Array 1 108007-106225 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCD01000003.1 Salmonella enterica strain BCW_2515 NODE_3_length_345566_cov_3.01106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108006 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107945 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107884 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107823 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107762 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107700 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107639 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107578 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107517 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107456 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107395 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107334 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107273 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107212 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107151 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107090 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107029 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106968 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106906 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106803 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106742 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106681 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106620 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106559 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106498 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106437 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106376 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106315 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106254 29 96.6 0 A............................ | A [106227] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125632-124139 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCD01000003.1 Salmonella enterica strain BCW_2515 NODE_3_length_345566_cov_3.01106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125631 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125570 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125509 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125448 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125387 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125326 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125265 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125204 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125143 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125082 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125021 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124960 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124899 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124838 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124777 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124716 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124654 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124593 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124532 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124471 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124410 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124349 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124288 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124227 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124166 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //