Array 1 10325-11886 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985186.1 Methanobrevibacter oralis strain M2 CSUR P5920, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================== ================== 10325 34 100.0 39 .................................. AGCTGATGAAGCTAGAATTGCTGAATTAGCGATAGATAA 10398 34 100.0 38 .................................. AGCACTTTATTATTTGATTCATTTTTTAATGAATTCGA 10470 34 100.0 38 .................................. AGCCCCATCAACCTCCAAGTTTCCCTAGGAGTCAACCG 10542 34 100.0 39 .................................. AGCATTTTTTGCTAATAGTCATAACCATTTGGTTTTAAA 10615 34 100.0 39 .................................. AGCTTGGCGACTTCTTCCTCGCTTAATTTTCCTACTATT 10688 34 100.0 38 .................................. AGCTCCTTGCTATTCATTTTTTCACCAACTACGCGGGG 10760 34 100.0 39 .................................. AGCTGAGGCGACAGGCGAGAAAAATAAACCCCATTTAAA 10833 34 100.0 39 .................................. AGCATGTCCAGTCTCAGATGGTCAACTGCAGAAATTTTT 10906 34 100.0 40 .................................. AGCCTTATCAGCGCATGTAATACCGTATTCGGCTAAAGAG 10980 34 100.0 39 .................................. AGCCCCCTTTCTTCTCTTCTATTCTTCTGTTCCTCCAGG 11053 34 100.0 39 .................................. GGCCCTTAAATTCCTTATTATTCGTTTTTTTCACCAACT 11126 34 100.0 38 .................................. GGCTTTATAGTGAAGAATATATAAGATTGGTTAATTTA 11198 34 100.0 39 .................................. GGCAATAAATAGGTTTTTGTTGTATATATATATTGCTAT 11271 34 100.0 38 .................................. GGTTAAAGTCTTTTAATAGCTTTTTTGAGGGTTTTGAG 11343 34 100.0 38 .................................. GGTGATGAATAAGATAATAAAATTTTCAAATTCTCTTT 11415 34 100.0 39 .................................. GGCCTAGAAGACGATATAGAATAACTAACTCAAACCCAA 11488 34 100.0 39 .................................. GGCTAATAAACCGATAATGAACCCTAAACTAGAATTGTT 11561 34 100.0 39 .................................. GGCAAAATCCATTGACTGTTAATATCTGTTCCTAATTCG 11634 34 100.0 40 .................................. GGCAGGAATAGGTTGGGATTTGGTTTTAACTGACATTCCT 11708 34 100.0 37 .................................. GGCCCCTATGGAGGACATCCTCCACACACACCATCAC 11779 34 100.0 40 .................................. GGAATCTTAGCAATATGTTTATCATAAACTTGTTAAAAAC 11853 34 76.5 0 ........AC..............T.GAT..AA. | ========== ====== ====== ====== ================================== ======================================== ================== 22 34 98.9 39 ATTGCAAAGTTAATTCCATAAAAACAAGGATTGT # Left flank : AGGTAAAATTTTTATCAAAGAACCATGTAGAAAATTACTGATTAAAACAGTTCTTGATAAACTTAACAATGAAATTACATTTGAAGGATATAAAAATAACTATTCTAATTTTATAGCTATTGAATCACAACATATTGTGGAATTTTTACTTTACAATAAACAGTATAAGACGTTTTATCTAAGATGGTAAAATTGCGTAAACCTCAAAATATTTACTTAACAATAAAATTTTGTTAATTTTTACCTAAAATTTATTTTTAATAATTCTTTTTTAATTAATTAATTGTATATACTTTGGAATTATATTACTTGTTTTAGGTAAAATTTGTTGTTGATTTTATTTTTTAGCTATTTTTTAATAAAATTTTAATTAGAAACTTATTTATAGTACGCGTGCATATCTTTATATAGACTTTTACTTTTTTTTATTTGCACATGAAAGTCTAAAATCACAGAGATTTGTGGTAGCTATTGTCTGAAATGATAGGATTTTCGACGCT # Right flank : ACTCATTAAATCAGTTTATATAATTTAAATTAAATGGGTAATGTTATCATAGTAAAAGATTTTTCTAATTCAAAGGGGTTTGTCAATAAATCCATTTTTTCGTAATTTTTCTTGTTTCTTCTATTTTTAAGTTAATTTGGTTTTGGTTTTTATTTTAGAGTTCTTTGGTTCTTTTATTTTTTTTACATGTTTTTGATTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAAAGTTAATTCCATAAAAACAAGGATTGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 38910-40129 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985106.1 Methanobrevibacter oralis strain M2 CSUR P5920, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 38910 30 100.0 34 .............................. GTGTAATGCATCACATATTCACTATCCATGTCAA 38974 30 100.0 36 .............................. ATACTAAATCCAGCAGTATCGAGTTTAAATATAGCA 39040 30 100.0 36 .............................. TAAGATAATTAAAATTAAATTAACGAATAACAATAC 39106 30 100.0 36 .............................. GATTATTATAGAGCATCAATGAAAAAATATGCTACA 39172 30 100.0 37 .............................. AATAATGTTATTAAGATTGTAACTAACCATTTTAAGA 39239 30 100.0 36 .............................. TTCCTTTGTAAGTTCATGTTCAACTTTATTTTCATC 39305 30 100.0 36 .............................. TTATTGACCATCTCTTACATATTTTAATTTTCTTAA 39371 30 100.0 36 .............................. ATGTATATCAAGAGGCAACTATTGGACAATTCACAT 39437 30 100.0 36 .............................. TTGCTTAAACATGCAAATAAATAATCAAACAATTGA 39503 30 100.0 37 .............................. TAAACCAAGAAAAAAACAAACACCCCCAAAAAACACT 39570 30 100.0 36 .............................. CAACATAGTATAGATGATAAATATACTTATAATCAA 39636 30 100.0 37 .............................. AATTTAGATGGGACACATGGAGCAAGGTATAAATATT 39703 30 100.0 35 .............................. GATTGCTCAACACAAGACCCAGCGACAGCAAAAAA 39768 30 100.0 37 .............................. GGGCGTATCCTAGGATTTTTATCCCCCGGTAATAATA 39835 30 100.0 35 .............................. CAAAAAAAGGAAAGTAGGTATGTTAAGACCTTCAA 39900 30 100.0 38 .............................. TAAAACTCATGAGTATTAATTTTGCCGGAACCTTTAAT 39968 30 100.0 36 .............................. TTATTGACCATCTCTTACATATTTTAATTTTCTTAA 40034 30 100.0 36 .............................. ATGTATATCAAGAGGCAACTATTGGACAATTCACAT 40100 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 100.0 36 ATGTTAATCAGACCAATTTGGGATTGAAAT # Left flank : ATATCTTCACCTGATGATTATTTAATTAAAAGTTTGGTCAATGGATTTTTAGAAACATTAGAAGTAAACTTAAATGGGCAAAAATTATTGGTTGAAAAAATTGAACTATTAAAAGAACCTAATTTTACACATAAAATGGAATTTAAGACGTTATCTCCAATAATAGCTAGAACTAAAAGGGAAATTGATGGAAACTTAAAAGAATGGGATTTAACTCCTGGAGATGAATTTTTTAAAGCTTTAGAGAAAAATCTTATAAAAAAATATAAAAAATATAATGAAATTGAGGAAACAGATAAAGAAATAAAAATTTATTCTGAGATGAAAAATGTTAAAAGAAAAAGAATAGCTATTGTTAAAGGACCTCAAACAACATACCATAGAGCATTTATGATGGATTTAATTCTTGAAGGTGATTTAAATTTGATTAAATTTGCTTATGATTGTGGATTTGGAGAAAAAAATAGTATAAGAGCCATAATAGCTGCTATTACTGCTGC # Right flank : TTTGCTTAAACATGCAAATAAATAATCAAACAATTGAATGTTAATCAGACCAATTTGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATCAGACCAATTTGGGATTGAAATATGTATATCAAGAGGCAACTATTGGACAATTCACATATGTTAATCAGACCAATTTGGGATTGAAATTTGCTTAAACATGCAAATAAATAATCAAACAATTGAATGTTAATCAGACCAATTTGGGATTGATGACTGGTTATTAAGTTGGGCGTCATCTGAAACATATGTTAATCAGACCAATTTGGGATTGAAATCTACACATTTCAAAAACAAAAAGCCACATAAGGGGATGTTAATCAGACCAATTTGGGATTGAAATCCCAATACTCGAAAAGATATCGATATACAAATAGAAAATGTTAATCAGAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTAATCAGACCAATTTGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 2 40356-41414 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985106.1 Methanobrevibacter oralis strain M2 CSUR P5920, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 40356 30 100.0 36 .............................. TTGCTTAAACATGCAAATAAATAATCAAACAATTGA 40422 30 90.0 32 ...........................TGA CTGGTTATTAAGTTGGGCGTCATCTGAAACAT 40484 30 100.0 35 .............................. CTACACATTTCAAAAACAAAAAGCCACATAAGGGG 40549 30 100.0 37 .............................. CCCAATACTCGAAAAGATATCGATATACAAATAGAAA 40616 30 100.0 37 .............................. TAACTATAACCAGGTGGTGACGATGAAATCACAAGTA 40683 30 100.0 36 .............................. ATTGATTATAGCCTAGACACAAAACAAAGTAGAACA 40749 30 100.0 39 .............................. GATAAATCCTATCAATATTCTCTGATTTAAGAAAGTGCA 40818 30 100.0 38 .............................. CAGTGGAATAGGTGTAGTCTATTCCATCCTCACTCCCT 40886 30 100.0 36 .............................. TGCTGTACTTGTTGCAAGACAAATACGAGGTGTGAT 40952 30 100.0 37 .............................. AGCCTTGGTAAGCCTAGTAAGAAGAAGAGTGAGGATG 41019 30 100.0 37 .............................. GGATTATATTTAAAAAAAGAAATATTCTAACCTAATA 41086 30 100.0 37 .............................. CCTCAAGAGTGTTATTCACATTCTTCACCTTCTATAA 41153 30 100.0 35 .............................. CAATTCATCATCAGTAATAATCACATCATTACCAG 41218 30 100.0 37 .............................. ACACTCAACAAACCTTGCAACTGTACAGCTGTAACCT 41285 30 100.0 36 .............................. TAAATTTTCCCATCAATTTCAAGAAAAACATTGCTT 41351 30 96.7 5 ..................G........... CATGG Deletion [41386] 41386 29 73.3 0 ........T..-...TAA...TT..A.... | ========== ====== ====== ====== ============================== ======================================= ================== 17 30 97.6 34 ATGTTAATCAGACCAATTTGGGATTGAAAT # Left flank : GATTGAAATCAAAAAAAGGAAAGTAGGTATGTTAAGACCTTCAAATGTTAATCAGACCAATTTGGGATTGAAATTAAAACTCATGAGTATTAATTTTGCCGGAACCTTTAATATGTTAATCAGACCAATTTGGGATTGAAATTTATTGACCATCTCTTACATATTTTAATTTTCTTAAATGTTAATCAGACCAATTTGGGATTGAAATATGTATATCAAGAGGCAACTATTGGACAATTCACATATGTTAATCAGACCAATTTGGGATTGAAATTTGCTTAAACATGCAAATAAATAATCAAACAATTGAATGTTAATCAGACCAATTTGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATCAGACCAATTTGGGATTGAAATATGTATATCAAGAGGCAACTATTGGACAATTCACAT # Right flank : TAAAAAAATAAAATTGGGAATAATTTTTATTCCCTTTCTTTTTTAAGTGATTGAACCATGTCAATCTTTTTAAGTTTTCTTGTTAATAGGTAATTAACAATTAATGACAGCACTATAGTTAAAATAAAGCTTAATATTATAGTTCTTGCAGTATAATGTGTTGGGTAGAAGAATGTATCACCAACGGTATCCCACATGAAGTCTAGAACTGCATATCCTGTTGGTACACCAAGTACATATCCAACAATAGATAATGCTAGGTTTTGTGTTAAGAATAGCTTTTGTAGGTTTTTAGTTTTAAAACCAAGTACCTTTAATGTTGCCATGTCTCGCTCAACTTCGGTAAATCCGAGAATTCCTAAACTATACAGTACAACTATTGATAAAACAATTGCAAATATTAATAATGCTCCAACCATTAAATTGGCAGTTTCTGTTAAATCATCCCAACTTTTTACCAAATCGTTTATGGAATTTGCACTAGCTACACCAGTTAAATT # Questionable array : NO Score: 8.99 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTAATCAGACCAATTTGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //