Array 1 5373-6010 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKIY01000003.1 Salmonella enterica subsp. enterica serovar Derby strain 2012CEB922SAL scaffold_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5373 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 5434 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 5495 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 5556 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 5617 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 5678 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 5739 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 5800 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 5861 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 5922 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 5983 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22651-24267 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKIY01000003.1 Salmonella enterica subsp. enterica serovar Derby strain 2012CEB922SAL scaffold_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22651 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 22712 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 22774 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 22835 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 22896 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 22957 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 23018 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 23079 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 23140 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 23201 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 23262 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 23323 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 23384 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 23445 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 23506 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 23567 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 23628 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 23689 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 23750 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 23811 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 23872 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 23933 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 23994 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 24055 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 24116 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 24177 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 24238 29 93.1 0 A...........T................ | A [24264] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //