATTTATGTGGCTACTTGTTATGTTCGATCTACCGGTGCTTTCAAAGGCTGAAAGGAAAGAGGCCAGTGAGTTTCGGATGTCTCTTTTAGATGAAGGCTTTCACATGGTTCAATTTAGCGTGTATGCTAGATGTTGTACAAGCCCAAAGCAAATTGATACCTATTGTAAGAGGATTGAAGGCGCACTTCCCGCTGGTGGTGAAGTGCAGATATTGCAATTCACCGACAAACAATATGCGAATATCATCACTTATTATGGAAAAAAGAAACAGCCAGCAAAAAAAATACCTGATCAGTTCAGTTTGTTCTGATATTTTTGCTGTTTTTTATATGAAAAACCCCAGTAAGTTGTATTTAAATCAAAGGCTTACTGGGGTTCT # Right flank : TAAGCTGCCTCTACGACAGATATGCTTGCGATTATAACACTTTGGCACTCTCACAGCATTGGTAAAAATCCGTTCGAGCTGTCTTTTGGTTAATGCAATTAGCATGGTAAACAATAAAGATGGAAGTAATATCTGTTGTCTGGTAATTGGCTGTCCATCGTTTGATAGTAGGTTCTAAAGTCATGTTGTACTCCATGTGTTAGAGCAACTTTAACATGTACAGTTATTCTCTGGGTCATAATACTTAGAAATTAAACTGCAAAGCAGGTTTAATTTATTATGTGAATGTACTAATATTTAAATATAAACATTCTATTAATATGATATATATGTCGCAGCTTGCTCAGTATAAAAGGTGGATTCATTATGCCTAAAGAATTTGACCCATTAAAACCTGCTAAGTACAGGTTAGCTCTTGATATCGGTTCTAAGTCAATAGGTTTTGCCATTATTTTTTTAAAAGAAGATGTTAATAAACTATTAAAGCCTTACGCTATTGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTAACATATTAGGATTTGTGCACTGACTGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 1868424-1866626 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRX01000005.1 Oligella urethralis strain NCTC11999, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1868423 28 100.0 33 ............................ TCTTACCGGAACGACTCATTGCCGGCACCTTAG 1868362 28 100.0 33 ............................ TCGGTTACTCATCTACTGCATAGCGCAGGAGCG 1868301 28 100.0 33 ............................ CAACCGCCATCACGATCCCAACAGAGTACCTTA 1868240 28 100.0 33 ............................ CGTCCCAGAGGACAGCGAGGTGCTGGAGGAAGA 1868179 28 100.0 33 ............................ TTTCTCACCAGCCAAAAATCTTTCCTTAAGCTT 1868118 28 100.0 33 ............................ CCACACCAAGTGGATAGGTACCCCTAATGGCTT 1868057 28 100.0 33 ............................ TCATGGAATCGCAAATCATTAAAATATTTATCA 1867996 28 100.0 33 ............................ CAACAAGTGATAGCGCTAGATGAGTCGGCCAAG 1867935 28 100.0 33 ............................ CAATGGGAGGTAGTATTCCCGCCCTACGACTAG 1867874 28 100.0 33 ............................ TCTTACCCTCTTTGATTCGCTTATCGAGCGTCG 1867813 28 100.0 33 ............................ TTTTAATGCCTCACGAGTCGCTAGGACATCGAA 1867752 28 100.0 33 ............................ CAATACATAAATCTATTTGCGTACAACAAACCA 1867691 28 100.0 33 ............................ CGACTACACGCTAAGCGTATCTAGTTACGTACA 1867630 28 100.0 33 ............................ CACACAATCAAAAGCTTACGTGAACAGTTTAGG 1867569 28 100.0 33 ............................ TAATCAGGTCATTGCGGTAGCTGACAGACCAAG 1867508 28 100.0 33 ............................ TAGTGATTCAGCATTGGCGTGCCAGAGCGCCTA 1867447 28 100.0 33 ............................ TATCTAAATCTAACGCAATCCAATACGCTCGAT 1867386 28 100.0 33 ............................ CGTATTGAACGTAAAAGTCGTAAAGAAGCTGAG 1867325 28 100.0 33 ............................ TGCTAGATCGTTGGGATCGCATCAGCAAGACGC 1867264 28 100.0 33 ............................ CAGAAAAAGGATAGTAAGGGATCTTTGAGAGTC 1867203 28 100.0 33 ............................ TCAAAGAGGCTCAAAACATCTTAGCCGACAACA 1867142 28 100.0 33 ............................ CGATCCAAACCCGCTCATGGCAGACGTGCTGGA 1867081 28 100.0 33 ............................ TGGACGAGAGGATAACTCAGAAATGCGGGCTAT 1867020 28 100.0 33 ............................ TAAAGGAATCGAGTTTTAGATGTATTATATTTA 1866959 28 100.0 33 ............................ TAGCCCTTGGTGTGTTCGCGCCAGTACGGTGCG 1866898 28 100.0 33 ............................ CGGACACGGGGAAAGCCATAACCGGACGATCCG 1866837 28 100.0 33 ............................ CTTGATCTAGTGCTTGATCTCTTTTTAATTTGG 1866776 28 100.0 33 ............................ TTATTTATAAAATCTTCTTTATCATAGTGGTAG 1866715 28 100.0 33 ............................ TTATTTATAAAATCTTCTTTATCATAGTGGTAG 1866654 28 96.4 0 ..........................C. | G [1866632] ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 33 GTCTTCCCCACGCGAGTGGGGGTGTTTC # Left flank : TTATATAAGGAACACTTGTGTATTGATCTAGCTTTTTCGCTAACCTTGGATATGGGTGGTCGATACAATAAACATAAGGTTTCATCTGCTTTTCGTCAGCGAGCAATCGACATGGGGTTGCTGGCTAAGATAGCGCCAGACATAGCTGAATTACTTGGAGAGAAGAGTGCTCGTCGTTTTAGCAAATGATCTTCCACCAGCAGTACGTGGTCGAATAAAGCTTTGGTTTACGGAGCCTCGGCCAAATGTTTTTGTTTCAGGCATTAATGATTCAGTCGCTGAAAAAGTGATTGACTATTTATTCGAACATTGTCTTCCTGAGTCTGGTGTGATGGTTTTTCAATCTCTGTCTAAACCGCCAGGCTATAAGATATTCACTATTGGTCCGACAAGAAAAAAATTAGTAGAGCTCAGTGGGTTACAATTAGTGGTCGAAACCCTTAAAACGGGATAATGCCTATATGTTGTGTTAAAGTATTGCTCTTTAACAATATGTTGGT # Right flank : TTAGCCCCTAAAAAGTCTGAAGTTCAGACTTTGTCTTTCCCCACCCTCTGATTAGTAATCAGCAATTCATTCAGTTTTCCCCGTTTAGATGCCTTGGAATTAATCGCTCGAGTGGCTTGAACTCGCCGGATATGATAGTTGCTATACAGTTCATCAAAAAAGTGATTGTTACTATCTGAGTTCTTAGGATCCGAATTGCTTAAAATCCATACGTGCCCTAAGGCATCTAATTGATGGCAAAAATTCGCTAAGGCAATTTGCGCATCATCATCAAACTCATTTTTTGCATAGGCATTAAAACTGGAGGTGGTGCTCAAGGGCTTATAGGGTGGATCGAAATAGAATACATTATGTTCCTCATCAATAGCTGACAGGGTGTCTCTATAACTACCATTAAGAATATCTACCTTTTGCAGCGCCTGGTGTACCGCTAGGAGATTAGCGCTATCGCAGATAGTGGGTTTACGATAGTCGCCCATAGGCACATTAAATTCATTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCGAGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //