Array 1 208531-206489 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLUE01000005.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN044958 CFSAN044958_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 208530 29 100.0 32 ............................. GTGAAACACGGAATAACGCTTTCAGGCAGTGA 208469 29 100.0 32 ............................. ACACTATGTATCAATCGGGTCAACACAGTCAC 208408 29 100.0 32 ............................. GGTGGTAAGAATGACGGGTTCAATTCTGGTAG 208347 29 100.0 32 ............................. CGACCAGAACCCGCCTATAACGTCCCGGAACT 208286 29 100.0 32 ............................. TCAGCAAAAAATGCAATTCCAAGCATTAAGCC 208225 29 100.0 32 ............................. ACGGGGCTTTGATTGGCGGCGCACTTTCGGGG 208164 29 100.0 32 ............................. CCGTAGCGTTTTTCCAGATCATCGGTCAGAGT 208103 29 100.0 32 ............................. CGCCGGTACTCTGGTAACTGCGCCTGAAGTGC 208042 29 100.0 32 ............................. TCATTTTGCAACATCGGAAGAAACCGGACGTA 207981 29 100.0 32 ............................. GATGTATCAGGTAGCTCAGCGAACAAGTATAC 207920 29 100.0 32 ............................. AGGGTACACCGTTCCGTTACAGCTTCAGTGCG 207859 29 100.0 32 ............................. CTGCCTGCCGGAACGATCGTCAAGTACGGCGA 207798 29 100.0 32 ............................. TTATACGGACAGAACGACGCAATACCGGCTTT 207737 29 100.0 32 ............................. CGATGAAATATGCCGGTACGGGTATGGCCGGT 207676 29 100.0 32 ............................. GGTTCCGTATTCAGATTGAAGAGCTGGTTGAC 207615 29 100.0 32 ............................. GTGAAAAAGCAGCCTATCAGCGTGAAGTGCGG 207554 29 100.0 32 ............................. TGTAGTGAGTGATTGGGCGGGCGCGTATTCGA 207493 29 100.0 32 ............................. GTCCCGACGAATGGCAGCGTGAATTTCTGAGT 207432 29 100.0 32 ............................. CAATTCGGGAATCTGAGGGGCTAAGTCAGGCT 207371 29 100.0 32 ............................. GAACATCAGACCTTATCACCTGGTGGCAATCG 207310 29 100.0 32 ............................. CAGGAAAAAACCGGGGAAAACGGCAACCGCGT 207249 29 100.0 32 ............................. ATAAAAGGCTCGTTACTCTCGTGGGCATTCCG 207188 29 100.0 32 ............................. GAGAAAACCAACGCATGAACAGTTTAACGGTA 207127 29 100.0 32 ............................. TAATAGCCGTTAATCAGGGTACGCAGACGGAC 207066 29 100.0 32 ............................. ATGGTGGGATGCTGGACTGCGATGAAACCGCA 207005 29 100.0 32 ............................. CCAGTCTTGATACTGCTGTGTGTTCTTCCCGT 206944 29 100.0 32 ............................. GGTGGTACGGCCTTGATAGTCTTCACGACACC 206883 29 100.0 32 ............................. AGGAGACAAATTGACAGTCGTCTGGCGAAGAT 206822 29 100.0 32 ............................. ACGACAGTGACGCGTGATTGCTCGTAGTGGTC 206761 29 100.0 32 ............................. TGTGTAATTCGCTTTTTTGTAATTCAGAGGGG 206700 29 100.0 32 ............................. TGGGGCCGCGACTGGCAGCTTGTGCAGTTCGG 206639 29 100.0 32 ............................. TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 206578 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 206517 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //