Array 1 49-2296 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIBY010000014.1 Wohlfahrtiimonas chitiniclastica strain DSM 105839 NODE_14_length_7414_cov_178.395802, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49 28 100.0 32 ............................ AAGTTATGTTTGCCAAATCCCGATGCATCTTA 109 28 100.0 32 ............................ AATTAGTGAAATGACTTTTAAATCTGCCATGT 169 28 100.0 32 ............................ CTATAAAGTCTTTGGTGTTACCTAAGGGAGAA 229 28 100.0 32 ............................ ATTGTTTAGCTCTTCGAGCATGGTTTTAATCC 289 28 100.0 32 ............................ ACCGGCAATTTTGTCGACGTCGAGGAGAGAAA 349 28 100.0 32 ............................ TACTTCTCTTATTCAGTTGCTAAGACTTGCTG 409 28 100.0 32 ............................ GCGGATATAAACTGTATTGCGATCAATACTAA 469 28 100.0 32 ............................ GCAATGGCGTCATGTGCTTTATTCATCACCTT 529 28 100.0 32 ............................ TAACTTCTTGAAGCTTTGCTGTTGATTTCTCA 589 28 100.0 32 ............................ AAGCACGGCAGCCAACCTGGTGAGCAAGAACC 649 28 100.0 32 ............................ ATCTTTTTCCTCAACTATTTTCCAATGTTCTA 709 28 100.0 32 ............................ TTTTGGATGATGCTGTAATTCAATAAACGATA 769 28 100.0 32 ............................ CAAATGAAACTATTGGAAAAACTGAACCTGAA 829 28 100.0 32 ............................ CAAAATTTCAAAACCTCTCAAAACACGCCAAA 889 28 100.0 32 ............................ GATTGCCTTACAGCGTTGTGCAACTCTAACGA 949 28 100.0 32 ............................ ATCCCTGCTTCATCTAAGACGATTACAGTATC 1009 28 100.0 32 ............................ ATTATCACAAGACTTACCAAACCATTCTTTAG 1069 28 100.0 32 ............................ ACAAACGTCAATTTATCTTGCTTGCTCTGCGC 1129 28 100.0 32 ............................ GCGTGAACCAAAGCCCTTTGTTTGCACTGTCT 1189 28 100.0 32 ............................ AAACAAAAGAGATGTCTTAATTAACCCAAGCA 1249 28 100.0 32 ............................ AGCGGGATCTAATGAATATATTATTTACAACA 1309 28 100.0 32 ............................ ATCATGTCGTTTCTAATCACTTTTAAACGCTC 1369 28 100.0 32 ............................ CGAATGCAAGAGAAGTACAGCTCAAAATGCGT 1429 28 96.4 32 ......A..................... AATATCGCTGCGTTGTGGTTATAATAGTATAA 1489 28 100.0 32 ............................ GTCACTTGGTAGGCGTACTAAGCTGATCCCCA 1549 28 100.0 32 ............................ ATGCTGATTCCGCCTGTGACCTGCAATTCACC 1609 28 100.0 32 ............................ ACTCTCGAAAGAATGGCGGCTTATCTGCTTAT 1669 28 100.0 32 ............................ AAGCCGAATGCTTAAGCATAGAGCAACGGCGC 1729 28 100.0 32 ............................ AATCATACCTAAATTCTCGCCAAAAATGTTAA 1789 28 100.0 32 ............................ ACATTGGCATGCGCCGTTTTCATCTAAAGAAA 1849 28 100.0 32 ............................ GATTAATCCGAACACCGGGAAGCCATACTTTA 1909 28 100.0 32 ............................ GCTACAGGCTCTACATTGACCGATTTATCATC 1969 28 100.0 32 ............................ ATAAATCAGACACCTTTGCGGCGCCTTTGAAT 2029 28 100.0 32 ............................ GTGCAATCTGGACAACGCTACCGCGGGTTGCT 2089 28 100.0 32 ............................ AAAAAAGGCTATTATTATTATGTCTGTGCTCA 2149 28 100.0 32 ............................ AAGCTGCCCCAGCGCATCGGCATTTCGGATTC 2209 28 100.0 32 ............................ ACTGTGGCCACAATACTTGAGGATTGATCCCA 2269 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ================================ ================== 38 28 99.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATAGGCAGCTTAGAAAACCCGTAAAGAGTTTTAAATATATAAATATCAG # Right flank : AAGTGGTTCCATGGTGAATTTGGAAAGTTTGCGGTTCACTGACTAAAAATTGAGAGTTTATAAATGACATTACTAAAAGTGTTGGCACGACCTTTGTTTGTGTTGAAAATTCATTCATCACATCCTTGCCAGTGTTTGCAGATGCCAATAGCAATACCGGTGGCAGCACACAATGGAATAATTCAGTGAACATTAAAATGTCCATCGATATGTATGACAATGGCGTGATGGACATTGGTATCAATGCAGAAATTGAAAATAAAAATGAAATCTCAGACAGATTTAAACATTATTGCGGCTATGTGCTTGGGCGTTTATTCAGTGGTCAGTTGTATAAACGCGGCTGGGTGAATAATGAGCATTTTGGTACAAGCAGCCATTAAGACTGTTGCATTTGTAGCCATTGATCAAGCGCATTGGCAAATTGTTGACGCTCTTTTTGTGATAATGGTGGTGGACCTGAAGTTTGTACACCGCTTGAGCGCAATTCATCCATAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38082-38671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIBY010000005.1 Wohlfahrtiimonas chitiniclastica strain DSM 105839 NODE_5_length_169687_cov_170.486593, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================= ================== 38082 27 75.0 173 .......ATG...A.C...-....T... GGTTGCGCCGTTGCAGGCGCGATTGAGCATGCGGACACTTAAGACCTTTATGGTTTGATCTTTAAAAATTTGGATAAATATCAGTAAATTACATGTCATTGGAAAAGGATTGGTTTTATGGCTATCAACTGCCGAAATCATGATGTTTCCAATGGCATTGTTATATTTTTAAA T [38086] 38283 28 100.0 32 ............................ TTTATCTTTGGCTAGATCATCAGCTTGTTCAT 38343 28 100.0 32 ............................ AATACGATTGATTGGGTAGATGAACAAAATCA 38403 28 100.0 32 ............................ TCCTTGGAATGTCTGGTAAAGAAACTGCCCGC 38463 28 100.0 33 ............................ CCGTTGAAGACATCCTGAAGCCGACTTATAACT 38524 28 100.0 32 ............................ TAATAACGTAGGTGGTGCTTTCGATATGTCGC 38584 28 100.0 32 ............................ TCAAATGCCACATCCCAGATGTTCTTGCCGTC 38644 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================================================================================================= ================== 8 28 96.9 52 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACAAAAAATTTCTGTGCGTATCGTCAATGAAGTTAAGCACGTGAACCGTATTGTGTATGACATCACAAGTAAGCCACCTGCAACGGTGGAGTGGGAATAATTTAGTTTCCACGCATTGACATGAACATAAAAAATGGCCTAAATAAATATTAGGCCATTTTTTTTAATGATTTTTAGGAGAGTTGAATGAAAAAATTATGGATGATTACAACCATTATGGCAGTTTTAACAGGTTGTGCTTCTGTTGAGCAAGATACCGTGGTGCATGATTTTACTGCATATGGCAAGCTCAATGAGCCTTGGCGCATCGTGGTCAAGCATGATGATCAGTTAGAGATTGAAGGGGTAATGGTTCGCGAGGGCACATTGAAAGTGACGCGATCGGCATATGCAAAAGGTGTTGAATTCTCAGGGGATTATGATGGGCAGTCATTGACATTAAACATCCGCTCATTGAAGTGTAAAGACAGCAATGGCGATGAAACAGATTTCACTGCCAC # Right flank : AGACCGGAGCTGTGCCATCGTAACGGGATTATGAACAGACAGTAAAATTAATGCTTTAAGTTACTCGCCATAATACGCCCAAAGCAGGACAGGTTTTTTCTTGGTTTGTAAAAGCTTGTCCACTTTGCGCATTGTGTCATCATCCACAACCGGGCAGCCTTGACTGAAACCTAAAGGCAAATAGTTTGGGAAAGTTTCTTCATTCGGAATCATCTTAAAAGAGTGGAGCACAATGTAACGCTTAAACGCATTGCTGTTACTCGCCTCTAGTCCATGGAGTTTGTAGTGAATGCCAATTCCCCATTTGCTCGGCGCGCGAATGCCCACACGGTATTTACCGAGAGAAGATGCATAGCTATTCGGTTGATTGCTAAAGACAATGTTTTGATTATCACTCTCAAAGCCCACATTGCCATAACCATGGGCGACGACGCTTTTGATCTGCGATGATTGTGTTTTAAAATTCCACACAAAAAAGCGATCTTTACCAGAATGGCGCG # Questionable array : NO Score: 4.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-2.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 167512-169640 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIBY010000005.1 Wohlfahrtiimonas chitiniclastica strain DSM 105839 NODE_5_length_169687_cov_170.486593, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 167512 28 100.0 32 ............................ ACTATAAGCATACGTTTATACCACCAATGGAT 167572 28 100.0 32 ............................ TCAAAACACTACATGAGCGCTCAGGCAGTACA 167632 28 100.0 32 ............................ TCTCAATCTATCCAAGCTATCTTTAGCTAACT 167692 28 100.0 32 ............................ AAGCTAGTATCTCAACACTTAGAAAAGGAACT 167752 28 100.0 32 ............................ AAGAATCAGTTGCGTTTACTGCGGGATATAAC 167812 28 100.0 32 ............................ TGAGTTACTTAAAGCATCAGAATCACAGGCTA 167872 28 100.0 32 ............................ TTTTGAAACAATAAAATACCACTTATTAAAAG 167932 28 100.0 32 ............................ ACGCAAGCGAAAGGCTTCTTGTCGTTGTCCGT 167992 28 100.0 32 ............................ ACTAACCAACTATCACTTTTGTGCAGTCAAAA 168052 28 100.0 32 ............................ GATAACGGGTTTTGATTGATATGGATTGCTGA 168112 28 100.0 32 ............................ ATTAGCGTTCTCTTTGACTTTCTCATATTCTT 168172 28 100.0 32 ............................ GCTGAGAGAATGAAAAGCAGAAGGGCTCATAT 168232 28 100.0 32 ............................ TTTAATCAGATTAGCGAGTCATCATTTTCAAC 168292 28 100.0 32 ............................ TGTAGAAAATGATGATTGTCCAATCTGTTCAA 168352 28 100.0 32 ............................ CGTAAAATATGGATTTACTTCTTATAAATCAT 168412 28 100.0 32 ............................ TTGCAAGCTCACAGTAGTTCACTCGATAGAGG 168472 28 100.0 32 ............................ GCAAACCTAGCTATTTAGTGGTCACTGTGGCG 168532 28 100.0 32 ............................ ATCCTCATTTTCATTGCATTATCCAAGTGAAT 168592 28 100.0 32 ............................ ATATCTATATAAATCAATACTATACATAACAA 168652 28 96.4 32 .............T.............. AATACAAAAATATTTTTGTATTGATTTGGTTT 168712 28 96.4 32 .............T.............. TTGCCAAATACAGTGGTAAAAGATAATAAGTT 168772 28 96.4 32 .............T.............. TACTAGAAAGTACTCAATTTAAAGAAGCTACG 168832 28 96.4 32 .............T.............. CCCATTAAATCTAACTCGATAACATCACGTCT 168892 28 96.4 32 .............T.............. TTGAATGGTTGCAGTGTCGCCTACCTTGTAGC 168952 28 96.4 32 .............T.............. TCATTAATTAGGCGAAAAAAGCCTACTGTAGT 169012 28 96.4 32 .............T.............. ATCAAGTATAATTATTTAATTTTTTTAAACAC 169072 28 96.4 33 .............T.............. ATCGCTACCTAAAGCTATAAATTCAGCTTCCGT 169133 28 96.4 32 .............T.............. ACTATAAGCATACGTTTATACCACCAATGGAT 169193 28 96.4 32 .............T.............. AACTGGTCAATGAGTGGTCTGATGCTACTCAT 169253 28 96.4 32 .............T.............. TTTAATCATTACTTTATCTGATTCGATTGTGA 169313 28 96.4 32 .............T.............. TCCTTTCTACCATGTGTAAGTGTGATGCGTTT 169373 28 96.4 32 .............T.............. TATTGGAGAATGATCCAAAATTATTCGAATAT 169433 28 96.4 32 .............T.............. ATTCCAAAATCTCTTGTTGAGAGATTGACTTC 169493 28 96.4 32 .............T.............. ACCCGTAAAGAGTTTTAAATATATAAATATCA 169553 28 96.4 32 .............T.............. ACTAGCCAACTATCACTTGTTCAAAACCTCTC 169613 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 36 28 98.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTGAATGCAGGTTCGTGGCTGTCACGCTTGACGGATTATGTGCACATTTCTTCCATTAAGCCGGTGCCTAATCGTGTGACGCATTATGCGATTTATCAGCGTAAACAGGTCAAAAGCAGTGTTGAGCGTTTAGCGCGCCGTTATGCTAAGCGTAAGCATGTGACATTTGAGGATGCCATGGCACATTTGAATGGCAAAACGCCAGAATATTGTGATTTGCCTTATGTTCAGATGAAAAGTGAAAGCACGGATCAACGTTTTCATTTATTGATCCATAAAGTAAAAGTGACAGCACCCACGGAGGCTGCAAACTTTACAACGTATGGTTTGAGTCATCATGAACAATTGTCTGCTGTCCCTGAATTTTAACCAATGTTTTTTGCTCTTTAAAAATTTGGATAAAAATCAGTAGCTTATAAAATAAGGAAAAATCATTGGTCTTTTCAGGTAAACTACCTGCGATCAGTGATTTTTCCTATCTTTTGTGCCGAAATTTTACT # Right flank : ACCCGTAAAGAGTTTTAAATATATAAATATCAGTTCACTGCCGCATA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //