Array 1 1963-2195 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUNL01000081.1 Mannheimia haemolytica D38 Cont82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1963 32 100.0 36 ................................ CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA 2031 32 100.0 34 ................................ TTCTTGAATACCTCCGGAGTCAGTTAAGATAAGG 2097 32 100.0 35 ................................ CTTTTTCAAGAATCAAGATTAAGAGATCCAAACAA 2164 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 100.0 35 CCAGCCACCTACGCGTGGCTGCGAATTGAAAC # Left flank : TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA # Right flank : TCCGACACTTGCCCGTCTGCACTCGCCCTAGTGCCCAGCCACCTACGCGTGGCTGCGAAT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCACCTACGCGTGGCTGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.01,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6-571 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUNL01000051.1 Mannheimia haemolytica D38 Cont55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 6 32 93.8 33 C....................C.......... TGCGATTTTTGGATTTTCGGGCGATAAATGATA 71 32 96.9 34 C............................... TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG 137 32 100.0 34 ................................ TTTACCGTTTACCGATTGGATTTTAATGCTAGAG 203 32 100.0 35 ................................ CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC 270 32 100.0 35 ................................ CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC 337 32 100.0 37 ................................ AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA 406 32 100.0 35 ................................ TTTATCTGTTGCGGTCAATTGTATATCTTGAATTT 473 32 100.0 35 ................................ CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG 540 32 93.8 0 ..........T............T........ | ========== ====== ====== ====== ================================ ===================================== ================== 9 32 98.3 35 GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Left flank : TTTACC # Right flank : CGGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.10,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //