Array 1 1955-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQZX01000122.1 Chromobacterium violaceum strain LMG 3953 NODE_182_length_9960_cov_30.465261, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1954 29 100.0 32 ............................. ACCTGGCCTTCCTTCGTGGCGATGGCAGCGGC 1893 29 100.0 33 ............................. CAGGCCGGCTCAATAGTCCCGTATCAGGGTTAT 1831 29 100.0 32 ............................. CCCCCGGCTTGCGGGGGCTTGTTCATCCCCAT 1770 29 100.0 32 ............................. GAGCTGGACGCCCTGATGCGCGCCGCGGAGCG 1709 29 100.0 32 ............................. CCCGTCGAGTCCGGGCTTTCTCATATGTGAAT 1648 29 100.0 33 ............................. TGCCGTCCTCCGCAATAATTGTCGCGACGTCTG 1586 29 96.6 32 ............................T ACTACTACACCATCGTCACCCCGAGATAAAAC 1525 29 100.0 33 ............................. TATTTTGACGAAATGGTTTTAGGCCCGACAGCC 1463 29 100.0 32 ............................. ATGAGCGCAGCAAAACTGCGCTTGATGTGGCT 1402 29 100.0 32 ............................. CGCCAGCTCGCTGAGAAGCTTGTCCTTGAAAA 1341 29 100.0 32 ............................. CCCCGCAACTGCGGGGCTTTGTTATTTCCAGC 1280 29 100.0 32 ............................. CGCCGGCCACACGTAAGCGCTGCCCGGTTACA 1219 29 100.0 32 ............................. CCGCGCGCGCCACGCTGCTGGCGTATGCCGAG 1158 29 100.0 32 ............................. CAATCTGCAGATTTCTCGCTGTACGGTTTTCG 1097 29 100.0 32 ............................. CCGCCTGGGCCACCCAGCAAGCGCTCCGTCAC 1036 29 100.0 32 ............................. CTGCGCATGCTCACCCCACGCGAGCTCTACAA 975 29 100.0 32 ............................. GGTGAGGCGGTCAGCAAAAACGATACGAGAAC 914 29 100.0 32 ............................. GCTCGCTGGCGGCCGCTGCCGGTTCAGGATCC 853 29 100.0 32 ............................. ACCTTCGCCAACAAGACCCAGGCGCAGGCCGC 792 29 100.0 32 ............................. CTGCTGGTGGCCGGAGGGCGCGGAGGTGGAAA 731 29 100.0 32 ............................. CCGGCGTTTACACCGAGCTGGAAGCGAGGAGC 670 29 100.0 32 ............................. CGCCAGGTTCCGCTATCCAGCGTGGCCATCGC 609 29 100.0 32 ............................. GCATATGAATGCTCGTTCTGTTGTAATTGACA 548 29 100.0 32 ............................. TACACCCCAGTCCCGCCGCTGGAAAACCTTCA 487 29 100.0 32 ............................. GCCATGGTGCGCGAGCTGCAGATTGCCGCAAA 426 29 100.0 32 ............................. CGAAACACGCTTGCATGCGCTTATGCCTTTGT 365 29 100.0 32 ............................. TTGTCGCGGATATGCAGAGCCGTTACGAAATA 304 29 100.0 32 ............................. CTGCAGCGCGGCGTGGCGGAATTCTCCATCAC 243 29 100.0 32 ............................. TATCGGCACCTGTTTGACCCACGACAAGTGGG 182 29 100.0 32 ............................. ATTGGCGATGTCCTGGCCCGCTAAGGCGGCAT 121 29 100.0 32 ............................. GTGTTATGCGCGCGCCGAAGGTAAACCAACGC 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.9 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCCTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGTTTCGCCGACGGCAGCCGGCTTACCGCCAACTTCGGCCCCGCGCTGGTCCGTTACGATAAGCAAACCCTGCCGCCGCAAAGCCGGCTGGCCGAGCTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTGGCGGATTGCGTCGGCAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGCCGTGGCGCGGCGGTTTCCCATGGCCGGCGAGCGGCATTGCCGAGCGATCTAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTGGGGTGGGTTTTTGTCTTTAAAAATCAGCATCTTGAAATTGGT # Right flank : GCCGTGCCGGCCGCTGGAGCCGGTAACGGTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9990-9228 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQZX01000122.1 Chromobacterium violaceum strain LMG 3953 NODE_182_length_9960_cov_30.465261, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9989 29 100.0 32 ............................. AAAAAGGGCGCACGCATCAATCTTGAACACTA 9928 29 100.0 32 ............................. GCGGAGCTGGAGTCTATGACCGTTCGCTTGCA 9867 29 100.0 32 ............................. CCTGGGAGCAATTTCCACCCTGATATTCCAGA 9806 29 100.0 32 ............................. GCCAAGCTGGAGCGCGGCGGCCTGCCGCTGCG 9745 29 100.0 32 ............................. GTGGCGCAGTGGCCGGTGGTGCGCCCGTTCCA 9684 29 100.0 32 ............................. CAGGATTCGACCTTTTTGCGTGTCAGCTCGGC 9623 29 100.0 32 ............................. TAGCAGGCAGTAACCCCCCCTACGGGCATGGC 9562 29 100.0 32 ............................. CATGGCATCAAGCTGAAGGATACCGTTCACAA 9501 29 100.0 32 ............................. TAACCATACCTTAGGTGCAATGATGATTTGCA 9440 29 100.0 32 ............................. GCGAGGCTGACCCGCTGATGCAGTACATCCGC 9379 29 100.0 33 ............................. TACTGAAAGGTAAGAAAAAATGAGCCGCAAATG 9317 29 93.1 32 .........................G..A AAGCCAGTGCCTCAAGGCTTGAGGGTTCGAGA 9256 29 69.0 0 A.A.........GTT..........GTGA | ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.1 32 GTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : CGCAGCAGGCCGCCGCCGGGCGTGTTTGGA # Right flank : CGGGGGACGGCTGGAGTGGTGTCGCGGCGCTGCCAGTCCGGCCGCGTCCGGCAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTTCTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTTACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGATCCAGCACCACTACGTCGAACTTGTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19241-20368 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQZX01000143.1 Chromobacterium violaceum strain LMG 3953 NODE_222_length_20339_cov_28.144550, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19241 29 100.0 32 ............................. CATCGGCACCGGCTCACCGAATGAAAACGCCA 19302 29 100.0 32 ............................. AGCGCCAGGCGCGGGAGGTGGCTGCGCGCAAT 19363 29 100.0 32 ............................. CCGGCTCGTCGCCTCGTGCCTCAAATCGTGAA 19424 29 100.0 32 ............................. CCGGCCAGCGCGCTGGTGCTGTCGTCCTCCAG 19485 29 100.0 32 ............................. CCGGCGTATACCTGGGAACAGGCTTGCGTACG 19546 29 100.0 32 ............................. GCGGTTATCTGGGACGAATGCCACCACATCGG 19607 29 100.0 32 ............................. CCCGCGGCGGCTACGCTGGCGGCGCGGCCAAG 19668 29 100.0 32 ............................. CCCACTCGAACCTGGCGTGTGGCTGATACCAG 19729 29 100.0 32 ............................. CGACGGCCGGTCATCATCCCGTCGGGCATCCC 19790 29 100.0 32 ............................. GGATTGAAGGAAACGAACCTTACCAACTTTTA 19851 29 96.6 32 ............................A GATGCGGCAGAATTGGGAATTGCTACGTCAGC 19912 29 100.0 32 ............................. AAGGAAAAGACAACAAGGCGTGTTGACAAGCG 19973 29 100.0 32 ............................. GAATAGTAAATGTCTTTCGTCATTGTTGCAAC 20034 29 100.0 32 ............................. GCGGGGGCGCTGGCCGTGGCAGCCGGAGCCGC 20095 29 100.0 32 ............................. CAAACGCTGCTGGAATCGTTCCCGCCGCATCA 20156 29 100.0 33 ............................. CACGTTATAAACGTCATCAATGCCACGAAACTT 20218 29 100.0 32 ............................. CCGCCAATCCCCTGAGTTTGCGGAGTGAGATT 20279 29 100.0 32 ............................. AATCAGAACAATCAACTCCATTGCAAATTGCC 20340 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 GTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : TGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCCAGGCTCAGCGGCTTGCCCGGGCCAATCAGGTGCTGCTGGCCGATCACCTGGTCGAGCGCTTGCGGGCGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTCGGCGGGATGGGGCGGAGAAACAGTATACCAGTTGGGGACACGCATGAAAAAAGTGGCAGTCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTACGCTATGGCTGCTGGCCTAGCCTAAGCCTTGCTGTTGCGGAAGCTTGGCGTTCAGCATCAGAGGCGAGCGGTGTCGGACCCTTGTGCAAGGGACGATTTGCCAAGGCCTGGCGGGGTTTGTCGTGCTGATTTGAACGCCGCTTCATGGCTGGTAAAATCGGTAGAATTTCAGAGCGGGTTTTTGTCTTTAAAAATCAGCAGCTTGAAAATGGT # Right flank : CCGCAGCAGGCCGCCGCCGGGCGTGTTTGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32-366 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQZX01000107.1 Chromobacterium violaceum strain LMG 3953 NODE_156_length_44596_cov_26.926182, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32 29 100.0 32 ............................. GCGCGCGCGACAAACCGCCTCTCCTCAGCCAA 93 29 100.0 32 ............................. CCGATGGGCGAGACCAAGCGCGGAGTATTGCG 154 29 100.0 33 ............................. AGTGGCACCATTTGTGCCTACCTGCTATCACCG 216 29 93.1 32 ............CC............... CCTTGCTTCGCATGCAGTTCTGGGTGGTACAA 277 29 100.0 32 ............................. TCGGCTGGCACAAAACGCAGACCAGAGAGGAG 338 29 100.0 0 ............................. | Deletion [401] ========== ====== ====== ====== ============================= ================================= ================== 6 29 98.9 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : CGTGCCGGCCGCTGGAGCCGGTAACGGTGGAG # Right flank : GTTCATCTACTGGCAGTGATACGGGATTTCAAAAATATGGGGATTGAAGCGTGGGCGATGGTTGTGGGAATCGTCAGGCCAAACGGCAGGTACAACTCTCGACCCTGCAAGTCGCTGCCTAGAGAAGTCCCATGGCATGAGTTATGTCAATATTCTTATTGATCAAAATGACAATGTGCTTTTGGGCTGATAGCCTGCGCGCTTGGGTTGGTTCCAGTTGGCAGATCGGTTTTCACTGGGAGAGGCGATGCAGACAGAGTTGGACGGCAAAAAAGAGGTTCATGAACCCTCCAGTGTAACCGGACTAAGTTTTGATGATCTGCACCCCGCGGTCCGACAGCTATGGGCCAAAAGCGGTGACCCGATTGGCCATGGCCTGTTATGTCACATGCTGGACGTGGCTGCGGTGACCAGAGCTTTGCTCGACTACTGCGGGATTTCGGCCAAGGCGTTGGCGCTGCGTTTCGGCCTGCCCGAATGCGCGGTGTTTCCATGGTTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9142-12650 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQZX01000107.1 Chromobacterium violaceum strain LMG 3953 NODE_156_length_44596_cov_26.926182, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 9142 29 100.0 32 ............................. ATGAGCGACTACATCGGCCTCAATCCGCATAC 9203 29 100.0 32 ............................. TCGTTTGGAATGACGATGCGCAGGTATGCGAC 9264 29 100.0 32 ............................. CACTGGGGCAAATACAACCCTGGCGAGGTGGC 9325 29 100.0 32 ............................. ACCATGAGGCCGTTGACCCTGTCGAGGAAATG 9386 29 100.0 32 ............................. TTGGCAGCGAAGCGCAGTTTACTGGTGGCCAT 9447 29 100.0 32 ............................. GGGATGGTCCGGCCATTCTCATACCGGCTGCC 9508 29 100.0 32 ............................. ATTTTGTATTCGTCCAACGTACACCCCCAAGA 9569 29 100.0 32 ............................. ATGAACGCTAAGGCTGCGATAGAGAAATGTTG 9630 29 100.0 32 ............................. CCGACCGGCGTCCAGTTCATCAGGTAGTCCAC 9691 29 100.0 32 ............................. GCGCGAAGCTGGCGGAATGGAATCCGCAATAC 9752 29 100.0 32 ............................. CCAAGGGTGGTGCCTGGCTATCCGGTGCGCAG 9813 29 100.0 32 ............................. GGTAACTTATGGTTCTAATCTTCACCCCAACA 9874 29 100.0 32 ............................. CGGGACATTGGGTGTTTCGGCTGCCGCAGGGG 9935 29 100.0 32 ............................. CTGTTCGGATCCGGCTTGGGCGTGGGTAGCGC 9996 29 100.0 32 ............................. ATTTCAATCATCTCTTGCCTCAGTATTCAGAG 10057 29 100.0 32 ............................. AGGACCGGGACAGGTATACCGTAACACTTGAC 10118 29 100.0 32 ............................. CGCGATGCGCGCCAAGCGATCAGCGTTCAGGT 10179 29 100.0 33 ............................. GATGGCGGAGTCCAGTTTGAGGTTATGAGCAAG 10241 29 100.0 32 ............................. TACTTTGATGAAATGGTTTTAGGCCCGACAGC 10302 29 100.0 32 ............................. GCGAACGAAAGCAAGTCATCCCCTATTCCTGG 10363 29 100.0 32 ............................. CCGTCGACGCCTGCGCCTGCCCCCGCTCCGGG 10424 29 100.0 32 ............................. ACCGACATCACCTATTACCGCCAGGTCATGGA 10485 29 100.0 32 ............................. TCATTGAACTGCGCAACGGCACCAAGAACGAA 10546 29 96.6 32 ............................C AGGATTTGCCGGCCGCCGCCGGCACCGATCAC 10607 29 100.0 32 ............................. CCTTCCGGCGGCCTCCATCCGAAGAATTCATC 10668 29 100.0 32 ............................. CGCTTACCGTCATCGCTGACAAGATTGCGCGC 10729 29 100.0 32 ............................. CTATGGTAAGGGCAGCCAGGAAGGCGAATGCA 10790 29 100.0 32 ............................. GATGCATTCAACGACACCGTTGTCTGGCTACG 10851 29 100.0 32 ............................. CGCCGGAGCCGGAGCAGGTCGTGATTACCGCT 10912 29 100.0 34 ............................. GTGAACGCGTCCGTAAGGCGCGCAAATACGCCAA 10975 29 100.0 32 ............................. GCGATGATGGCGGCGATGATGCCGCCGCCGGC 11036 29 100.0 32 ............................. AGGAGCTGCCATGCGCTTTCTAATCGACGAGC 11097 29 100.0 32 ............................. GTCGGGGTGGGCGACTTCGTCAACTTCACCGT 11158 29 100.0 32 ............................. CATTACCTGCCAGAGGAGACGCTGGAATCGGA 11219 29 100.0 32 ............................. TTCGTCGTGGATTGCGAGCATCACGGGCTGAC 11280 29 100.0 32 ............................. ACCGGCTCGTTGCCGGCATCCTTCAGCTCCTC 11341 29 100.0 32 ............................. TCCACCGCGCTGGCATATCCCAGGCGCTGCCA 11402 29 100.0 32 ............................. CCCTTGACCTCATGAGCCTCCATCTCCCCACC 11463 29 100.0 32 ............................. CGGCTAGCGGATGAGCGCGACCGGCTGCGGAT 11524 29 100.0 32 ............................. TCGCTGCCGGGGCTGCGCATGTTCGCCCCCTT 11585 29 100.0 32 ............................. GTCACGATCCAAACCGCCAGCATCCGCAACCT 11646 29 100.0 32 ............................. CCAGCGCGCACCGGGGCCAGGACAAGCGGCAG 11707 29 100.0 32 ............................. GCCGGTTGACCGTTGGCCAGATCGACACCGAG 11768 29 100.0 32 ............................. TCACCTTCGCCGAGCGCCGCACCGAAACCGCC 11829 29 100.0 32 ............................. GTATGCCTCGACATCAGCTACATGGGCATGAT 11890 29 100.0 32 ............................. GTGGGCGCCCTGCGCGGTATACAGATAGAGAA 11951 29 100.0 32 ............................. TCCGCTCGAACCGGGCGTGTGGCTGATCCCAG 12012 29 100.0 32 ............................. CTATTGCAGTTGCTGCGGCGCTTTGCGCGGCC 12073 29 100.0 32 ............................. TTTTCGGCGTCTTCCTTCTTGTGGGCGATGAC 12134 29 100.0 32 ............................. GCCAAATCCTTCAGCGGCGCGCCGCTCTTCGC 12195 29 100.0 32 ............................. ATGAAAATCTGGATGAACGTGGTGAAGCCTAG 12256 29 100.0 32 ............................. GCCAGCAGCACCAGGGCGAATAGGGCGGCGAC 12317 29 100.0 32 ............................. ACTTTGAGGACGCCATCAGCGGTGATGTGAAA 12378 29 100.0 32 ............................. TCGATATGGTCGGCGGCCGGGCGCCAGCCAAG 12439 29 100.0 32 ............................. TTGCCCAAGCCCGACCTGGCAGTCATCGTTGA 12500 29 100.0 32 ............................. CCTGGAAACGTGCAGGGCAACCCGCAGCTGCC 12561 29 100.0 32 ............................. TAAGTCGCCGTCAACTTGCCGTTGTCGTCGCG 12622 29 82.8 0 ....................A...TG.TC | ========== ====== ====== ====== ============================= ================================== ================== 58 29 99.6 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTGGACGCCGGCGGCCTGGACAAGCCGGAGGCGCAGGGCGTGGTGGACGCGGCGTTTCCCGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGCTGCTGGAAATCCGCGCCGGCGTTTACGTGGGCAACTACAACCGCAAAATCCGCGATTACCTGTGGCAGCAGGTGGAAGAGGGGCTGGAAGACGGCAACGCGGTGATGGCTTGGCAGGCCGCCACCGAGGCCGGCTTCGACTTCGTCACGCTGGGCGCCAACCGCCGCATCCCGGCCGAGTTCGACGGCGCGAAATTGGTGTCTTTTTTGCCGCCGCCGGTGTCGGAAGCGGGGGGCGAATAGAGGGCGGGTGGGGTGTGGAGAAAGGTAGGTTTGGCTCTTTAAAAATCGGTAGATTTTTGAGTGGTAATTTTGTTTTGAAAAATCAGTTGCTTGCAATTGGT # Right flank : CCTGCCCGTCTATCGCTTGCTTAATCCGCGGCCGTCGCGTTGCCCGATGCGCTTGCGATCGACGCGCCGTGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTTAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGCTGGCGCTGGCCGGCCATTCTTGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTGGCCGGTGCGGCGGCGTTCGCGGGGATAGAGGTGGTCAGCGGAGCCGTTGGCTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //